Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02185

Experiment: Ammonium chloride (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02184 and MPMX26_02185 are separated by 20 nucleotidesMPMX26_02185 and MPMX26_02186 are separated by 20 nucleotides MPMX26_02184: MPMX26_02184 - Deoxyguanosinetriphosphate triphosphohydrolase-like protein, at 2,240,203 to 2,241,534 _02184 MPMX26_02185: MPMX26_02185 - Holliday junction ATP-dependent DNA helicase RuvA, at 2,241,555 to 2,242,157 _02185 MPMX26_02186: MPMX26_02186 - Holliday junction ATP-dependent DNA helicase RuvB, at 2,242,178 to 2,243,182 _02186 Position (kb) 2241 2242 2243Strain fitness (log2 ratio) -2 -1 0 1 2at 2240.599 kb on + strand, within MPMX26_02184at 2240.605 kb on + strand, within MPMX26_02184at 2240.617 kb on + strand, within MPMX26_02184at 2240.660 kb on + strand, within MPMX26_02184at 2240.862 kb on + strand, within MPMX26_02184at 2240.862 kb on + strand, within MPMX26_02184at 2241.223 kb on + strand, within MPMX26_02184at 2241.223 kb on + strand, within MPMX26_02184at 2241.223 kb on + strand, within MPMX26_02184at 2241.301 kb on + strand, within MPMX26_02184at 2241.477 kb on + strandat 2241.495 kb on + strandat 2241.496 kb on + strandat 2241.496 kb on + strandat 2241.502 kb on + strandat 2241.502 kb on + strandat 2241.502 kb on + strandat 2241.502 kb on + strandat 2241.502 kb on + strandat 2241.502 kb on + strandat 2241.502 kb on + strandat 2241.633 kb on + strand, within MPMX26_02185at 2241.704 kb on + strand, within MPMX26_02185at 2241.719 kb on + strand, within MPMX26_02185at 2241.740 kb on + strand, within MPMX26_02185at 2241.740 kb on + strand, within MPMX26_02185at 2241.846 kb on + strand, within MPMX26_02185at 2241.867 kb on + strand, within MPMX26_02185at 2241.867 kb on + strand, within MPMX26_02185at 2241.867 kb on + strand, within MPMX26_02185at 2241.869 kb on + strand, within MPMX26_02185at 2241.900 kb on + strand, within MPMX26_02185at 2241.944 kb on + strand, within MPMX26_02185at 2241.974 kb on + strand, within MPMX26_02185at 2241.984 kb on + strand, within MPMX26_02185at 2242.013 kb on + strand, within MPMX26_02185at 2242.038 kb on + strand, within MPMX26_02185at 2242.038 kb on + strand, within MPMX26_02185at 2242.038 kb on + strand, within MPMX26_02185at 2242.270 kb on + strandat 2242.328 kb on + strand, within MPMX26_02186at 2242.328 kb on + strand, within MPMX26_02186at 2242.340 kb on + strand, within MPMX26_02186at 2242.340 kb on + strand, within MPMX26_02186at 2242.366 kb on + strand, within MPMX26_02186at 2242.366 kb on + strand, within MPMX26_02186at 2242.366 kb on + strand, within MPMX26_02186at 2242.366 kb on + strand, within MPMX26_02186at 2242.430 kb on + strand, within MPMX26_02186at 2242.451 kb on + strand, within MPMX26_02186at 2242.451 kb on + strand, within MPMX26_02186at 2242.466 kb on + strand, within MPMX26_02186at 2242.466 kb on + strand, within MPMX26_02186at 2242.490 kb on + strand, within MPMX26_02186at 2242.592 kb on + strand, within MPMX26_02186at 2242.861 kb on + strand, within MPMX26_02186at 2243.013 kb on + strand, within MPMX26_02186at 2243.015 kb on + strand, within MPMX26_02186at 2243.063 kb on + strand, within MPMX26_02186at 2243.087 kb on + strandat 2243.087 kb on + strandat 2243.092 kb on + strandat 2243.092 kb on + strandat 2243.092 kb on + strandat 2243.092 kb on + strandat 2243.092 kb on + strandat 2243.093 kb on + strandat 2243.131 kb on + strandat 2243.131 kb on + strandat 2243.149 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
remove
2,240,599 + MPMX26_02184 0.30 +0.5
2,240,605 + MPMX26_02184 0.30 +0.3
2,240,617 + MPMX26_02184 0.31 -0.6
2,240,660 + MPMX26_02184 0.34 -1.0
2,240,862 + MPMX26_02184 0.49 +0.2
2,240,862 + MPMX26_02184 0.49 -1.8
2,241,223 + MPMX26_02184 0.77 +0.0
2,241,223 + MPMX26_02184 0.77 -0.0
2,241,223 + MPMX26_02184 0.77 -0.4
2,241,301 + MPMX26_02184 0.82 -2.6
2,241,477 + +0.3
2,241,495 + -0.3
2,241,496 + -0.1
2,241,496 + +0.5
2,241,502 + -0.5
2,241,502 + -0.0
2,241,502 + -0.1
2,241,502 + -0.2
2,241,502 + -0.2
2,241,502 + +2.2
2,241,502 + -0.3
2,241,633 + MPMX26_02185 0.13 -0.1
2,241,704 + MPMX26_02185 0.25 -0.9
2,241,719 + MPMX26_02185 0.27 -0.1
2,241,740 + MPMX26_02185 0.31 +1.4
2,241,740 + MPMX26_02185 0.31 -0.9
2,241,846 + MPMX26_02185 0.48 -0.2
2,241,867 + MPMX26_02185 0.52 -1.6
2,241,867 + MPMX26_02185 0.52 -1.1
2,241,867 + MPMX26_02185 0.52 -1.8
2,241,869 + MPMX26_02185 0.52 -2.2
2,241,900 + MPMX26_02185 0.57 -0.7
2,241,944 + MPMX26_02185 0.65 -1.0
2,241,974 + MPMX26_02185 0.69 +0.0
2,241,984 + MPMX26_02185 0.71 -1.7
2,242,013 + MPMX26_02185 0.76 -0.7
2,242,038 + MPMX26_02185 0.80 -0.7
2,242,038 + MPMX26_02185 0.80 +0.9
2,242,038 + MPMX26_02185 0.80 -0.2
2,242,270 + -0.2
2,242,328 + MPMX26_02186 0.15 -1.5
2,242,328 + MPMX26_02186 0.15 -0.0
2,242,340 + MPMX26_02186 0.16 -0.6
2,242,340 + MPMX26_02186 0.16 +0.0
2,242,366 + MPMX26_02186 0.19 +1.3
2,242,366 + MPMX26_02186 0.19 +1.8
2,242,366 + MPMX26_02186 0.19 -1.2
2,242,366 + MPMX26_02186 0.19 -1.7
2,242,430 + MPMX26_02186 0.25 -0.0
2,242,451 + MPMX26_02186 0.27 -1.9
2,242,451 + MPMX26_02186 0.27 -0.6
2,242,466 + MPMX26_02186 0.29 +0.4
2,242,466 + MPMX26_02186 0.29 -0.4
2,242,490 + MPMX26_02186 0.31 -1.2
2,242,592 + MPMX26_02186 0.41 -0.9
2,242,861 + MPMX26_02186 0.68 +0.4
2,243,013 + MPMX26_02186 0.83 +0.4
2,243,015 + MPMX26_02186 0.83 -0.7
2,243,063 + MPMX26_02186 0.88 -0.4
2,243,087 + -0.9
2,243,087 + +0.0
2,243,092 + -0.4
2,243,092 + -1.9
2,243,092 + -1.0
2,243,092 + -1.6
2,243,092 + +0.2
2,243,093 + -1.0
2,243,131 + -0.7
2,243,131 + +0.2
2,243,149 + -1.9

Or see this region's nucleotide sequence