Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02055

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02053 and MPMX26_02054 overlap by 11 nucleotidesMPMX26_02054 and MPMX26_02055 overlap by 1 nucleotidesMPMX26_02055 and MPMX26_02056 are separated by 85 nucleotidesMPMX26_02056 and MPMX26_02057 are separated by 151 nucleotides MPMX26_02053: MPMX26_02053 - hypothetical protein, at 2,119,177 to 2,120,952 _02053 MPMX26_02054: MPMX26_02054 - hypothetical protein, at 2,120,942 to 2,121,388 _02054 MPMX26_02055: MPMX26_02055 - hypothetical protein, at 2,121,388 to 2,125,899 _02055 MPMX26_02056: MPMX26_02056 - hypothetical protein, at 2,125,985 to 2,126,446 _02056 MPMX26_02057: MPMX26_02057 - IS3 family transposase ISAba21, at 2,126,598 to 2,127,452 _02057 Position (kb) 2121 2122 2123 2124 2125 2126Strain fitness (log2 ratio) -1 0 1at 2123.460 kb on + strand, within MPMX26_02055at 2124.237 kb on - strand, within MPMX26_02055at 2124.841 kb on + strand, within MPMX26_02055at 2126.088 kb on - strand, within MPMX26_02056at 2126.140 kb on - strand, within MPMX26_02056at 2126.347 kb on - strand, within MPMX26_02056at 2126.431 kb on - strandat 2126.441 kb on - strandat 2126.441 kb on - strandat 2126.441 kb on - strandat 2126.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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2,123,460 + MPMX26_02055 0.46 -0.8
2,124,237 - MPMX26_02055 0.63 -1.1
2,124,841 + MPMX26_02055 0.77 -0.6
2,126,088 - MPMX26_02056 0.22 +0.7
2,126,140 - MPMX26_02056 0.34 -0.0
2,126,347 - MPMX26_02056 0.78 +0.0
2,126,431 - -1.4
2,126,441 - -0.2
2,126,441 - +0.4
2,126,441 - +0.2
2,126,441 - -0.6

Or see this region's nucleotide sequence