Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00093

Experiment: mer MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00091 and OHPLBJKB_00092 are separated by 79 nucleotidesOHPLBJKB_00092 and OHPLBJKB_00093 are separated by 52 nucleotidesOHPLBJKB_00093 and OHPLBJKB_00094 are separated by 153 nucleotides OHPLBJKB_00091: OHPLBJKB_00091 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 94,463 to 95,482 _00091 OHPLBJKB_00092: OHPLBJKB_00092 - Serine acetyltransferase, at 95,562 to 96,383 _00092 OHPLBJKB_00093: OHPLBJKB_00093 - 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11, at 96,436 to 96,909 _00093 OHPLBJKB_00094: OHPLBJKB_00094 - L-lactate dehydrogenase, at 97,063 to 98,253 _00094 Position (kb) 96 97Strain fitness (log2 ratio) -2 -1 0 1 2at 95.539 kb on + strandat 95.540 kb on - strandat 95.540 kb on - strandat 95.597 kb on + strandat 95.701 kb on - strand, within OHPLBJKB_00092at 95.701 kb on - strand, within OHPLBJKB_00092at 95.850 kb on - strand, within OHPLBJKB_00092at 95.872 kb on - strand, within OHPLBJKB_00092at 96.023 kb on + strand, within OHPLBJKB_00092at 96.288 kb on - strand, within OHPLBJKB_00092at 96.347 kb on + strandat 96.348 kb on - strandat 96.356 kb on + strandat 96.357 kb on - strandat 96.357 kb on - strandat 96.357 kb on - strandat 96.357 kb on - strandat 96.357 kb on - strandat 96.357 kb on - strandat 96.357 kb on - strandat 96.381 kb on + strandat 96.381 kb on + strandat 96.381 kb on + strandat 96.381 kb on + strandat 96.381 kb on + strandat 96.381 kb on + strandat 96.381 kb on + strandat 96.381 kb on + strandat 96.381 kb on + strandat 96.381 kb on + strandat 96.382 kb on - strandat 96.382 kb on - strandat 96.382 kb on - strandat 96.382 kb on - strandat 96.382 kb on - strandat 96.382 kb on - strandat 96.382 kb on - strandat 96.382 kb on - strandat 96.382 kb on - strandat 96.382 kb on - strandat 96.382 kb on - strandat 96.382 kb on - strandat 96.382 kb on - strandat 96.411 kb on + strandat 96.411 kb on + strandat 96.411 kb on + strandat 96.412 kb on - strandat 96.412 kb on - strandat 96.412 kb on - strandat 96.412 kb on - strandat 96.412 kb on - strandat 96.412 kb on - strandat 96.428 kb on + strandat 96.429 kb on - strandat 96.429 kb on - strandat 96.433 kb on + strandat 96.433 kb on + strandat 96.437 kb on + strandat 96.437 kb on + strandat 96.437 kb on + strandat 96.438 kb on - strandat 96.438 kb on - strandat 96.485 kb on + strand, within OHPLBJKB_00093at 96.485 kb on + strand, within OHPLBJKB_00093at 96.486 kb on - strand, within OHPLBJKB_00093at 96.486 kb on - strand, within OHPLBJKB_00093at 96.486 kb on - strand, within OHPLBJKB_00093at 96.486 kb on - strand, within OHPLBJKB_00093at 96.486 kb on - strand, within OHPLBJKB_00093at 96.644 kb on - strand, within OHPLBJKB_00093at 96.663 kb on + strand, within OHPLBJKB_00093at 96.663 kb on + strand, within OHPLBJKB_00093at 96.664 kb on - strand, within OHPLBJKB_00093at 96.664 kb on - strand, within OHPLBJKB_00093at 96.819 kb on + strand, within OHPLBJKB_00093at 96.819 kb on + strand, within OHPLBJKB_00093at 96.820 kb on - strand, within OHPLBJKB_00093at 96.840 kb on + strand, within OHPLBJKB_00093at 96.867 kb on + strandat 96.891 kb on - strandat 96.891 kb on - strandat 96.895 kb on + strandat 96.910 kb on - strandat 96.910 kb on - strandat 96.920 kb on + strandat 97.064 kb on + strandat 97.065 kb on - strandat 97.210 kb on + strand, within OHPLBJKB_00094at 97.211 kb on - strand, within OHPLBJKB_00094at 97.219 kb on - strand, within OHPLBJKB_00094at 97.222 kb on + strand, within OHPLBJKB_00094at 97.222 kb on + strand, within OHPLBJKB_00094at 97.222 kb on + strand, within OHPLBJKB_00094at 97.223 kb on - strand, within OHPLBJKB_00094at 97.223 kb on - strand, within OHPLBJKB_00094at 97.253 kb on + strand, within OHPLBJKB_00094at 97.253 kb on + strand, within OHPLBJKB_00094at 97.253 kb on + strand, within OHPLBJKB_00094at 97.254 kb on - strand, within OHPLBJKB_00094at 97.254 kb on - strand, within OHPLBJKB_00094at 97.254 kb on - strand, within OHPLBJKB_00094at 97.277 kb on - strand, within OHPLBJKB_00094at 97.277 kb on - strand, within OHPLBJKB_00094at 97.302 kb on + strand, within OHPLBJKB_00094at 97.351 kb on + strand, within OHPLBJKB_00094at 97.351 kb on + strand, within OHPLBJKB_00094at 97.352 kb on - strand, within OHPLBJKB_00094at 97.352 kb on - strand, within OHPLBJKB_00094at 97.352 kb on - strand, within OHPLBJKB_00094at 97.353 kb on + strand, within OHPLBJKB_00094at 97.354 kb on - strand, within OHPLBJKB_00094at 97.405 kb on + strand, within OHPLBJKB_00094at 97.405 kb on + strand, within OHPLBJKB_00094at 97.405 kb on + strand, within OHPLBJKB_00094at 97.406 kb on - strand, within OHPLBJKB_00094at 97.406 kb on - strand, within OHPLBJKB_00094at 97.406 kb on - strand, within OHPLBJKB_00094at 97.465 kb on + strand, within OHPLBJKB_00094at 97.465 kb on + strand, within OHPLBJKB_00094at 97.575 kb on + strand, within OHPLBJKB_00094at 97.595 kb on + strand, within OHPLBJKB_00094at 97.595 kb on + strand, within OHPLBJKB_00094at 97.596 kb on - strand, within OHPLBJKB_00094at 97.596 kb on - strand, within OHPLBJKB_00094at 97.625 kb on + strand, within OHPLBJKB_00094at 97.625 kb on + strand, within OHPLBJKB_00094at 97.626 kb on - strand, within OHPLBJKB_00094at 97.635 kb on + strand, within OHPLBJKB_00094at 97.635 kb on + strand, within OHPLBJKB_00094at 97.638 kb on + strand, within OHPLBJKB_00094at 97.638 kb on + strand, within OHPLBJKB_00094at 97.639 kb on - strand, within OHPLBJKB_00094at 97.639 kb on - strand, within OHPLBJKB_00094at 97.639 kb on - strand, within OHPLBJKB_00094at 97.642 kb on + strand, within OHPLBJKB_00094at 97.642 kb on + strand, within OHPLBJKB_00094at 97.643 kb on - strand, within OHPLBJKB_00094at 97.845 kb on + strand, within OHPLBJKB_00094at 97.864 kb on + strand, within OHPLBJKB_00094at 97.864 kb on + strand, within OHPLBJKB_00094at 97.864 kb on + strand, within OHPLBJKB_00094at 97.864 kb on + strand, within OHPLBJKB_00094at 97.865 kb on - strand, within OHPLBJKB_00094at 97.865 kb on - strand, within OHPLBJKB_00094at 97.865 kb on - strand, within OHPLBJKB_00094at 97.865 kb on - strand, within OHPLBJKB_00094at 97.868 kb on + strand, within OHPLBJKB_00094at 97.868 kb on + strand, within OHPLBJKB_00094at 97.868 kb on + strand, within OHPLBJKB_00094at 97.868 kb on + strand, within OHPLBJKB_00094at 97.868 kb on + strand, within OHPLBJKB_00094at 97.869 kb on - strand, within OHPLBJKB_00094

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Per-strain Table

Position Strand Gene LocusTag Fraction mer MOI1
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95,539 + -0.1
95,540 - +1.6
95,540 - +1.2
95,597 + +0.3
95,701 - OHPLBJKB_00092 0.17 -1.0
95,701 - OHPLBJKB_00092 0.17 -0.4
95,850 - OHPLBJKB_00092 0.35 +2.3
95,872 - OHPLBJKB_00092 0.38 +0.1
96,023 + OHPLBJKB_00092 0.56 +0.9
96,288 - OHPLBJKB_00092 0.88 -0.1
96,347 + +0.4
96,348 - +0.1
96,356 + -0.1
96,357 - +1.9
96,357 - +0.1
96,357 - -0.1
96,357 - +0.4
96,357 - +1.2
96,357 - +0.3
96,357 - -0.0
96,381 + +0.4
96,381 + +0.3
96,381 + +1.0
96,381 + +0.8
96,381 + +0.4
96,381 + -0.1
96,381 + -0.1
96,381 + +0.9
96,381 + +0.2
96,381 + +0.5
96,382 - -0.2
96,382 - +0.8
96,382 - -0.2
96,382 - -0.6
96,382 - +1.0
96,382 - -0.2
96,382 - +0.3
96,382 - -0.5
96,382 - +0.5
96,382 - -0.0
96,382 - +0.1
96,382 - -1.0
96,382 - +0.3
96,411 + +0.2
96,411 + -0.1
96,411 + -0.2
96,412 - +0.3
96,412 - -1.0
96,412 - +0.4
96,412 - -1.1
96,412 - -0.1
96,412 - -1.1
96,428 + +0.3
96,429 - -0.4
96,429 - +0.7
96,433 + +0.5
96,433 + -1.0
96,437 + -0.5
96,437 + +0.1
96,437 + -0.4
96,438 - +0.1
96,438 - -0.2
96,485 + OHPLBJKB_00093 0.10 -0.1
96,485 + OHPLBJKB_00093 0.10 -0.8
96,486 - OHPLBJKB_00093 0.11 -0.6
96,486 - OHPLBJKB_00093 0.11 -0.3
96,486 - OHPLBJKB_00093 0.11 -1.1
96,486 - OHPLBJKB_00093 0.11 -0.2
96,486 - OHPLBJKB_00093 0.11 -0.4
96,644 - OHPLBJKB_00093 0.44 +0.3
96,663 + OHPLBJKB_00093 0.48 -0.8
96,663 + OHPLBJKB_00093 0.48 +0.3
96,664 - OHPLBJKB_00093 0.48 -0.0
96,664 - OHPLBJKB_00093 0.48 +0.1
96,819 + OHPLBJKB_00093 0.81 +0.8
96,819 + OHPLBJKB_00093 0.81 -0.2
96,820 - OHPLBJKB_00093 0.81 -0.9
96,840 + OHPLBJKB_00093 0.85 -0.4
96,867 + +0.1
96,891 - +1.4
96,891 - -1.4
96,895 + +0.5
96,910 - +0.2
96,910 - -0.1
96,920 + +0.4
97,064 + -0.5
97,065 - +0.6
97,210 + OHPLBJKB_00094 0.12 -0.2
97,211 - OHPLBJKB_00094 0.12 +0.3
97,219 - OHPLBJKB_00094 0.13 -1.2
97,222 + OHPLBJKB_00094 0.13 +0.2
97,222 + OHPLBJKB_00094 0.13 -0.5
97,222 + OHPLBJKB_00094 0.13 +0.2
97,223 - OHPLBJKB_00094 0.13 +0.2
97,223 - OHPLBJKB_00094 0.13 +0.2
97,253 + OHPLBJKB_00094 0.16 +0.1
97,253 + OHPLBJKB_00094 0.16 -0.7
97,253 + OHPLBJKB_00094 0.16 -0.6
97,254 - OHPLBJKB_00094 0.16 -1.0
97,254 - OHPLBJKB_00094 0.16 -0.9
97,254 - OHPLBJKB_00094 0.16 +1.8
97,277 - OHPLBJKB_00094 0.18 -0.6
97,277 - OHPLBJKB_00094 0.18 -0.4
97,302 + OHPLBJKB_00094 0.20 -1.1
97,351 + OHPLBJKB_00094 0.24 -0.0
97,351 + OHPLBJKB_00094 0.24 -1.1
97,352 - OHPLBJKB_00094 0.24 +0.9
97,352 - OHPLBJKB_00094 0.24 -0.0
97,352 - OHPLBJKB_00094 0.24 -0.1
97,353 + OHPLBJKB_00094 0.24 +0.2
97,354 - OHPLBJKB_00094 0.24 -0.1
97,405 + OHPLBJKB_00094 0.29 +0.5
97,405 + OHPLBJKB_00094 0.29 -0.5
97,405 + OHPLBJKB_00094 0.29 -0.5
97,406 - OHPLBJKB_00094 0.29 -1.0
97,406 - OHPLBJKB_00094 0.29 +0.1
97,406 - OHPLBJKB_00094 0.29 +0.1
97,465 + OHPLBJKB_00094 0.34 -0.1
97,465 + OHPLBJKB_00094 0.34 -0.1
97,575 + OHPLBJKB_00094 0.43 -0.0
97,595 + OHPLBJKB_00094 0.45 +1.6
97,595 + OHPLBJKB_00094 0.45 +0.4
97,596 - OHPLBJKB_00094 0.45 -0.2
97,596 - OHPLBJKB_00094 0.45 +0.4
97,625 + OHPLBJKB_00094 0.47 -0.7
97,625 + OHPLBJKB_00094 0.47 -1.8
97,626 - OHPLBJKB_00094 0.47 +0.4
97,635 + OHPLBJKB_00094 0.48 -0.4
97,635 + OHPLBJKB_00094 0.48 -1.3
97,638 + OHPLBJKB_00094 0.48 +0.1
97,638 + OHPLBJKB_00094 0.48 +0.5
97,639 - OHPLBJKB_00094 0.48 +0.3
97,639 - OHPLBJKB_00094 0.48 +0.1
97,639 - OHPLBJKB_00094 0.48 +0.4
97,642 + OHPLBJKB_00094 0.49 -0.0
97,642 + OHPLBJKB_00094 0.49 +0.2
97,643 - OHPLBJKB_00094 0.49 +0.6
97,845 + OHPLBJKB_00094 0.66 -0.4
97,864 + OHPLBJKB_00094 0.67 -0.3
97,864 + OHPLBJKB_00094 0.67 -0.8
97,864 + OHPLBJKB_00094 0.67 -0.1
97,864 + OHPLBJKB_00094 0.67 -0.0
97,865 - OHPLBJKB_00094 0.67 +0.0
97,865 - OHPLBJKB_00094 0.67 +0.0
97,865 - OHPLBJKB_00094 0.67 +0.4
97,865 - OHPLBJKB_00094 0.67 +2.0
97,868 + OHPLBJKB_00094 0.68 +0.2
97,868 + OHPLBJKB_00094 0.68 -1.6
97,868 + OHPLBJKB_00094 0.68 -1.1
97,868 + OHPLBJKB_00094 0.68 +0.4
97,868 + OHPLBJKB_00094 0.68 -1.2
97,869 - OHPLBJKB_00094 0.68 +0.3

Or see this region's nucleotide sequence