Strain Fitness in Escherichia fergusonii Becca around EFB2_03075

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,212,938	+		EFB2_03074	0.32	-2.0
3,212,938	+		EFB2_03074	0.32	-1.0
3,212,938	+		EFB2_03074	0.32	+0.4
3,212,938	+		EFB2_03074	0.32	-2.2
3,212,965	+		EFB2_03074	0.34	-1.0
3,212,989	+		EFB2_03074	0.36	-1.5
3,212,990	-		EFB2_03074	0.36	-1.4
3,212,997	-		EFB2_03074	0.36	-0.4
3,213,032	+		EFB2_03074	0.39	-2.8
3,213,032	+		EFB2_03074	0.39	-1.4
3,213,032	+		EFB2_03074	0.39	+0.0
3,213,033	-		EFB2_03074	0.39	-2.9
3,213,062	+		EFB2_03074	0.41	+1.1
3,213,063	-		EFB2_03074	0.41	+0.4
3,213,063	-		EFB2_03074	0.41	+0.4
3,213,063	-		EFB2_03074	0.41	-0.9
3,213,063	-		EFB2_03074	0.41	-0.2
3,213,063	-		EFB2_03074	0.41	-0.2
3,213,079	+		EFB2_03074	0.42	-1.6
3,213,079	+		EFB2_03074	0.42	+0.6
3,213,080	-		EFB2_03074	0.42	-2.2
3,213,080	-		EFB2_03074	0.42	-0.5
3,213,080	-		EFB2_03074	0.42	+1.6
3,213,080	-		EFB2_03074	0.42	+2.2
3,213,083	+		EFB2_03074	0.43	+1.0
3,213,083	+		EFB2_03074	0.43	-0.9
3,213,083	+		EFB2_03074	0.43	-0.1
3,213,106	+		EFB2_03074	0.44	+2.6
3,213,107	-		EFB2_03074	0.44	-2.5
3,213,119	-		EFB2_03074	0.45	-1.2
3,213,124	+		EFB2_03074	0.46	-2.3
3,213,124	+		EFB2_03074	0.46	-1.2
3,213,124	+		EFB2_03074	0.46	+1.8
3,213,124	+		EFB2_03074	0.46	-0.9
3,213,124	+		EFB2_03074	0.46	-2.7
3,213,124	+		EFB2_03074	0.46	+1.1
3,213,124	+		EFB2_03074	0.46	-0.6
3,213,125	-		EFB2_03074	0.46	+1.9
3,213,125	-		EFB2_03074	0.46	+0.3
3,213,125	-		EFB2_03074	0.46	-2.8
3,213,125	-		EFB2_03074	0.46	-0.6
3,213,144	+		EFB2_03074	0.47	-1.1
3,213,144	+		EFB2_03074	0.47	-0.8
3,213,144	+		EFB2_03074	0.47	+0.6
3,213,145	-		EFB2_03074	0.47	-1.6
3,213,145	-		EFB2_03074	0.47	+1.1
3,213,145	-		EFB2_03074	0.47	+0.0
3,213,145	-		EFB2_03074	0.47	-0.3
3,213,145	-		EFB2_03074	0.47	-3.4
3,213,166	+		EFB2_03074	0.49	+1.1
3,213,167	-		EFB2_03074	0.49	+0.1
3,213,167	-		EFB2_03074	0.49	-0.0
3,213,167	-		EFB2_03074	0.49	-0.6
3,213,192	-		EFB2_03074	0.51	-0.4
3,213,248	+		EFB2_03074	0.55	+0.8
3,213,248	+		EFB2_03074	0.55	-0.3
3,213,249	-		EFB2_03074	0.55	+1.1
3,213,249	-		EFB2_03074	0.55	-0.6
3,213,307	+		EFB2_03074	0.59	-1.4
3,213,308	-		EFB2_03074	0.60	-0.6
3,213,347	+		EFB2_03074	0.62	-1.0
3,213,347	+		EFB2_03074	0.62	+1.5
3,213,347	+		EFB2_03074	0.62	+0.8
3,213,348	-		EFB2_03074	0.63	+1.3
3,213,357	+		EFB2_03074	0.63	+0.2
3,213,357	+		EFB2_03074	0.63	-1.0
3,213,357	+		EFB2_03074	0.63	-0.3
3,213,357	+		EFB2_03074	0.63	-0.0
3,213,357	+		EFB2_03074	0.63	+0.7
3,213,357	+		EFB2_03074	0.63	+0.5
3,213,357	+		EFB2_03074	0.63	-1.2
3,213,357	+		EFB2_03074	0.63	-0.5
3,213,357	+		EFB2_03074	0.63	+3.4
3,213,357	+		EFB2_03074	0.63	+0.4
3,213,357	+		EFB2_03074	0.63	+0.6
3,213,357	+		EFB2_03074	0.63	-2.4
3,213,357	+		EFB2_03074	0.63	-0.8
3,213,357	+		EFB2_03074	0.63	-1.0
3,213,357	+		EFB2_03074	0.63	+0.4
3,213,357	+		EFB2_03074	0.63	-1.4
3,213,357	+		EFB2_03074	0.63	-1.7
3,213,357	+		EFB2_03074	0.63	+1.0
3,213,357	+		EFB2_03074	0.63	-0.3
3,213,357	+		EFB2_03074	0.63	-1.4
3,213,357	+		EFB2_03074	0.63	-0.6
3,213,358	-		EFB2_03074	0.63	+0.3
3,213,358	-		EFB2_03074	0.63	+0.3
3,213,358	-		EFB2_03074	0.63	+0.6
3,213,358	-		EFB2_03074	0.63	-0.1
3,213,358	-		EFB2_03074	0.63	-0.2
3,213,358	-		EFB2_03074	0.63	+2.0
3,213,358	-		EFB2_03074	0.63	+0.3
3,213,358	-		EFB2_03074	0.63	-0.9
3,213,358	-		EFB2_03074	0.63	+0.4
3,213,358	-		EFB2_03074	0.63	+0.9
3,213,358	-		EFB2_03074	0.63	+2.4
3,213,358	-		EFB2_03074	0.63	-0.4
3,213,358	-		EFB2_03074	0.63	-1.4
3,213,358	-		EFB2_03074	0.63	+0.7
3,213,358	-		EFB2_03074	0.63	+0.1
3,213,358	-		EFB2_03074	0.63	-2.5
3,213,358	-		EFB2_03074	0.63	-0.7
3,213,358	-		EFB2_03074	0.63	+1.4
3,213,358	-		EFB2_03074	0.63	+0.9
3,213,359	+		EFB2_03074	0.63	+0.2
3,213,360	-		EFB2_03074	0.63	-0.4
3,213,360	-		EFB2_03074	0.63	-0.9
3,213,360	-		EFB2_03074	0.63	-0.1
3,213,376	+		EFB2_03074	0.65	+0.9
3,213,377	-		EFB2_03074	0.65	-2.5
3,213,427	+		EFB2_03074	0.68	-2.4
3,213,428	-		EFB2_03074	0.69	-2.3
3,213,435	+		EFB2_03074	0.69	-0.4
3,213,435	+		EFB2_03074	0.69	+0.4
3,213,436	-		EFB2_03074	0.69	-2.4
3,213,436	-		EFB2_03074	0.69	+0.7
3,213,436	-		EFB2_03074	0.69	-1.5
3,213,436	-		EFB2_03074	0.69	+1.0
3,213,436	-		EFB2_03074	0.69	-4.0
3,213,436	-		EFB2_03074	0.69	-0.5
3,213,436	-		EFB2_03074	0.69	+0.9
3,213,447	-		EFB2_03074	0.70	+0.4
3,213,447	-		EFB2_03074	0.70	-0.2
3,213,474	+		EFB2_03074	0.72	-1.1
3,213,554	+		EFB2_03074	0.78	-1.5
3,213,554	+		EFB2_03074	0.78	+0.2
3,213,554	+		EFB2_03074	0.78	-2.3
3,213,554	+		EFB2_03074	0.78	-0.5
3,213,554	+		EFB2_03074	0.78	-1.3
3,213,554	+		EFB2_03074	0.78	+1.1
3,213,555	-		EFB2_03074	0.78	-1.0
3,213,555	-		EFB2_03074	0.78	-1.9
3,213,555	-		EFB2_03074	0.78	-0.9
3,213,555	-		EFB2_03074	0.78	-0.3
3,213,557	+		EFB2_03074	0.78	+1.4
3,213,557	+		EFB2_03074	0.78	-0.6
3,213,557	+		EFB2_03074	0.78	-0.7
3,213,557	+		EFB2_03074	0.78	-0.3
3,213,557	+		EFB2_03074	0.78	-1.5
3,213,557	+		EFB2_03074	0.78	-0.8
3,213,558	-		EFB2_03074	0.78	+0.9
3,213,558	-		EFB2_03074	0.78	+2.8
3,213,558	-		EFB2_03074	0.78	-0.2
3,213,558	-		EFB2_03074	0.78	-0.2
3,213,558	-		EFB2_03074	0.78	-0.5
3,213,558	-		EFB2_03074	0.78	+0.2
3,213,558	-		EFB2_03074	0.78	-3.2
3,213,558	-		EFB2_03074	0.78	+0.1
3,213,558	-		EFB2_03074	0.78	-2.0
3,213,558	-		EFB2_03074	0.78	+1.9
3,213,652	+		EFB2_03074	0.85	+0.5
3,213,666	-		EFB2_03074	0.86	+1.1
3,213,666	-		EFB2_03074	0.86	-2.3
3,213,674	+		EFB2_03074	0.87	+0.9
3,213,675	-		EFB2_03074	0.87	+1.8
3,213,675	-		EFB2_03074	0.87	-2.4
3,213,691	+		EFB2_03074	0.88	-1.1
3,213,691	+		EFB2_03074	0.88	-2.6
3,213,691	+		EFB2_03074	0.88	-1.7
3,213,692	-		EFB2_03074	0.88	+0.0
3,213,692	-		EFB2_03074	0.88	+1.0
3,213,734	+				+2.2
3,213,734	+				-0.0
3,213,735	-				-0.4
3,213,735	-				-1.2
3,213,735	-				+0.6
3,213,735	-				+1.5
3,213,735	-				-0.1
3,213,753	-				-1.9
3,213,753	-				-3.2
3,213,753	-				+2.2
3,213,791	-				-0.5
3,213,843	+				-0.8
3,213,843	+				-1.6
3,213,843	+				+0.3
3,213,843	+				-0.7
3,213,844	-				+0.6
3,213,892	+				-0.5
3,213,892	+				-0.9
3,213,893	-				-3.7
3,213,893	-				+0.6
3,213,929	+				+1.3
3,213,929	+				-0.4
3,213,930	-				+0.7
3,213,930	-				-1.5
3,213,930	-				-0.0
3,213,930	-				-0.6
3,213,942	+				+2.3
3,213,942	+				-0.7
3,214,035	+		EFB2_03075	0.61	+0.9
3,214,122	+				-0.2
3,214,122	+				+0.3
3,214,122	+				-1.9
3,214,122	+				-2.5
3,214,122	+				-4.4
3,214,122	+				-1.7
3,214,122	+				+2.1
3,214,122	+				+1.2
3,214,122	+				+1.4
3,214,122	+				+1.1
3,214,122	+				-2.8
3,214,122	+				+0.1
3,214,122	+				+1.6
3,214,122	+				-1.3
3,214,122	+				-0.1
3,214,122	+				-2.9
3,214,122	+				+1.1
3,214,122	+				+3.2
3,214,123	-				-3.2
3,214,123	-				-0.5
3,214,123	-				+0.2
3,214,123	-				-0.2
3,214,123	-				+0.9
3,214,123	-				-0.9
3,214,123	-				-1.5
3,214,123	-				-2.4
3,214,123	-				+0.2
3,214,123	-				-2.8
3,214,123	-				-1.4
3,214,123	-				-0.1
3,214,123	-				+0.9
3,214,123	-				-1.6
3,214,123	-				+0.1
3,214,131	+				-0.8
3,214,131	+				+2.1
3,214,131	+				+0.5
3,214,131	+				+1.1
3,214,131	+				-0.6
3,214,131	+				+1.2
3,214,131	+				+0.2
3,214,131	+				-0.2
3,214,131	+				-1.0
3,214,131	+				-0.3
3,214,131	+				-2.1
3,214,131	+				-0.6
3,214,131	+				+1.6
3,214,132	-				-0.9
3,214,132	-				+1.1
3,214,132	-				-2.9
3,214,132	-				+1.4
3,214,132	-				+0.1
3,214,132	-				+0.8
3,214,138	+				+1.7
3,214,138	+				-1.1
3,214,138	+				+0.8
3,214,138	+				+1.1
3,214,138	+				+0.1
3,214,138	+				-3.7
3,214,138	+				+0.8
3,214,139	-				+1.2
3,214,139	-				-0.5
3,214,139	-				+2.7
3,214,139	-				-1.7
3,214,139	-				-1.5
3,214,139	-				+0.3
3,214,144	+				+2.4
3,214,145	-				+0.4
3,214,145	-				+0.3
3,214,154	+				+0.9
3,214,154	+				+0.4
3,214,154	+				-0.4
3,214,168	+				+0.8
3,214,187	+				+0.4
3,214,187	+				+0.3
3,214,187	+				-0.7
3,214,187	+				+1.5
3,214,187	+				+0.4
3,214,187	+				-0.9
3,214,187	+				+1.5
3,214,187	+				-1.5
3,214,188	-				-1.8
3,214,188	-				-0.8
3,214,188	-				-0.5
3,214,188	-				+1.4
3,214,193	+				+1.3
3,214,194	-				-1.5
3,214,194	-				+0.2
3,214,194	-				+1.2
3,214,194	-				-1.6
3,214,194	-				+1.6
3,214,225	+				-1.3
3,214,225	+				+0.8
3,214,226	-				-2.8
3,214,226	-				+0.6
3,214,226	-				-1.7
3,214,226	-				-1.2
3,214,229	-				-2.5
3,214,255	+				+1.7
3,214,255	+				-1.7
3,214,255	+				-0.2
3,214,255	+				-0.8
3,214,255	+				-1.2
3,214,255	+				+0.1
3,214,255	+				-2.8
3,214,256	-				-2.6
3,214,256	-				+0.3
3,214,256	-				+0.3
3,214,256	-				-0.3
3,214,256	-				+1.2
3,214,259	+				+0.6
3,214,259	+				+1.0
3,214,259	+				-0.1
3,214,260	-				+0.4
3,214,260	-				-0.5
3,214,272	-				+0.2
3,214,272	-				-2.0
3,214,272	-				-0.3
3,214,272	-				+2.8
3,214,275	+				-1.6
3,214,275	+				+0.8
3,214,276	-				+0.2
3,214,276	-				-0.8
3,214,277	+				-1.6
3,214,282	-				-1.2
3,214,292	+				+1.2
3,214,293	-				+1.4
3,214,293	-				+0.1
3,214,298	+				-0.8
3,214,299	-				+1.2
3,214,366	-				-1.9
3,214,366	-				-0.6
3,214,374	+				+0.3
3,214,412	+				-2.1
3,214,412	+				-0.7
3,214,412	+				+1.4
3,214,413	-				-2.2
3,214,413	-				+1.0
3,214,413	-				-0.1
3,214,418	+				+1.0
3,214,419	-				+1.8
3,214,419	-				-0.2
3,214,422	+				+0.0
3,214,422	+				+0.8
3,214,422	+				-0.9
3,214,422	+				+1.0
3,214,422	+				-3.7
3,214,422	+				+0.3
3,214,422	+				-0.5
3,214,423	-				+1.1
3,214,423	-				+1.3
3,214,423	-				+0.9
3,214,423	-				+0.8
3,214,423	-				-0.8
3,214,423	-				-0.5
3,214,423	-				-0.9
3,214,423	-				-0.4
3,214,423	-				+0.5
3,214,447	+				-0.1
3,214,447	+				-1.6
3,214,453	+				+0.5
3,214,453	+				+1.5
3,214,453	+				-0.1
3,214,453	+				+1.7
3,214,453	+				+1.1
3,214,453	+				+0.2
3,214,454	-				-2.5
3,214,454	-				-2.2
3,214,454	-				-1.1
3,214,454	-				+0.3
3,214,454	-				+1.6
3,214,454	-				-0.3
3,214,454	-				+0.7
3,214,495	+				-3.1
3,214,495	+				+0.7
3,214,495	+				-0.2
3,214,495	+				+1.0
3,214,496	-				-0.6
3,214,498	+				+0.1
3,214,498	+				-1.8
3,214,498	+				+3.1
3,214,499	-				+1.1
3,214,507	+				-1.7
3,214,507	+				-1.1
3,214,507	+				+1.1
3,214,507	+				-0.2
3,214,507	+				+1.3
3,214,507	+				+1.8
3,214,507	+				-0.7
3,214,507	+				-0.8
3,214,507	+				+0.4
3,214,508	-				-0.7
3,214,508	-				-1.5
3,214,508	-				-0.5
3,214,508	-				+0.7
3,214,508	-				-1.1
3,214,508	-				+0.8
3,214,515	+				-2.8
3,214,515	+				-1.8
3,214,515	+				+0.9
3,214,515	+				-0.4
3,214,515	+				-1.0
3,214,516	-				+2.0
3,214,516	-				-0.4
3,214,516	-				-0.6
3,214,581	+		EFB2_03076	0.18	+0.6
3,214,589	+		EFB2_03076	0.19	+0.8
3,214,613	+		EFB2_03076	0.23	-0.2
3,214,613	+		EFB2_03076	0.23	-1.1
3,214,614	-		EFB2_03076	0.23	-0.4
3,214,614	-		EFB2_03076	0.23	-1.1
3,214,632	+		EFB2_03076	0.26	-0.9
3,214,689	+		EFB2_03076	0.36	+0.5
3,214,689	+		EFB2_03076	0.36	+1.5
3,214,689	+		EFB2_03076	0.36	-0.0
3,214,690	-		EFB2_03076	0.36	-0.9
3,214,699	-		EFB2_03076	0.38	-1.1
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3,214,699	-		EFB2_03076	0.38	-0.8
3,214,699	-		EFB2_03076	0.38	+0.8
3,214,699	-		EFB2_03076	0.38	+0.0
3,214,699	-		EFB2_03076	0.38	+1.1
3,214,705	-		EFB2_03076	0.39	-2.9
3,214,716	+		EFB2_03076	0.41	+0.1
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3,214,780	+		EFB2_03076	0.51	-0.1
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3,214,806	+		EFB2_03076	0.56	+3.1
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3,214,806	+		EFB2_03076	0.56	+0.3
3,214,806	+		EFB2_03076	0.56	+0.3
3,214,806	+		EFB2_03076	0.56	-0.4
3,214,807	-		EFB2_03076	0.56	+1.2
3,214,901	-		EFB2_03076	0.72	-0.1
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3,215,013	+				+1.1
3,215,013	+				+1.4
3,215,013	+				+0.2
3,215,013	+				-0.9
3,215,013	+				-2.2
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3,215,013	+				-0.4
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3,215,014	-				+1.5
3,215,014	-				-2.9
3,215,035	+				+0.3
3,215,035	+				+0.3
3,215,035	+				+1.9
3,215,035	+				+0.3
3,215,035	+				+0.6
3,215,035	+				-1.4
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3,215,035	+				-0.0
3,215,035	+				-1.9
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3,215,036	-				+1.6
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3,215,036	-				-1.5
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3,215,086	+				+0.3
3,215,086	+				+0.6
3,215,087	-				-0.6