Strain Fitness in Escherichia fergusonii Becca around EFB2_03679

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,844,466	+		EFB2_03678	0.11	+0.7
3,844,474	+		EFB2_03678	0.11	-2.2
3,844,500	+		EFB2_03678	0.14	-1.2
3,844,501	-		EFB2_03678	0.14	-0.1
3,844,512	+		EFB2_03678	0.15	-2.9
3,844,512	+		EFB2_03678	0.15	+1.3
3,844,512	+		EFB2_03678	0.15	+1.0
3,844,512	+		EFB2_03678	0.15	-1.7
3,844,512	+		EFB2_03678	0.15	-1.0
3,844,512	+		EFB2_03678	0.15	+0.6
3,844,512	+		EFB2_03678	0.15	-0.7
3,844,512	+		EFB2_03678	0.15	+1.4
3,844,513	-		EFB2_03678	0.15	+0.0
3,844,513	-		EFB2_03678	0.15	+0.8
3,844,513	-		EFB2_03678	0.15	-0.2
3,844,513	-		EFB2_03678	0.15	-0.7
3,844,554	-		EFB2_03678	0.19	+1.4
3,844,636	+		EFB2_03678	0.26	+0.2
3,844,636	+		EFB2_03678	0.26	+0.3
3,844,636	+		EFB2_03678	0.26	+1.2
3,844,637	-		EFB2_03678	0.26	-1.5
3,844,637	-		EFB2_03678	0.26	+0.8
3,844,644	+		EFB2_03678	0.27	+0.5
3,844,645	-		EFB2_03678	0.27	-1.8
3,844,652	+		EFB2_03678	0.28	-0.3
3,844,652	+		EFB2_03678	0.28	-0.1
3,844,652	+		EFB2_03678	0.28	+0.1
3,844,652	+		EFB2_03678	0.28	+0.1
3,844,653	-		EFB2_03678	0.28	-1.8
3,844,717	+		EFB2_03678	0.34	-1.1
3,844,718	-		EFB2_03678	0.34	+1.1
3,844,728	+		EFB2_03678	0.35	-2.4
3,844,741	+		EFB2_03678	0.36	+0.1
3,844,758	+		EFB2_03678	0.37	+0.4
3,844,758	+		EFB2_03678	0.37	-1.0
3,844,758	+		EFB2_03678	0.37	-0.3
3,844,759	-		EFB2_03678	0.37	+0.1
3,844,759	-		EFB2_03678	0.37	-0.2
3,844,759	-		EFB2_03678	0.37	-1.2
3,844,760	+		EFB2_03678	0.38	+0.7
3,844,771	+		EFB2_03678	0.39	-2.9
3,844,773	+		EFB2_03678	0.39	+1.3
3,844,773	+		EFB2_03678	0.39	+0.8
3,844,773	+		EFB2_03678	0.39	+0.2
3,844,773	+		EFB2_03678	0.39	+0.7
3,844,773	+		EFB2_03678	0.39	+1.0
3,844,773	+		EFB2_03678	0.39	-2.0
3,844,773	+		EFB2_03678	0.39	+1.7
3,844,773	+		EFB2_03678	0.39	+1.0
3,844,773	+		EFB2_03678	0.39	-1.4
3,844,773	+		EFB2_03678	0.39	-0.7
3,844,774	-		EFB2_03678	0.39	-0.4
3,844,774	-		EFB2_03678	0.39	+0.6
3,844,774	-		EFB2_03678	0.39	-0.3
3,844,774	-		EFB2_03678	0.39	+0.4
3,844,774	-		EFB2_03678	0.39	+0.2
3,844,774	-		EFB2_03678	0.39	+0.6
3,844,774	-		EFB2_03678	0.39	+1.3
3,844,774	-		EFB2_03678	0.39	+1.1
3,844,785	+		EFB2_03678	0.40	-0.5
3,844,785	+		EFB2_03678	0.40	-1.1
3,844,786	-		EFB2_03678	0.40	-0.5
3,844,793	+		EFB2_03678	0.41	-0.8
3,844,793	+		EFB2_03678	0.41	+2.3
3,844,793	+		EFB2_03678	0.41	-1.8
3,844,793	+		EFB2_03678	0.41	+0.2
3,844,793	+		EFB2_03678	0.41	-0.0
3,844,794	-		EFB2_03678	0.41	+2.4
3,844,794	-		EFB2_03678	0.41	+2.5
3,844,800	+		EFB2_03678	0.41	-1.1
3,844,800	+		EFB2_03678	0.41	-1.0
3,844,800	+		EFB2_03678	0.41	-0.8
3,844,800	+		EFB2_03678	0.41	+0.2
3,844,800	+		EFB2_03678	0.41	-0.5
3,844,800	+		EFB2_03678	0.41	-1.2
3,844,800	+		EFB2_03678	0.41	-0.3
3,844,801	-		EFB2_03678	0.41	+1.5
3,844,801	-		EFB2_03678	0.41	+0.6
3,844,801	-		EFB2_03678	0.41	+0.6
3,844,801	-		EFB2_03678	0.41	-2.8
3,844,801	-		EFB2_03678	0.41	-2.1
3,844,801	-		EFB2_03678	0.41	-1.9
3,844,804	+		EFB2_03678	0.42	+1.3
3,844,804	+		EFB2_03678	0.42	-0.0
3,844,804	+		EFB2_03678	0.42	+3.9
3,844,804	+		EFB2_03678	0.42	+0.7
3,844,804	+		EFB2_03678	0.42	-1.2
3,844,805	-		EFB2_03678	0.42	-0.5
3,844,805	-		EFB2_03678	0.42	-1.1
3,844,805	-		EFB2_03678	0.42	-3.3
3,844,805	-		EFB2_03678	0.42	+0.3
3,844,805	-		EFB2_03678	0.42	+1.4
3,844,852	+		EFB2_03678	0.46	-0.7
3,844,852	+		EFB2_03678	0.46	-3.0
3,844,853	-		EFB2_03678	0.46	-0.7
3,844,853	-		EFB2_03678	0.46	+1.0
3,844,873	-		EFB2_03678	0.48	+0.5
3,844,882	+		EFB2_03678	0.49	-1.3
3,844,882	+		EFB2_03678	0.49	+1.8
3,844,882	+		EFB2_03678	0.49	+2.6
3,844,882	+		EFB2_03678	0.49	+0.7
3,844,882	+		EFB2_03678	0.49	-3.0
3,844,882	+		EFB2_03678	0.49	+1.0
3,844,882	+		EFB2_03678	0.49	-1.8
3,844,882	+		EFB2_03678	0.49	-3.2
3,844,883	-		EFB2_03678	0.49	-2.4
3,844,883	-		EFB2_03678	0.49	+0.1
3,844,883	-		EFB2_03678	0.49	-3.1
3,844,883	-		EFB2_03678	0.49	+0.4
3,844,883	-		EFB2_03678	0.49	-1.2
3,844,883	-		EFB2_03678	0.49	+0.2
3,844,883	-		EFB2_03678	0.49	-1.9
3,844,883	-		EFB2_03678	0.49	-0.3
3,844,883	-		EFB2_03678	0.49	+0.1
3,844,883	-		EFB2_03678	0.49	-0.3
3,844,883	-		EFB2_03678	0.49	+0.7
3,844,883	-		EFB2_03678	0.49	-0.2
3,844,903	+		EFB2_03678	0.51	+0.8
3,844,903	+		EFB2_03678	0.51	+0.9
3,844,903	+		EFB2_03678	0.51	-0.0
3,845,017	+		EFB2_03678	0.61	-3.0
3,845,017	+		EFB2_03678	0.61	+1.3
3,845,030	+		EFB2_03678	0.62	-0.1
3,845,043	+		EFB2_03678	0.63	-1.9
3,845,043	+		EFB2_03678	0.63	+0.3
3,845,043	+		EFB2_03678	0.63	-1.3
3,845,043	+		EFB2_03678	0.63	-2.3
3,845,043	+		EFB2_03678	0.63	+0.7
3,845,043	+		EFB2_03678	0.63	-3.2
3,845,043	+		EFB2_03678	0.63	+0.4
3,845,080	+		EFB2_03678	0.67	-0.4
3,845,081	-		EFB2_03678	0.67	+0.9
3,845,150	+		EFB2_03678	0.73	-0.8
3,845,150	+		EFB2_03678	0.73	+0.3
3,845,150	+		EFB2_03678	0.73	+0.5
3,845,151	-		EFB2_03678	0.73	-1.1
3,845,179	-		EFB2_03678	0.76	+0.2
3,845,336	+				+0.6
3,845,336	+				-0.0
3,845,336	+				-0.7
3,845,337	-				+0.7
3,845,377	+				-0.3
3,845,377	+				-1.8
3,845,377	+				-1.4
3,845,377	+				-2.6
3,845,378	-				-0.7
3,845,378	-				+1.2
3,845,378	-				-0.3
3,845,378	-				-0.3
3,845,378	-				+1.3
3,845,378	-				+0.2
3,845,380	+				-2.9
3,845,380	+				+0.3
3,845,380	+				+1.2
3,845,380	+				-0.7
3,845,380	+				+0.1
3,845,380	+				-1.3
3,845,381	-				-0.0
3,845,381	-				-1.8
3,845,381	-				-3.4
3,845,381	-				+1.0
3,845,381	-				+0.3
3,845,381	-				+1.1
3,845,381	-				+0.7
3,845,390	+				-0.3
3,845,423	+				-0.9
3,845,424	-				+0.9
3,845,444	+				-1.0
3,845,444	+				+0.4
3,845,444	+				+1.0
3,845,444	+				-2.6
3,845,444	+				-0.6
3,845,444	+				-1.9
3,845,444	+				-0.0
3,845,444	+				-0.3
3,845,445	-				-1.3
3,845,445	-				+1.6
3,845,445	-				+0.6
3,845,445	-				-2.0
3,845,445	-				-0.9
3,845,445	-				-0.6
3,845,445	-				+1.0
3,845,445	-				+1.3
3,845,445	-				-0.9
3,845,445	-				+0.8
3,845,445	-				-0.7
3,845,445	-				+0.6
3,845,445	-				+0.7
3,845,445	-				-0.5
3,845,445	-				-2.0
3,845,445	-				+0.8
3,845,445	-				-0.0
3,845,457	+				-0.9
3,845,457	+				+1.3
3,845,458	-				-0.1
3,845,467	+				+1.9
3,845,467	+				+1.0
3,845,467	+				+0.7
3,845,468	-				+1.0
3,845,468	-				+0.7
3,845,468	-				-1.7
3,845,474	+				+1.8
3,845,474	+				-0.1
3,845,474	+				-1.3
3,845,475	-				+0.3
3,845,475	-				+2.6
3,845,529	+				+1.5
3,845,529	+				-0.1
3,845,529	+				+0.6
3,845,529	+				-1.9
3,845,529	+				+1.3
3,845,529	+				+0.7
3,845,529	+				-3.4
3,845,529	+				-0.5
3,845,530	-				+0.6
3,845,530	-				-1.1
3,845,530	-				-2.0
3,845,530	-				-1.9
3,845,530	-				+0.6
3,845,530	-				-0.1
3,845,530	-				-2.8
3,845,530	-				-1.3
3,845,530	-				+1.6
3,845,530	-				+1.2
3,845,530	-				+0.7
3,845,533	+				-0.7
3,845,533	+				+0.2
3,845,533	+				-0.8
3,845,533	+				+0.4
3,845,533	+				+1.2
3,845,533	+				-0.7
3,845,533	+				-1.4
3,845,533	+				+1.7
3,845,533	+				+1.0
3,845,533	+				+1.0
3,845,534	-				+0.1
3,845,534	-				-2.0
3,845,534	-				-2.7
3,845,534	-				+0.2
3,845,534	-				-0.1
3,845,534	-				+0.3
3,845,534	-				+0.9
3,845,534	-				-0.4
3,845,566	+				+0.5
3,845,566	+				+0.8
3,845,567	-				-0.2
3,845,567	-				+0.6
3,845,567	-				-2.2
3,845,608	+		EFB2_03679	0.12	-3.6
3,845,608	+		EFB2_03679	0.12	+0.8
3,845,609	-		EFB2_03679	0.13	-0.7
3,845,611	+		EFB2_03679	0.13	-0.3
3,845,611	+		EFB2_03679	0.13	-0.2
3,845,611	+		EFB2_03679	0.13	+0.7
3,845,611	+		EFB2_03679	0.13	+0.3
3,845,611	+		EFB2_03679	0.13	+0.4
3,845,611	+		EFB2_03679	0.13	+1.1
3,845,611	+		EFB2_03679	0.13	-2.9
3,845,611	+		EFB2_03679	0.13	-0.4
3,845,612	-		EFB2_03679	0.13	-1.5
3,845,612	-		EFB2_03679	0.13	+0.5
3,845,612	-		EFB2_03679	0.13	-3.8
3,845,612	-		EFB2_03679	0.13	-1.3
3,845,612	-		EFB2_03679	0.13	+0.4
3,845,612	-		EFB2_03679	0.13	-1.4
3,845,612	-		EFB2_03679	0.13	+0.6
3,845,612	-		EFB2_03679	0.13	-0.8
3,845,635	+		EFB2_03679	0.15	-3.6
3,845,635	+		EFB2_03679	0.15	-0.7
3,845,636	-		EFB2_03679	0.15	+1.2
3,845,636	-		EFB2_03679	0.15	-0.1
3,845,636	-		EFB2_03679	0.15	-1.1
3,845,636	-		EFB2_03679	0.15	-0.7
3,845,636	-		EFB2_03679	0.15	-0.1
3,845,700	+		EFB2_03679	0.20	+0.8
3,845,700	+		EFB2_03679	0.20	-0.0
3,845,700	+		EFB2_03679	0.20	+0.6
3,845,701	-		EFB2_03679	0.20	-1.4
3,845,701	-		EFB2_03679	0.20	-0.5
3,845,701	-		EFB2_03679	0.20	-2.0
3,845,724	+		EFB2_03679	0.22	-0.8
3,845,724	+		EFB2_03679	0.22	-1.0
3,845,724	+		EFB2_03679	0.22	+0.2
3,845,724	+		EFB2_03679	0.22	-0.2
3,845,724	+		EFB2_03679	0.22	-3.6
3,845,724	+		EFB2_03679	0.22	-0.7
3,845,724	+		EFB2_03679	0.22	-0.5
3,845,724	+		EFB2_03679	0.22	-0.8
3,845,724	+		EFB2_03679	0.22	+1.2
3,845,724	+		EFB2_03679	0.22	-0.9
3,845,724	+		EFB2_03679	0.22	+0.6
3,845,724	+		EFB2_03679	0.22	-0.4
3,845,724	+		EFB2_03679	0.22	+1.7
3,845,724	+		EFB2_03679	0.22	-0.7
3,845,724	+		EFB2_03679	0.22	+0.3
3,845,724	+		EFB2_03679	0.22	+0.2
3,845,724	+		EFB2_03679	0.22	-1.4
3,845,725	-		EFB2_03679	0.22	+0.0
3,845,725	-		EFB2_03679	0.22	+2.3
3,845,725	-		EFB2_03679	0.22	-0.1
3,845,725	-		EFB2_03679	0.22	-0.8
3,845,725	-		EFB2_03679	0.22	-0.8
3,845,725	-		EFB2_03679	0.22	+0.4
3,845,725	-		EFB2_03679	0.22	+0.5
3,845,725	-		EFB2_03679	0.22	+0.3
3,845,725	-		EFB2_03679	0.22	+1.8
3,845,725	-		EFB2_03679	0.22	+0.9
3,845,725	-		EFB2_03679	0.22	+0.1
3,845,725	-		EFB2_03679	0.22	-1.6
3,845,725	-		EFB2_03679	0.22	+0.4
3,845,725	-		EFB2_03679	0.22	+0.2
3,845,725	-		EFB2_03679	0.22	-1.0
3,845,725	-		EFB2_03679	0.22	-0.6
3,845,725	-		EFB2_03679	0.22	-0.6
3,845,725	-		EFB2_03679	0.22	-0.6
3,845,725	-		EFB2_03679	0.22	+0.5
3,845,725	-		EFB2_03679	0.22	+0.3
3,845,725	-		EFB2_03679	0.22	-3.2
3,845,725	-		EFB2_03679	0.22	-0.3
3,845,725	-		EFB2_03679	0.22	-3.7
3,845,725	-		EFB2_03679	0.22	-0.0
3,845,728	+		EFB2_03679	0.22	+1.6
3,845,728	+		EFB2_03679	0.22	-0.7
3,845,728	+		EFB2_03679	0.22	-0.6
3,845,728	+		EFB2_03679	0.22	+1.3
3,845,728	+		EFB2_03679	0.22	-0.3
3,845,728	+		EFB2_03679	0.22	-3.3
3,845,728	+		EFB2_03679	0.22	-2.3
3,845,728	+		EFB2_03679	0.22	-2.9
3,845,728	+		EFB2_03679	0.22	+1.4
3,845,728	+		EFB2_03679	0.22	+0.5
3,845,728	+		EFB2_03679	0.22	+1.1
3,845,728	+		EFB2_03679	0.22	-2.3
3,845,728	+		EFB2_03679	0.22	-1.6
3,845,728	+		EFB2_03679	0.22	+0.9
3,845,728	+		EFB2_03679	0.22	-0.1
3,845,728	+		EFB2_03679	0.22	+0.6
3,845,728	+		EFB2_03679	0.22	-1.6
3,845,728	+		EFB2_03679	0.22	-1.1
3,845,728	+		EFB2_03679	0.22	+1.4
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