Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02053 and MPMX26_02054 overlap by 11 nucleotides MPMX26_02054 and MPMX26_02055 overlap by 1 nucleotides MPMX26_02055 and MPMX26_02056 are separated by 85 nucleotides MPMX26_02056 and MPMX26_02057 are separated by 151 nucleotides
MPMX26_02053: MPMX26_02053 - hypothetical protein, at 2,119,177 to 2,120,952
_02053
MPMX26_02054: MPMX26_02054 - hypothetical protein, at 2,120,942 to 2,121,388
_02054
MPMX26_02055: MPMX26_02055 - hypothetical protein, at 2,121,388 to 2,125,899
_02055
MPMX26_02056: MPMX26_02056 - hypothetical protein, at 2,125,985 to 2,126,446
_02056
MPMX26_02057: MPMX26_02057 - IS3 family transposase ISAba21, at 2,126,598 to 2,127,452
_02057
Position (kb)
2121
2122
2123
2124
2125
2126 Strain fitness (log2 ratio)
-1
0
1 at 2123.460 kb on + strand, within MPMX26_02055 at 2124.237 kb on - strand, within MPMX26_02055 at 2124.841 kb on + strand, within MPMX26_02055 at 2126.088 kb on - strand, within MPMX26_02056 at 2126.140 kb on - strand, within MPMX26_02056 at 2126.347 kb on - strand, within MPMX26_02056 at 2126.431 kb on - strand at 2126.441 kb on - strand at 2126.441 kb on - strand at 2126.441 kb on - strand at 2126.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 2,123,460 + MPMX26_02055 0.46 -0.8 2,124,237 - MPMX26_02055 0.63 -1.1 2,124,841 + MPMX26_02055 0.77 -0.6 2,126,088 - MPMX26_02056 0.22 +0.7 2,126,140 - MPMX26_02056 0.34 -0.0 2,126,347 - MPMX26_02056 0.78 +0.0 2,126,431 - -1.4 2,126,441 - -0.2 2,126,441 - +0.4 2,126,441 - +0.2 2,126,441 - -0.6
Or see this region's nucleotide sequence