Strain Fitness in Escherichia fergusonii Becca around EFB2_01779

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,881,428	+		EFB2_01778	0.32	+0.5
1,881,428	+		EFB2_01778	0.32	-1.2
1,881,428	+		EFB2_01778	0.32	+0.5
1,881,428	+		EFB2_01778	0.32	+0.5
1,881,428	+		EFB2_01778	0.32	+1.7
1,881,429	-		EFB2_01778	0.32	-1.8
1,881,429	-		EFB2_01778	0.32	-2.9
1,881,435	-		EFB2_01778	0.33	-0.9
1,881,435	-		EFB2_01778	0.33	+0.1
1,881,467	+		EFB2_01778	0.35	+1.7
1,881,541	+		EFB2_01778	0.40	-0.4
1,881,541	+		EFB2_01778	0.40	-0.1
1,881,541	+		EFB2_01778	0.40	-1.7
1,881,541	+		EFB2_01778	0.40	+0.7
1,881,541	+		EFB2_01778	0.40	-1.4
1,881,541	+		EFB2_01778	0.40	+2.2
1,881,565	+		EFB2_01778	0.42	+1.5
1,881,565	+		EFB2_01778	0.42	-0.4
1,881,565	+		EFB2_01778	0.42	+0.3
1,881,566	-		EFB2_01778	0.42	+0.1
1,881,566	-		EFB2_01778	0.42	-2.2
1,881,566	-		EFB2_01778	0.42	-0.8
1,881,566	-		EFB2_01778	0.42	+1.7
1,881,604	+		EFB2_01778	0.45	+0.7
1,881,605	-		EFB2_01778	0.45	+1.1
1,881,605	-		EFB2_01778	0.45	-0.3
1,881,605	-		EFB2_01778	0.45	-2.8
1,881,646	+		EFB2_01778	0.48	-0.8
1,881,647	-		EFB2_01778	0.48	-0.4
1,881,647	-		EFB2_01778	0.48	-1.0
1,881,647	-		EFB2_01778	0.48	-1.2
1,881,666	+		EFB2_01778	0.49	-1.5
1,881,666	+		EFB2_01778	0.49	-0.4
1,881,666	+		EFB2_01778	0.49	+0.6
1,881,666	+		EFB2_01778	0.49	+2.2
1,881,667	-		EFB2_01778	0.49	-0.5
1,881,667	-		EFB2_01778	0.49	+0.2
1,881,680	+		EFB2_01778	0.50	+0.2
1,881,680	+		EFB2_01778	0.50	-0.6
1,881,680	+		EFB2_01778	0.50	-0.9
1,881,680	+		EFB2_01778	0.50	-0.0
1,881,681	-		EFB2_01778	0.50	-2.2
1,881,730	+		EFB2_01778	0.54	-2.6
1,881,730	+		EFB2_01778	0.54	+1.4
1,881,730	+		EFB2_01778	0.54	+0.5
1,881,730	+		EFB2_01778	0.54	-0.3
1,881,730	+		EFB2_01778	0.54	-0.7
1,881,731	-		EFB2_01778	0.54	-1.1
1,881,731	-		EFB2_01778	0.54	-2.1
1,881,736	+		EFB2_01778	0.54	-1.5
1,881,737	-		EFB2_01778	0.54	-1.8
1,881,758	+		EFB2_01778	0.56	+0.1
1,881,758	+		EFB2_01778	0.56	+0.7
1,881,758	+		EFB2_01778	0.56	+0.6
1,881,825	+		EFB2_01778	0.60	+0.7
1,881,825	+		EFB2_01778	0.60	+2.2
1,881,825	+		EFB2_01778	0.60	+1.9
1,881,825	+		EFB2_01778	0.60	+0.7
1,881,825	+		EFB2_01778	0.60	-1.1
1,881,825	+		EFB2_01778	0.60	-1.9
1,881,825	+		EFB2_01778	0.60	-0.6
1,881,825	+		EFB2_01778	0.60	+1.1
1,881,825	+		EFB2_01778	0.60	+3.0
1,881,826	-		EFB2_01778	0.60	-0.2
1,881,826	-		EFB2_01778	0.60	+0.8
1,881,826	-		EFB2_01778	0.60	-1.2
1,881,826	-		EFB2_01778	0.60	-2.9
1,881,826	-		EFB2_01778	0.60	-0.8
1,881,826	-		EFB2_01778	0.60	-0.3
1,881,826	-		EFB2_01778	0.60	-3.2
1,881,836	+		EFB2_01778	0.61	-0.0
1,881,836	+		EFB2_01778	0.61	-2.5
1,881,862	+		EFB2_01778	0.63	-0.2
1,881,909	+		EFB2_01778	0.66	-1.4
1,881,910	-		EFB2_01778	0.66	-3.0
1,881,910	-		EFB2_01778	0.66	+0.5
1,881,910	-		EFB2_01778	0.66	+0.6
1,881,991	+		EFB2_01778	0.72	-2.6
1,881,991	+		EFB2_01778	0.72	-0.4
1,881,991	+		EFB2_01778	0.72	-0.3
1,881,991	+		EFB2_01778	0.72	+1.6
1,881,991	+		EFB2_01778	0.72	-0.9
1,881,991	+		EFB2_01778	0.72	+0.4
1,881,991	+		EFB2_01778	0.72	-1.1
1,881,991	+		EFB2_01778	0.72	-2.2
1,881,991	+		EFB2_01778	0.72	+0.3
1,881,991	+		EFB2_01778	0.72	-2.4
1,881,991	+		EFB2_01778	0.72	+3.4
1,881,992	-		EFB2_01778	0.72	+1.1
1,881,992	-		EFB2_01778	0.72	-0.8
1,881,992	-		EFB2_01778	0.72	-1.4
1,881,992	-		EFB2_01778	0.72	-0.1
1,881,992	-		EFB2_01778	0.72	-0.3
1,881,992	-		EFB2_01778	0.72	-0.6
1,881,992	-		EFB2_01778	0.72	+0.6
1,881,992	-		EFB2_01778	0.72	+1.1
1,881,992	-		EFB2_01778	0.72	+1.9
1,881,992	-		EFB2_01778	0.72	+0.5
1,881,993	+		EFB2_01778	0.72	-0.1
1,881,993	+		EFB2_01778	0.72	+0.3
1,881,993	+		EFB2_01778	0.72	-3.7
1,881,993	+		EFB2_01778	0.72	-1.7
1,881,993	+		EFB2_01778	0.72	+1.7
1,881,993	+		EFB2_01778	0.72	+2.0
1,881,993	+		EFB2_01778	0.72	-2.0
1,881,993	+		EFB2_01778	0.72	-1.4
1,881,993	+		EFB2_01778	0.72	+1.1
1,881,993	+		EFB2_01778	0.72	-0.2
1,881,993	+		EFB2_01778	0.72	+0.4
1,881,993	+		EFB2_01778	0.72	-0.1
1,881,993	+		EFB2_01778	0.72	+0.2
1,881,993	+		EFB2_01778	0.72	-0.0
1,881,993	+		EFB2_01778	0.72	-1.1
1,881,993	+		EFB2_01778	0.72	+0.6
1,881,993	+		EFB2_01778	0.72	-0.4
1,881,993	+		EFB2_01778	0.72	-1.4
1,881,993	+		EFB2_01778	0.72	-2.4
1,881,993	+		EFB2_01778	0.72	-2.5
1,881,993	+		EFB2_01778	0.72	+2.7
1,881,994	-		EFB2_01778	0.72	-1.9
1,881,994	-		EFB2_01778	0.72	+1.6
1,881,994	-		EFB2_01778	0.72	+1.0
1,881,994	-		EFB2_01778	0.72	-1.1
1,881,994	-		EFB2_01778	0.72	+0.3
1,881,994	-		EFB2_01778	0.72	+1.8
1,881,994	-		EFB2_01778	0.72	+2.4
1,881,994	-		EFB2_01778	0.72	-0.7
1,881,994	-		EFB2_01778	0.72	-0.9
1,881,994	-		EFB2_01778	0.72	-0.9
1,881,994	-		EFB2_01778	0.72	+0.3
1,881,994	-		EFB2_01778	0.72	+0.3
1,881,994	-		EFB2_01778	0.72	-0.5
1,881,994	-		EFB2_01778	0.72	-0.6
1,881,994	-		EFB2_01778	0.72	-1.1
1,881,994	-		EFB2_01778	0.72	+0.1
1,881,994	-		EFB2_01778	0.72	-0.2
1,882,132	+		EFB2_01778	0.82	+1.1
1,882,132	+		EFB2_01778	0.82	-0.4
1,882,133	-		EFB2_01778	0.82	+0.7
1,882,159	+		EFB2_01778	0.84	-3.0
1,882,223	+		EFB2_01778	0.88	+1.3
1,882,223	+		EFB2_01778	0.88	+0.4
1,882,223	+		EFB2_01778	0.88	-0.3
1,882,223	+		EFB2_01778	0.88	-1.4
1,882,223	+		EFB2_01778	0.88	-3.1
1,882,224	-		EFB2_01778	0.88	-2.3
1,882,224	-		EFB2_01778	0.88	-3.9
1,882,224	-		EFB2_01778	0.88	+0.4
1,882,224	-		EFB2_01778	0.88	-1.9
1,882,224	-		EFB2_01778	0.88	+0.2
1,882,227	+		EFB2_01778	0.89	+0.1
1,882,227	+		EFB2_01778	0.89	+0.7
1,882,227	+		EFB2_01778	0.89	-2.6
1,882,227	+		EFB2_01778	0.89	-1.4
1,882,227	+		EFB2_01778	0.89	-1.9
1,882,227	+		EFB2_01778	0.89	+1.0
1,882,227	+		EFB2_01778	0.89	-3.4
1,882,227	+		EFB2_01778	0.89	+0.9
1,882,227	+		EFB2_01778	0.89	-1.2
1,882,227	+		EFB2_01778	0.89	+0.2
1,882,227	+		EFB2_01778	0.89	-1.8
1,882,227	+		EFB2_01778	0.89	+0.2
1,882,227	+		EFB2_01778	0.89	+1.2
1,882,227	+		EFB2_01778	0.89	-4.0
1,882,227	+		EFB2_01778	0.89	+1.6
1,882,227	+		EFB2_01778	0.89	+0.3
1,882,227	+		EFB2_01778	0.89	-1.4
1,882,227	+		EFB2_01778	0.89	+1.1
1,882,227	+		EFB2_01778	0.89	-2.4
1,882,228	-		EFB2_01778	0.89	+2.3
1,882,228	-		EFB2_01778	0.89	+1.2
1,882,228	-		EFB2_01778	0.89	-0.9
1,882,228	-		EFB2_01778	0.89	+0.9
1,882,228	-		EFB2_01778	0.89	-0.2
1,882,228	-		EFB2_01778	0.89	-0.9
1,882,228	-		EFB2_01778	0.89	-0.8
1,882,228	-		EFB2_01778	0.89	-1.6
1,882,228	-		EFB2_01778	0.89	+0.0
1,882,228	-		EFB2_01778	0.89	+0.2
1,882,228	-		EFB2_01778	0.89	+1.7
1,882,228	-		EFB2_01778	0.89	+1.8
1,882,228	-		EFB2_01778	0.89	+0.4
1,882,228	-		EFB2_01778	0.89	-0.4
1,882,228	-		EFB2_01778	0.89	+1.2
1,882,228	-		EFB2_01778	0.89	-2.0
1,882,228	-		EFB2_01778	0.89	-1.1
1,882,228	-		EFB2_01778	0.89	-1.4
1,882,228	-		EFB2_01778	0.89	-0.0
1,882,228	-		EFB2_01778	0.89	-0.7
1,882,228	-		EFB2_01778	0.89	+1.4
1,882,228	-		EFB2_01778	0.89	+1.3
1,882,228	-		EFB2_01778	0.89	+1.4
1,882,228	-		EFB2_01778	0.89	-0.9
1,882,228	-		EFB2_01778	0.89	-0.5
1,882,249	+				-1.4
1,882,249	+				+1.0
1,882,249	+				-2.0
1,882,249	+				+0.3
1,882,250	-				+1.6
1,882,250	-				+0.4
1,882,250	-				-2.1
1,882,250	-				-0.6
1,882,250	-				-1.2
1,882,250	-				-0.2
1,882,250	-				+0.1
1,882,250	-				-1.5
1,882,327	+				+1.1
1,882,327	+				+0.3
1,882,328	-				+1.5
1,882,328	-				+0.1
1,882,328	-				-2.2
1,882,389	+				-0.3
1,882,390	-				-0.0
1,882,390	-				-0.3
1,882,408	+				-2.3
1,882,452	+				+0.5
1,882,452	+				+2.7
1,882,452	+				+1.7
1,882,452	+				-0.4
1,882,452	+				+0.2
1,882,453	-				+0.2
1,882,453	-				-1.5
1,882,453	-				+0.2
1,882,453	-				+0.9
1,882,453	-				-0.7
1,882,453	-				-0.1
1,882,453	-				-2.1
1,882,453	-				+2.0
1,882,468	+				+2.6
1,882,468	+				+0.6
1,882,469	-				-1.4
1,882,469	-				+0.4
1,882,469	-				-0.5
1,882,469	-				+1.0
1,882,469	-				-0.9
1,882,469	-				-0.5
1,882,470	+				-0.3
1,882,470	+				+2.0
1,882,470	+				-0.9
1,882,470	+				-0.4
1,882,470	+				-0.0
1,882,470	+				+1.5
1,882,470	+				-1.1
1,882,471	-				+0.6
1,882,471	-				-0.4
1,882,471	-				-1.3
1,882,471	-				-1.6
1,882,471	-				+0.6
1,882,471	-				-0.4
1,882,471	-				-0.0
1,882,471	-				-1.1
1,882,471	-				+1.2
1,882,471	-				+1.3
1,882,559	+				+0.8
1,882,559	+				-3.0
1,882,560	-				-2.6
1,882,595	-				-0.3
1,882,595	-				-1.6
1,882,595	-				+0.3
1,882,595	-				+1.1
1,882,595	-				+0.1
1,882,595	-				-0.8
1,882,595	-				+1.0
1,882,603	+				-1.2
1,882,603	+				+0.7
1,882,603	+				+1.3
1,882,603	+				-2.3
1,882,640	-				+1.7
1,882,699	+		EFB2_01779	0.10	-2.8
1,882,699	+		EFB2_01779	0.10	-0.0
1,882,699	+		EFB2_01779	0.10	+0.6
1,882,699	+		EFB2_01779	0.10	+1.6
1,882,699	+		EFB2_01779	0.10	+1.0
1,882,700	-		EFB2_01779	0.10	-1.8
1,882,700	-		EFB2_01779	0.10	+0.2
1,882,700	-		EFB2_01779	0.10	+1.2
1,882,700	-		EFB2_01779	0.10	-2.1
1,882,700	-		EFB2_01779	0.10	-0.7
1,882,727	+		EFB2_01779	0.11	-1.0
1,882,730	+		EFB2_01779	0.11	-0.2
1,882,730	+		EFB2_01779	0.11	-1.3
1,882,730	+		EFB2_01779	0.11	-0.3
1,882,730	+		EFB2_01779	0.11	+1.3
1,882,730	+		EFB2_01779	0.11	+0.2
1,882,731	-		EFB2_01779	0.11	+0.5
1,882,731	-		EFB2_01779	0.11	-1.4
1,882,731	-		EFB2_01779	0.11	-0.7
1,882,731	-		EFB2_01779	0.11	-1.4
1,882,742	+		EFB2_01779	0.12	-0.6
1,882,743	-		EFB2_01779	0.12	-0.3
1,882,754	+		EFB2_01779	0.12	+1.0
1,882,754	+		EFB2_01779	0.12	-1.6
1,882,754	+		EFB2_01779	0.12	-0.1
1,882,754	+		EFB2_01779	0.12	-2.6
1,882,755	-		EFB2_01779	0.12	-0.4
1,882,755	-		EFB2_01779	0.12	-0.5
1,882,815	-		EFB2_01779	0.14	+0.7
1,882,845	+		EFB2_01779	0.15	+0.1
1,882,845	+		EFB2_01779	0.15	-0.1
1,882,845	+		EFB2_01779	0.15	-0.7
1,882,845	+		EFB2_01779	0.15	-1.7
1,882,845	+		EFB2_01779	0.15	+1.4
1,882,845	+		EFB2_01779	0.15	-0.6
1,882,845	+		EFB2_01779	0.15	-1.0
1,882,845	+		EFB2_01779	0.15	-0.2
1,882,845	+		EFB2_01779	0.15	-0.4
1,882,845	+		EFB2_01779	0.15	-1.7
1,882,846	-		EFB2_01779	0.15	-1.3
1,882,846	-		EFB2_01779	0.15	-1.0
1,882,846	-		EFB2_01779	0.15	-1.9
1,882,846	-		EFB2_01779	0.15	-1.7
1,882,846	-		EFB2_01779	0.15	+2.2
1,882,846	-		EFB2_01779	0.15	+1.2
1,882,846	-		EFB2_01779	0.15	-2.0
1,882,846	-		EFB2_01779	0.15	-1.0
1,882,846	-		EFB2_01779	0.15	+0.2
1,882,846	-		EFB2_01779	0.15	-0.0
1,882,846	-		EFB2_01779	0.15	+0.3
1,882,846	-		EFB2_01779	0.15	-0.8
1,882,846	-		EFB2_01779	0.15	+0.2
1,882,846	-		EFB2_01779	0.15	-1.9
1,882,869	-		EFB2_01779	0.16	-0.4
1,882,869	-		EFB2_01779	0.16	+1.8
1,882,869	-		EFB2_01779	0.16	+0.2
1,882,869	-		EFB2_01779	0.16	-0.4
1,882,873	+		EFB2_01779	0.16	-0.5
1,882,873	+		EFB2_01779	0.16	+0.2
1,882,873	+		EFB2_01779	0.16	-1.4
1,882,873	+		EFB2_01779	0.16	-3.1
1,882,873	+		EFB2_01779	0.16	-0.4
1,882,873	+		EFB2_01779	0.16	-0.8
1,882,873	+		EFB2_01779	0.16	+0.3
1,882,873	+		EFB2_01779	0.16	-0.4
1,882,873	+		EFB2_01779	0.16	+0.7
1,882,873	+		EFB2_01779	0.16	+1.3
1,882,873	+		EFB2_01779	0.16	-2.0
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