Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01898

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01897 and MPMX26_01898 are separated by 164 nucleotidesMPMX26_01898 and MPMX26_01899 are separated by 2 nucleotidesMPMX26_01899 and MPMX26_01900 are separated by 10 nucleotides MPMX26_01897: MPMX26_01897 - hypothetical protein, at 1,938,758 to 1,939,570 _01897 MPMX26_01898: MPMX26_01898 - Anthranilate 1,2-dioxygenase large subunit, at 1,939,735 to 1,941,150 _01898 MPMX26_01899: MPMX26_01899 - Anthranilate 1,2-dioxygenase small subunit, at 1,941,153 to 1,941,644 _01899 MPMX26_01900: MPMX26_01900 - Anthranilate 1,2-dioxygenase electron transfer component, at 1,941,655 to 1,942,689 _01900 Position (kb) 1939 1940 1941 1942Strain fitness (log2 ratio) -2 -1 0 1at 1938.772 kb on + strandat 1938.772 kb on + strandat 1938.782 kb on + strandat 1938.782 kb on + strandat 1938.783 kb on + strandat 1938.790 kb on + strandat 1938.830 kb on + strandat 1938.830 kb on + strandat 1938.835 kb on + strandat 1938.836 kb on + strandat 1938.861 kb on + strand, within MPMX26_01897at 1938.861 kb on + strand, within MPMX26_01897at 1938.914 kb on + strand, within MPMX26_01897at 1938.916 kb on + strand, within MPMX26_01897at 1938.933 kb on + strand, within MPMX26_01897at 1938.943 kb on + strand, within MPMX26_01897at 1938.951 kb on + strand, within MPMX26_01897at 1938.951 kb on + strand, within MPMX26_01897at 1938.993 kb on + strand, within MPMX26_01897at 1939.039 kb on + strand, within MPMX26_01897at 1939.092 kb on + strand, within MPMX26_01897at 1939.157 kb on + strand, within MPMX26_01897at 1939.157 kb on + strand, within MPMX26_01897at 1939.157 kb on + strand, within MPMX26_01897at 1939.157 kb on + strand, within MPMX26_01897at 1939.162 kb on + strand, within MPMX26_01897at 1939.185 kb on + strand, within MPMX26_01897at 1939.185 kb on + strand, within MPMX26_01897at 1939.185 kb on + strand, within MPMX26_01897at 1939.211 kb on + strand, within MPMX26_01897at 1939.215 kb on + strand, within MPMX26_01897at 1939.263 kb on + strand, within MPMX26_01897at 1939.265 kb on + strand, within MPMX26_01897at 1939.286 kb on + strand, within MPMX26_01897at 1939.319 kb on + strand, within MPMX26_01897at 1939.416 kb on + strand, within MPMX26_01897at 1939.437 kb on + strand, within MPMX26_01897at 1939.471 kb on + strand, within MPMX26_01897at 1939.471 kb on + strand, within MPMX26_01897at 1939.478 kb on + strand, within MPMX26_01897at 1939.480 kb on + strand, within MPMX26_01897at 1939.481 kb on + strand, within MPMX26_01897at 1939.528 kb on + strandat 1940.024 kb on + strand, within MPMX26_01898at 1940.024 kb on + strand, within MPMX26_01898at 1940.232 kb on - strand, within MPMX26_01898at 1941.288 kb on - strand, within MPMX26_01899at 1941.410 kb on + strand, within MPMX26_01899

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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1,938,772 + +0.0
1,938,772 + -0.9
1,938,782 + -0.4
1,938,782 + -0.6
1,938,783 + +0.8
1,938,790 + -0.3
1,938,830 + -0.3
1,938,830 + -0.5
1,938,835 + -0.4
1,938,836 + -0.4
1,938,861 + MPMX26_01897 0.13 +0.1
1,938,861 + MPMX26_01897 0.13 -0.6
1,938,914 + MPMX26_01897 0.19 -0.8
1,938,916 + MPMX26_01897 0.19 -0.7
1,938,933 + MPMX26_01897 0.22 -0.3
1,938,943 + MPMX26_01897 0.23 -0.7
1,938,951 + MPMX26_01897 0.24 -0.3
1,938,951 + MPMX26_01897 0.24 -0.8
1,938,993 + MPMX26_01897 0.29 -0.6
1,939,039 + MPMX26_01897 0.35 -0.3
1,939,092 + MPMX26_01897 0.41 -0.3
1,939,157 + MPMX26_01897 0.49 -0.8
1,939,157 + MPMX26_01897 0.49 -0.4
1,939,157 + MPMX26_01897 0.49 -0.3
1,939,157 + MPMX26_01897 0.49 +0.1
1,939,162 + MPMX26_01897 0.50 -1.2
1,939,185 + MPMX26_01897 0.53 -0.2
1,939,185 + MPMX26_01897 0.53 -2.2
1,939,185 + MPMX26_01897 0.53 -0.6
1,939,211 + MPMX26_01897 0.56 -0.5
1,939,215 + MPMX26_01897 0.56 -1.1
1,939,263 + MPMX26_01897 0.62 -0.5
1,939,265 + MPMX26_01897 0.62 +0.1
1,939,286 + MPMX26_01897 0.65 -0.4
1,939,319 + MPMX26_01897 0.69 -1.0
1,939,416 + MPMX26_01897 0.81 -0.5
1,939,437 + MPMX26_01897 0.84 -0.7
1,939,471 + MPMX26_01897 0.88 -0.7
1,939,471 + MPMX26_01897 0.88 -0.8
1,939,478 + MPMX26_01897 0.89 -0.9
1,939,480 + MPMX26_01897 0.89 -0.3
1,939,481 + MPMX26_01897 0.89 -1.2
1,939,528 + -0.1
1,940,024 + MPMX26_01898 0.20 -0.7
1,940,024 + MPMX26_01898 0.20 -1.1
1,940,232 - MPMX26_01898 0.35 -0.7
1,941,288 - MPMX26_01899 0.27 -0.5
1,941,410 + MPMX26_01899 0.52 -0.5

Or see this region's nucleotide sequence