Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01102

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01101 and MPMX26_01102 are separated by 293 nucleotidesMPMX26_01102 and MPMX26_01103 are separated by 3 nucleotidesMPMX26_01103 and MPMX26_01104 are separated by 49 nucleotides MPMX26_01101: MPMX26_01101 - Peptidoglycan-associated lipoprotein, at 1,173,469 to 1,174,929 _01101 MPMX26_01102: MPMX26_01102 - hypothetical protein, at 1,175,223 to 1,176,245 _01102 MPMX26_01103: MPMX26_01103 - hypothetical protein, at 1,176,249 to 1,177,115 _01103 MPMX26_01104: MPMX26_01104 - Carboxy-S-adenosyl-L-methionine synthase, at 1,177,165 to 1,177,839 _01104 Position (kb) 1175 1176 1177Strain fitness (log2 ratio) -1 0 1at 1174.577 kb on + strand, within MPMX26_01101at 1175.339 kb on + strand, within MPMX26_01102at 1175.354 kb on + strand, within MPMX26_01102at 1175.984 kb on + strand, within MPMX26_01102at 1176.065 kb on + strand, within MPMX26_01102at 1176.146 kb on + strandat 1176.177 kb on + strandat 1176.215 kb on + strandat 1176.372 kb on + strand, within MPMX26_01103at 1176.911 kb on + strand, within MPMX26_01103at 1177.029 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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1,174,577 + MPMX26_01101 0.76 +0.3
1,175,339 + MPMX26_01102 0.11 -0.3
1,175,354 + MPMX26_01102 0.13 -0.4
1,175,984 + MPMX26_01102 0.74 -0.2
1,176,065 + MPMX26_01102 0.82 -0.2
1,176,146 + -0.9
1,176,177 + +0.8
1,176,215 + -0.2
1,176,372 + MPMX26_01103 0.14 +0.7
1,176,911 + MPMX26_01103 0.76 +0.9
1,177,029 + +1.3

Or see this region's nucleotide sequence