Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01228

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01225 and MPMX26_01226 are separated by 14 nucleotidesMPMX26_01226 and MPMX26_01227 overlap by 11 nucleotidesMPMX26_01227 and MPMX26_01228 overlap by 4 nucleotidesMPMX26_01228 and MPMX26_01229 are separated by 22 nucleotides MPMX26_01225: MPMX26_01225 - hypothetical protein, at 1,299,345 to 1,299,953 _01225 MPMX26_01226: MPMX26_01226 - hypothetical protein, at 1,299,968 to 1,300,531 _01226 MPMX26_01227: MPMX26_01227 - hypothetical protein, at 1,300,521 to 1,300,907 _01227 MPMX26_01228: MPMX26_01228 - Type II secretion system protein J, at 1,300,904 to 1,301,539 _01228 MPMX26_01229: MPMX26_01229 - Type II secretion system protein K, at 1,301,562 to 1,302,506 _01229 Position (kb) 1300 1301 1302Strain fitness (log2 ratio) -1 0 1 2at 1299.911 kb on + strandat 1299.911 kb on + strandat 1299.911 kb on + strandat 1299.911 kb on + strandat 1299.911 kb on + strandat 1299.932 kb on + strandat 1299.932 kb on + strandat 1299.942 kb on + strandat 1299.965 kb on + strandat 1299.998 kb on + strandat 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.077 kb on + strand, within MPMX26_01226at 1300.082 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.087 kb on + strand, within MPMX26_01226at 1300.092 kb on + strand, within MPMX26_01226at 1300.102 kb on + strand, within MPMX26_01226at 1300.102 kb on + strand, within MPMX26_01226at 1300.159 kb on + strand, within MPMX26_01226at 1300.163 kb on + strand, within MPMX26_01226at 1300.163 kb on + strand, within MPMX26_01226at 1300.175 kb on + strand, within MPMX26_01226at 1300.180 kb on + strand, within MPMX26_01226at 1300.186 kb on + strand, within MPMX26_01226at 1300.390 kb on + strand, within MPMX26_01226at 1300.417 kb on + strand, within MPMX26_01226at 1300.438 kb on + strand, within MPMX26_01226at 1300.700 kb on + strand, within MPMX26_01227at 1300.709 kb on + strand, within MPMX26_01227at 1300.743 kb on + strand, within MPMX26_01227at 1300.823 kb on + strand, within MPMX26_01227at 1300.823 kb on + strand, within MPMX26_01227at 1300.831 kb on - strand, within MPMX26_01227at 1300.833 kb on + strand, within MPMX26_01227at 1300.930 kb on + strandat 1300.978 kb on + strand, within MPMX26_01228

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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1,299,911 + -0.3
1,299,911 + -0.2
1,299,911 + -0.0
1,299,911 + +0.2
1,299,911 + +0.3
1,299,932 + -0.3
1,299,932 + +0.4
1,299,942 + -0.1
1,299,965 + -0.1
1,299,998 + -0.4
1,300,077 + MPMX26_01226 0.19 -0.4
1,300,077 + MPMX26_01226 0.19 +0.9
1,300,077 + MPMX26_01226 0.19 -0.1
1,300,077 + MPMX26_01226 0.19 -0.4
1,300,077 + MPMX26_01226 0.19 +0.5
1,300,077 + MPMX26_01226 0.19 -0.5
1,300,077 + MPMX26_01226 0.19 -0.4
1,300,077 + MPMX26_01226 0.19 +2.1
1,300,077 + MPMX26_01226 0.19 -0.5
1,300,077 + MPMX26_01226 0.19 -0.1
1,300,077 + MPMX26_01226 0.19 -0.5
1,300,077 + MPMX26_01226 0.19 -0.9
1,300,077 + MPMX26_01226 0.19 -0.4
1,300,077 + MPMX26_01226 0.19 +0.4
1,300,077 + MPMX26_01226 0.19 +0.3
1,300,077 + MPMX26_01226 0.19 -0.2
1,300,077 + MPMX26_01226 0.19 +1.3
1,300,077 + MPMX26_01226 0.19 +0.6
1,300,077 + MPMX26_01226 0.19 +0.9
1,300,082 + MPMX26_01226 0.20 -0.3
1,300,087 + MPMX26_01226 0.21 -0.9
1,300,087 + MPMX26_01226 0.21 -0.2
1,300,087 + MPMX26_01226 0.21 +0.1
1,300,087 + MPMX26_01226 0.21 +0.1
1,300,087 + MPMX26_01226 0.21 -0.3
1,300,087 + MPMX26_01226 0.21 +0.3
1,300,087 + MPMX26_01226 0.21 -0.2
1,300,087 + MPMX26_01226 0.21 +0.5
1,300,087 + MPMX26_01226 0.21 -0.1
1,300,087 + MPMX26_01226 0.21 -0.2
1,300,087 + MPMX26_01226 0.21 -0.6
1,300,087 + MPMX26_01226 0.21 -0.3
1,300,087 + MPMX26_01226 0.21 +0.0
1,300,092 + MPMX26_01226 0.22 +0.1
1,300,102 + MPMX26_01226 0.24 +0.3
1,300,102 + MPMX26_01226 0.24 -0.5
1,300,159 + MPMX26_01226 0.34 +0.5
1,300,163 + MPMX26_01226 0.35 -0.2
1,300,163 + MPMX26_01226 0.35 -1.3
1,300,175 + MPMX26_01226 0.37 +0.2
1,300,180 + MPMX26_01226 0.38 +0.5
1,300,186 + MPMX26_01226 0.39 +0.3
1,300,390 + MPMX26_01226 0.75 +0.4
1,300,417 + MPMX26_01226 0.80 +0.5
1,300,438 + MPMX26_01226 0.83 -0.5
1,300,700 + MPMX26_01227 0.46 -1.5
1,300,709 + MPMX26_01227 0.49 +0.5
1,300,743 + MPMX26_01227 0.57 -0.3
1,300,823 + MPMX26_01227 0.78 -1.0
1,300,823 + MPMX26_01227 0.78 +0.9
1,300,831 - MPMX26_01227 0.80 -0.1
1,300,833 + MPMX26_01227 0.81 +1.8
1,300,930 + -0.4
1,300,978 + MPMX26_01228 0.12 -0.6

Or see this region's nucleotide sequence