Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01895

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01894 and MPMX26_01895 are separated by 16 nucleotidesMPMX26_01895 and MPMX26_01896 are separated by 27 nucleotidesMPMX26_01896 and MPMX26_01897 are separated by 253 nucleotides MPMX26_01894: MPMX26_01894 - hypothetical protein, at 1,936,788 to 1,937,855 _01894 MPMX26_01895: MPMX26_01895 - hypothetical protein, at 1,937,872 to 1,938,171 _01895 MPMX26_01896: MPMX26_01896 - Naphthalene 1,2-dioxygenase system, ferredoxin component, at 1,938,199 to 1,938,504 _01896 MPMX26_01897: MPMX26_01897 - hypothetical protein, at 1,938,758 to 1,939,570 _01897 Position (kb) 1937 1938 1939Strain fitness (log2 ratio) -1 0 1at 1937.599 kb on - strand, within MPMX26_01894at 1938.772 kb on + strandat 1938.772 kb on + strandat 1938.782 kb on + strandat 1938.782 kb on + strandat 1938.783 kb on + strandat 1938.790 kb on + strandat 1938.830 kb on + strandat 1938.830 kb on + strandat 1938.835 kb on + strandat 1938.836 kb on + strandat 1938.861 kb on + strand, within MPMX26_01897at 1938.861 kb on + strand, within MPMX26_01897at 1938.914 kb on + strand, within MPMX26_01897at 1938.916 kb on + strand, within MPMX26_01897at 1938.933 kb on + strand, within MPMX26_01897at 1938.943 kb on + strand, within MPMX26_01897at 1938.951 kb on + strand, within MPMX26_01897at 1938.951 kb on + strand, within MPMX26_01897at 1938.993 kb on + strand, within MPMX26_01897at 1939.039 kb on + strand, within MPMX26_01897at 1939.092 kb on + strand, within MPMX26_01897at 1939.157 kb on + strand, within MPMX26_01897at 1939.157 kb on + strand, within MPMX26_01897at 1939.157 kb on + strand, within MPMX26_01897at 1939.157 kb on + strand, within MPMX26_01897at 1939.162 kb on + strand, within MPMX26_01897

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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1,937,599 - MPMX26_01894 0.76 -1.2
1,938,772 + +0.0
1,938,772 + -0.9
1,938,782 + -0.4
1,938,782 + -0.6
1,938,783 + +0.8
1,938,790 + -0.3
1,938,830 + -0.3
1,938,830 + -0.5
1,938,835 + -0.4
1,938,836 + -0.4
1,938,861 + MPMX26_01897 0.13 +0.1
1,938,861 + MPMX26_01897 0.13 -0.6
1,938,914 + MPMX26_01897 0.19 -0.8
1,938,916 + MPMX26_01897 0.19 -0.7
1,938,933 + MPMX26_01897 0.22 -0.3
1,938,943 + MPMX26_01897 0.23 -0.7
1,938,951 + MPMX26_01897 0.24 -0.3
1,938,951 + MPMX26_01897 0.24 -0.8
1,938,993 + MPMX26_01897 0.29 -0.6
1,939,039 + MPMX26_01897 0.35 -0.3
1,939,092 + MPMX26_01897 0.41 -0.3
1,939,157 + MPMX26_01897 0.49 -0.8
1,939,157 + MPMX26_01897 0.49 -0.4
1,939,157 + MPMX26_01897 0.49 -0.3
1,939,157 + MPMX26_01897 0.49 +0.1
1,939,162 + MPMX26_01897 0.50 -1.2

Or see this region's nucleotide sequence