Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04679

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04675 and BACOVA_04676 are separated by 103 nucleotidesBACOVA_04676 and BACOVA_04677 are separated by 42 nucleotidesBACOVA_04677 and BACOVA_04678 are separated by 71 nucleotidesBACOVA_04678 and BACOVA_04679 are separated by 18 nucleotidesBACOVA_04679 and BACOVA_04680 are separated by 11 nucleotidesBACOVA_04680 and BACOVA_04681 are separated by 16 nucleotidesBACOVA_04681 and BACOVA_04682 are separated by 61 nucleotidesBACOVA_04682 and BACOVA_04683 overlap by 53 nucleotides BACOVA_04675: BACOVA_04675 - hypothetical protein, at 54,041 to 54,160 _04675 BACOVA_04676: BACOVA_04676 - hypothetical protein, at 54,264 to 54,374 _04676 BACOVA_04677: BACOVA_04677 - hypothetical protein, at 54,417 to 54,545 _04677 BACOVA_04678: BACOVA_04678 - hypothetical protein, at 54,617 to 54,910 _04678 BACOVA_04679: BACOVA_04679 - hypothetical protein, at 54,929 to 55,105 _04679 BACOVA_04680: BACOVA_04680 - hypothetical protein, at 55,117 to 55,443 _04680 BACOVA_04681: BACOVA_04681 - hypothetical protein, at 55,460 to 55,717 _04681 BACOVA_04682: BACOVA_04682 - hypothetical protein, at 55,779 to 56,093 _04682 BACOVA_04683: BACOVA_04683 - hypothetical protein, at 56,041 to 56,244 _04683 Position (kb) 54 55 56Strain fitness (log2 ratio) -1 0 1 2at 53.974 kb on + strandat 54.056 kb on + strand, within BACOVA_04675at 54.145 kb on + strand, within BACOVA_04675at 54.146 kb on - strand, within BACOVA_04675at 54.161 kb on + strandat 54.162 kb on - strandat 54.163 kb on + strandat 54.164 kb on - strandat 54.171 kb on + strandat 54.172 kb on - strandat 54.174 kb on - strandat 54.177 kb on + strandat 54.188 kb on - strandat 54.188 kb on - strandat 54.192 kb on + strandat 54.197 kb on + strandat 54.197 kb on + strandat 54.198 kb on - strandat 54.199 kb on + strandat 54.200 kb on - strandat 54.201 kb on + strandat 54.201 kb on + strandat 54.201 kb on + strandat 54.202 kb on - strandat 54.202 kb on - strandat 54.202 kb on - strandat 54.202 kb on - strandat 54.202 kb on - strandat 54.203 kb on + strandat 54.208 kb on + strandat 54.209 kb on - strandat 54.209 kb on - strandat 54.209 kb on - strandat 54.212 kb on - strandat 54.217 kb on - strandat 54.221 kb on + strandat 54.248 kb on - strandat 54.253 kb on + strandat 54.256 kb on - strandat 54.256 kb on - strandat 54.290 kb on - strand, within BACOVA_04676at 54.319 kb on - strand, within BACOVA_04676at 54.338 kb on + strand, within BACOVA_04676at 54.412 kb on - strandat 54.494 kb on - strand, within BACOVA_04677at 54.525 kb on + strand, within BACOVA_04677at 54.526 kb on - strand, within BACOVA_04677at 54.526 kb on - strand, within BACOVA_04677at 54.569 kb on - strandat 54.580 kb on + strandat 54.603 kb on + strandat 54.610 kb on + strandat 54.721 kb on + strand, within BACOVA_04678at 54.721 kb on + strand, within BACOVA_04678at 54.795 kb on + strand, within BACOVA_04678at 54.842 kb on + strand, within BACOVA_04678at 54.860 kb on + strand, within BACOVA_04678at 54.929 kb on - strandat 54.929 kb on - strandat 54.933 kb on - strandat 54.982 kb on + strand, within BACOVA_04679at 55.044 kb on + strand, within BACOVA_04679at 55.044 kb on - strand, within BACOVA_04679at 55.045 kb on - strand, within BACOVA_04679at 55.051 kb on + strand, within BACOVA_04679at 55.052 kb on - strand, within BACOVA_04679at 55.127 kb on + strandat 55.127 kb on + strandat 55.128 kb on - strandat 55.154 kb on + strand, within BACOVA_04680at 55.362 kb on + strand, within BACOVA_04680at 55.362 kb on + strand, within BACOVA_04680at 55.362 kb on + strand, within BACOVA_04680at 55.372 kb on + strand, within BACOVA_04680at 55.411 kb on + strandat 55.431 kb on - strandat 55.434 kb on - strandat 55.439 kb on + strandat 55.440 kb on - strandat 55.440 kb on - strandat 55.442 kb on - strandat 55.493 kb on + strand, within BACOVA_04681at 55.494 kb on - strand, within BACOVA_04681at 55.506 kb on + strand, within BACOVA_04681at 55.518 kb on - strand, within BACOVA_04681at 55.526 kb on - strand, within BACOVA_04681at 55.526 kb on - strand, within BACOVA_04681at 55.587 kb on + strand, within BACOVA_04681at 55.644 kb on + strand, within BACOVA_04681at 55.670 kb on - strand, within BACOVA_04681at 55.721 kb on + strandat 55.722 kb on - strandat 55.775 kb on - strandat 55.780 kb on + strandat 55.965 kb on - strand, within BACOVA_04682at 56.073 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
remove
53,974 + +0.2
54,056 + BACOVA_04675 0.12 +0.7
54,145 + BACOVA_04675 0.87 +1.0
54,146 - BACOVA_04675 0.88 +1.1
54,161 + -0.2
54,162 - +0.4
54,163 + -1.4
54,164 - +0.2
54,171 + -0.5
54,172 - +0.8
54,174 - +0.7
54,177 + -0.6
54,188 - -1.2
54,188 - -0.9
54,192 + +0.2
54,197 + +0.3
54,197 + -0.2
54,198 - +0.5
54,199 + +0.3
54,200 - -1.2
54,201 + +0.4
54,201 + -1.3
54,201 + -0.7
54,202 - -1.0
54,202 - -1.3
54,202 - +0.6
54,202 - -0.1
54,202 - -0.0
54,203 + +1.2
54,208 + -0.9
54,209 - -1.0
54,209 - +0.6
54,209 - +1.1
54,212 - -1.4
54,217 - +0.4
54,221 + +0.2
54,248 - -0.9
54,253 + +0.0
54,256 - +0.5
54,256 - +1.4
54,290 - BACOVA_04676 0.23 -0.4
54,319 - BACOVA_04676 0.50 -0.8
54,338 + BACOVA_04676 0.67 +0.2
54,412 - +0.5
54,494 - BACOVA_04677 0.60 +2.0
54,525 + BACOVA_04677 0.84 +1.7
54,526 - BACOVA_04677 0.84 +1.1
54,526 - BACOVA_04677 0.84 +0.2
54,569 - +1.6
54,580 + +1.0
54,603 + +0.2
54,610 + +2.0
54,721 + BACOVA_04678 0.35 +0.1
54,721 + BACOVA_04678 0.35 +0.2
54,795 + BACOVA_04678 0.61 -0.8
54,842 + BACOVA_04678 0.77 +0.2
54,860 + BACOVA_04678 0.83 +0.7
54,929 - -0.3
54,929 - -1.0
54,933 - +0.6
54,982 + BACOVA_04679 0.30 -0.3
55,044 + BACOVA_04679 0.65 +0.5
55,044 - BACOVA_04679 0.65 +0.9
55,045 - BACOVA_04679 0.66 +1.3
55,051 + BACOVA_04679 0.69 -0.5
55,052 - BACOVA_04679 0.69 -0.6
55,127 + -0.2
55,127 + -0.0
55,128 - -0.8
55,154 + BACOVA_04680 0.11 +0.3
55,362 + BACOVA_04680 0.75 -0.1
55,362 + BACOVA_04680 0.75 +0.1
55,362 + BACOVA_04680 0.75 +0.5
55,372 + BACOVA_04680 0.78 +0.6
55,411 + +0.2
55,431 - +0.5
55,434 - +0.3
55,439 + +0.4
55,440 - -0.5
55,440 - +0.1
55,442 - +0.3
55,493 + BACOVA_04681 0.13 -0.5
55,494 - BACOVA_04681 0.13 -0.1
55,506 + BACOVA_04681 0.18 -0.1
55,518 - BACOVA_04681 0.22 -1.0
55,526 - BACOVA_04681 0.26 -0.0
55,526 - BACOVA_04681 0.26 -0.6
55,587 + BACOVA_04681 0.49 +0.2
55,644 + BACOVA_04681 0.71 +0.5
55,670 - BACOVA_04681 0.81 -0.5
55,721 + +0.5
55,722 - +0.6
55,775 - -0.1
55,780 + +0.0
55,965 - BACOVA_04682 0.59 -0.1
56,073 + -0.7

Or see this region's nucleotide sequence