Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04340

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04339 and BACOVA_04340 are separated by 90 nucleotidesBACOVA_04340 and BACOVA_04341 overlap by 4 nucleotides BACOVA_04339: BACOVA_04339 - arylsulfatase, at 225,562 to 227,028 _04339 BACOVA_04340: BACOVA_04340 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 227,119 to 228,969 _04340 BACOVA_04341: BACOVA_04341 - histidine kinase A domain protein, at 228,966 to 230,921 _04341 Position (kb) 227 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 226.125 kb on + strand, within BACOVA_04339at 226.125 kb on + strand, within BACOVA_04339at 226.126 kb on - strand, within BACOVA_04339at 226.126 kb on - strand, within BACOVA_04339at 226.161 kb on + strand, within BACOVA_04339at 226.196 kb on + strand, within BACOVA_04339at 226.196 kb on + strand, within BACOVA_04339at 226.236 kb on + strand, within BACOVA_04339at 226.249 kb on + strand, within BACOVA_04339at 226.249 kb on + strand, within BACOVA_04339at 226.249 kb on + strand, within BACOVA_04339at 226.249 kb on + strand, within BACOVA_04339at 226.249 kb on + strand, within BACOVA_04339at 226.249 kb on + strand, within BACOVA_04339at 226.249 kb on + strand, within BACOVA_04339at 226.307 kb on - strand, within BACOVA_04339at 226.337 kb on - strand, within BACOVA_04339at 226.339 kb on - strand, within BACOVA_04339at 226.339 kb on - strand, within BACOVA_04339at 226.370 kb on + strand, within BACOVA_04339at 226.384 kb on + strand, within BACOVA_04339at 226.416 kb on + strand, within BACOVA_04339at 226.419 kb on + strand, within BACOVA_04339at 226.502 kb on + strand, within BACOVA_04339at 226.510 kb on - strand, within BACOVA_04339at 226.551 kb on - strand, within BACOVA_04339at 226.560 kb on - strand, within BACOVA_04339at 226.560 kb on - strand, within BACOVA_04339at 226.572 kb on + strand, within BACOVA_04339at 226.573 kb on - strand, within BACOVA_04339at 226.573 kb on - strand, within BACOVA_04339at 226.653 kb on + strand, within BACOVA_04339at 226.690 kb on + strand, within BACOVA_04339at 226.691 kb on - strand, within BACOVA_04339at 226.691 kb on - strand, within BACOVA_04339at 226.723 kb on + strand, within BACOVA_04339at 226.723 kb on + strand, within BACOVA_04339at 226.724 kb on - strand, within BACOVA_04339at 226.743 kb on + strand, within BACOVA_04339at 226.743 kb on + strand, within BACOVA_04339at 226.743 kb on + strand, within BACOVA_04339at 226.744 kb on - strand, within BACOVA_04339at 226.744 kb on - strand, within BACOVA_04339at 226.748 kb on + strand, within BACOVA_04339at 226.763 kb on - strand, within BACOVA_04339at 226.763 kb on - strand, within BACOVA_04339at 226.769 kb on - strand, within BACOVA_04339at 226.802 kb on + strand, within BACOVA_04339at 226.802 kb on + strand, within BACOVA_04339at 226.803 kb on - strand, within BACOVA_04339at 226.804 kb on + strand, within BACOVA_04339at 226.805 kb on - strand, within BACOVA_04339at 226.805 kb on - strand, within BACOVA_04339at 226.805 kb on - strand, within BACOVA_04339at 226.805 kb on - strand, within BACOVA_04339at 226.858 kb on + strand, within BACOVA_04339at 226.940 kb on + strandat 226.940 kb on + strandat 226.969 kb on - strandat 227.057 kb on + strandat 227.095 kb on - strandat 227.095 kb on - strandat 227.113 kb on + strandat 227.139 kb on + strandat 227.140 kb on - strandat 227.141 kb on + strandat 227.165 kb on + strandat 227.166 kb on - strandat 227.180 kb on + strandat 227.180 kb on + strandat 227.181 kb on - strandat 227.181 kb on - strandat 227.229 kb on - strandat 227.237 kb on - strandat 227.251 kb on - strandat 227.310 kb on - strand, within BACOVA_04340at 227.337 kb on - strand, within BACOVA_04340at 227.417 kb on + strand, within BACOVA_04340at 227.444 kb on - strand, within BACOVA_04340at 227.469 kb on - strand, within BACOVA_04340at 227.484 kb on + strand, within BACOVA_04340at 227.489 kb on - strand, within BACOVA_04340at 227.530 kb on - strand, within BACOVA_04340at 227.577 kb on + strand, within BACOVA_04340at 227.621 kb on - strand, within BACOVA_04340at 227.621 kb on - strand, within BACOVA_04340at 227.639 kb on + strand, within BACOVA_04340at 227.639 kb on + strand, within BACOVA_04340at 227.640 kb on - strand, within BACOVA_04340at 227.762 kb on + strand, within BACOVA_04340at 227.767 kb on + strand, within BACOVA_04340at 227.768 kb on - strand, within BACOVA_04340at 227.769 kb on + strand, within BACOVA_04340at 227.771 kb on + strand, within BACOVA_04340at 227.772 kb on - strand, within BACOVA_04340at 227.772 kb on - strand, within BACOVA_04340at 227.813 kb on - strand, within BACOVA_04340at 227.829 kb on + strand, within BACOVA_04340at 227.834 kb on - strand, within BACOVA_04340at 227.840 kb on - strand, within BACOVA_04340at 227.840 kb on - strand, within BACOVA_04340at 227.851 kb on + strand, within BACOVA_04340at 227.852 kb on - strand, within BACOVA_04340at 227.883 kb on - strand, within BACOVA_04340at 227.883 kb on - strand, within BACOVA_04340at 227.900 kb on + strand, within BACOVA_04340at 227.945 kb on + strand, within BACOVA_04340at 227.945 kb on - strand, within BACOVA_04340at 227.966 kb on + strand, within BACOVA_04340at 227.967 kb on - strand, within BACOVA_04340at 227.970 kb on + strand, within BACOVA_04340at 227.970 kb on + strand, within BACOVA_04340at 227.971 kb on - strand, within BACOVA_04340at 228.008 kb on - strand, within BACOVA_04340at 228.025 kb on + strand, within BACOVA_04340at 228.025 kb on + strand, within BACOVA_04340at 228.052 kb on + strand, within BACOVA_04340at 228.055 kb on - strand, within BACOVA_04340at 228.096 kb on + strand, within BACOVA_04340at 228.097 kb on - strand, within BACOVA_04340at 228.116 kb on + strand, within BACOVA_04340at 228.162 kb on - strand, within BACOVA_04340at 228.162 kb on - strand, within BACOVA_04340at 228.167 kb on + strand, within BACOVA_04340at 228.182 kb on + strand, within BACOVA_04340at 228.399 kb on + strand, within BACOVA_04340at 228.399 kb on + strand, within BACOVA_04340at 228.400 kb on - strand, within BACOVA_04340at 228.496 kb on + strand, within BACOVA_04340at 228.496 kb on + strand, within BACOVA_04340at 228.630 kb on - strand, within BACOVA_04340at 228.630 kb on - strand, within BACOVA_04340at 228.638 kb on + strand, within BACOVA_04340at 228.641 kb on + strand, within BACOVA_04340at 228.856 kb on - strandat 228.879 kb on - strandat 228.935 kb on - strandat 228.994 kb on + strandat 228.995 kb on - strandat 229.076 kb on - strandat 229.086 kb on - strandat 229.124 kb on - strandat 229.145 kb on + strandat 229.153 kb on - strandat 229.201 kb on - strand, within BACOVA_04341at 229.222 kb on - strand, within BACOVA_04341at 229.222 kb on - strand, within BACOVA_04341at 229.222 kb on - strand, within BACOVA_04341at 229.222 kb on - strand, within BACOVA_04341at 229.222 kb on - strand, within BACOVA_04341at 229.226 kb on + strand, within BACOVA_04341at 229.239 kb on + strand, within BACOVA_04341at 229.239 kb on + strand, within BACOVA_04341at 229.240 kb on - strand, within BACOVA_04341at 229.240 kb on - strand, within BACOVA_04341at 229.247 kb on + strand, within BACOVA_04341at 229.248 kb on - strand, within BACOVA_04341at 229.251 kb on - strand, within BACOVA_04341at 229.313 kb on - strand, within BACOVA_04341at 229.356 kb on + strand, within BACOVA_04341at 229.357 kb on - strand, within BACOVA_04341at 229.375 kb on - strand, within BACOVA_04341at 229.431 kb on - strand, within BACOVA_04341at 229.433 kb on + strand, within BACOVA_04341at 229.433 kb on + strand, within BACOVA_04341at 229.443 kb on - strand, within BACOVA_04341at 229.446 kb on - strand, within BACOVA_04341at 229.455 kb on + strand, within BACOVA_04341at 229.470 kb on - strand, within BACOVA_04341at 229.476 kb on + strand, within BACOVA_04341at 229.477 kb on - strand, within BACOVA_04341at 229.477 kb on - strand, within BACOVA_04341at 229.507 kb on + strand, within BACOVA_04341at 229.507 kb on + strand, within BACOVA_04341at 229.565 kb on + strand, within BACOVA_04341at 229.585 kb on + strand, within BACOVA_04341at 229.585 kb on + strand, within BACOVA_04341at 229.585 kb on + strand, within BACOVA_04341at 229.586 kb on - strand, within BACOVA_04341at 229.662 kb on - strand, within BACOVA_04341at 229.708 kb on + strand, within BACOVA_04341at 229.709 kb on - strand, within BACOVA_04341at 229.709 kb on - strand, within BACOVA_04341at 229.710 kb on + strand, within BACOVA_04341at 229.710 kb on + strand, within BACOVA_04341at 229.738 kb on - strand, within BACOVA_04341at 229.741 kb on - strand, within BACOVA_04341at 229.741 kb on - strand, within BACOVA_04341at 229.773 kb on + strand, within BACOVA_04341at 229.774 kb on - strand, within BACOVA_04341at 229.819 kb on - strand, within BACOVA_04341at 229.828 kb on - strand, within BACOVA_04341at 229.828 kb on - strand, within BACOVA_04341at 229.829 kb on + strand, within BACOVA_04341at 229.830 kb on - strand, within BACOVA_04341at 229.840 kb on - strand, within BACOVA_04341at 229.860 kb on + strand, within BACOVA_04341at 229.948 kb on - strand, within BACOVA_04341

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
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226,125 + BACOVA_04339 0.38 +0.1
226,125 + BACOVA_04339 0.38 +0.6
226,126 - BACOVA_04339 0.38 +0.6
226,126 - BACOVA_04339 0.38 -0.4
226,161 + BACOVA_04339 0.41 -1.7
226,196 + BACOVA_04339 0.43 -0.5
226,196 + BACOVA_04339 0.43 -0.2
226,236 + BACOVA_04339 0.46 -0.9
226,249 + BACOVA_04339 0.47 +0.5
226,249 + BACOVA_04339 0.47 -0.8
226,249 + BACOVA_04339 0.47 -0.1
226,249 + BACOVA_04339 0.47 +0.2
226,249 + BACOVA_04339 0.47 -0.9
226,249 + BACOVA_04339 0.47 -2.1
226,249 + BACOVA_04339 0.47 +0.3
226,307 - BACOVA_04339 0.51 -0.3
226,337 - BACOVA_04339 0.53 -0.3
226,339 - BACOVA_04339 0.53 -0.5
226,339 - BACOVA_04339 0.53 +1.6
226,370 + BACOVA_04339 0.55 -2.3
226,384 + BACOVA_04339 0.56 -1.5
226,416 + BACOVA_04339 0.58 -0.2
226,419 + BACOVA_04339 0.58 -0.7
226,502 + BACOVA_04339 0.64 -0.8
226,510 - BACOVA_04339 0.65 -2.1
226,551 - BACOVA_04339 0.67 -0.8
226,560 - BACOVA_04339 0.68 +0.0
226,560 - BACOVA_04339 0.68 +0.0
226,572 + BACOVA_04339 0.69 +1.7
226,573 - BACOVA_04339 0.69 -0.5
226,573 - BACOVA_04339 0.69 -0.1
226,653 + BACOVA_04339 0.74 -0.3
226,690 + BACOVA_04339 0.77 +0.3
226,691 - BACOVA_04339 0.77 +0.8
226,691 - BACOVA_04339 0.77 -1.1
226,723 + BACOVA_04339 0.79 -0.0
226,723 + BACOVA_04339 0.79 -0.3
226,724 - BACOVA_04339 0.79 +0.9
226,743 + BACOVA_04339 0.81 -0.9
226,743 + BACOVA_04339 0.81 +0.2
226,743 + BACOVA_04339 0.81 +0.3
226,744 - BACOVA_04339 0.81 +1.4
226,744 - BACOVA_04339 0.81 -0.3
226,748 + BACOVA_04339 0.81 -0.2
226,763 - BACOVA_04339 0.82 -1.1
226,763 - BACOVA_04339 0.82 -0.8
226,769 - BACOVA_04339 0.82 -0.5
226,802 + BACOVA_04339 0.85 +0.4
226,802 + BACOVA_04339 0.85 +0.6
226,803 - BACOVA_04339 0.85 -1.2
226,804 + BACOVA_04339 0.85 -1.5
226,805 - BACOVA_04339 0.85 -0.1
226,805 - BACOVA_04339 0.85 +0.7
226,805 - BACOVA_04339 0.85 -0.9
226,805 - BACOVA_04339 0.85 -0.9
226,858 + BACOVA_04339 0.88 -0.5
226,940 + +1.3
226,940 + +0.3
226,969 - +0.3
227,057 + +0.0
227,095 - +0.5
227,095 - +0.6
227,113 + +0.1
227,139 + -0.3
227,140 - -0.9
227,141 + -0.2
227,165 + +0.2
227,166 - -0.3
227,180 + -2.4
227,180 + +0.4
227,181 - +0.3
227,181 - -0.1
227,229 - +0.7
227,237 - +1.0
227,251 - -0.0
227,310 - BACOVA_04340 0.10 +0.3
227,337 - BACOVA_04340 0.12 -1.9
227,417 + BACOVA_04340 0.16 -0.4
227,444 - BACOVA_04340 0.18 -0.7
227,469 - BACOVA_04340 0.19 +1.9
227,484 + BACOVA_04340 0.20 +0.3
227,489 - BACOVA_04340 0.20 +0.1
227,530 - BACOVA_04340 0.22 -1.2
227,577 + BACOVA_04340 0.25 -0.2
227,621 - BACOVA_04340 0.27 +0.9
227,621 - BACOVA_04340 0.27 -1.2
227,639 + BACOVA_04340 0.28 -1.1
227,639 + BACOVA_04340 0.28 +0.9
227,640 - BACOVA_04340 0.28 +0.5
227,762 + BACOVA_04340 0.35 -1.1
227,767 + BACOVA_04340 0.35 +0.2
227,768 - BACOVA_04340 0.35 -2.2
227,769 + BACOVA_04340 0.35 -1.3
227,771 + BACOVA_04340 0.35 +0.2
227,772 - BACOVA_04340 0.35 +0.6
227,772 - BACOVA_04340 0.35 -1.9
227,813 - BACOVA_04340 0.37 -0.8
227,829 + BACOVA_04340 0.38 +1.2
227,834 - BACOVA_04340 0.39 -1.1
227,840 - BACOVA_04340 0.39 -0.9
227,840 - BACOVA_04340 0.39 +0.3
227,851 + BACOVA_04340 0.40 -0.4
227,852 - BACOVA_04340 0.40 -0.7
227,883 - BACOVA_04340 0.41 -0.5
227,883 - BACOVA_04340 0.41 -1.2
227,900 + BACOVA_04340 0.42 -1.3
227,945 + BACOVA_04340 0.45 -1.8
227,945 - BACOVA_04340 0.45 -3.4
227,966 + BACOVA_04340 0.46 +0.6
227,967 - BACOVA_04340 0.46 -0.3
227,970 + BACOVA_04340 0.46 -0.7
227,970 + BACOVA_04340 0.46 +1.0
227,971 - BACOVA_04340 0.46 -1.0
228,008 - BACOVA_04340 0.48 -0.5
228,025 + BACOVA_04340 0.49 -1.0
228,025 + BACOVA_04340 0.49 -0.1
228,052 + BACOVA_04340 0.50 -0.1
228,055 - BACOVA_04340 0.51 -0.2
228,096 + BACOVA_04340 0.53 -0.0
228,097 - BACOVA_04340 0.53 -0.3
228,116 + BACOVA_04340 0.54 -0.0
228,162 - BACOVA_04340 0.56 +0.1
228,162 - BACOVA_04340 0.56 -1.3
228,167 + BACOVA_04340 0.57 +0.0
228,182 + BACOVA_04340 0.57 -1.3
228,399 + BACOVA_04340 0.69 +0.9
228,399 + BACOVA_04340 0.69 -0.7
228,400 - BACOVA_04340 0.69 +0.2
228,496 + BACOVA_04340 0.74 -1.7
228,496 + BACOVA_04340 0.74 -1.2
228,630 - BACOVA_04340 0.82 -0.3
228,630 - BACOVA_04340 0.82 +0.5
228,638 + BACOVA_04340 0.82 -2.0
228,641 + BACOVA_04340 0.82 +0.1
228,856 - +0.0
228,879 - +0.9
228,935 - -0.1
228,994 + +0.3
228,995 - -0.2
229,076 - +0.1
229,086 - +0.7
229,124 - +0.0
229,145 + -2.4
229,153 - -0.3
229,201 - BACOVA_04341 0.12 -0.3
229,222 - BACOVA_04341 0.13 -0.5
229,222 - BACOVA_04341 0.13 -0.0
229,222 - BACOVA_04341 0.13 -0.5
229,222 - BACOVA_04341 0.13 +1.9
229,222 - BACOVA_04341 0.13 +0.7
229,226 + BACOVA_04341 0.13 -0.6
229,239 + BACOVA_04341 0.14 -0.2
229,239 + BACOVA_04341 0.14 -0.8
229,240 - BACOVA_04341 0.14 +0.1
229,240 - BACOVA_04341 0.14 -0.0
229,247 + BACOVA_04341 0.14 +1.3
229,248 - BACOVA_04341 0.14 -0.0
229,251 - BACOVA_04341 0.15 -0.7
229,313 - BACOVA_04341 0.18 +1.1
229,356 + BACOVA_04341 0.20 -0.1
229,357 - BACOVA_04341 0.20 +0.3
229,375 - BACOVA_04341 0.21 -0.7
229,431 - BACOVA_04341 0.24 -1.1
229,433 + BACOVA_04341 0.24 +0.8
229,433 + BACOVA_04341 0.24 -0.1
229,443 - BACOVA_04341 0.24 -0.4
229,446 - BACOVA_04341 0.25 -0.2
229,455 + BACOVA_04341 0.25 -0.1
229,470 - BACOVA_04341 0.26 -0.3
229,476 + BACOVA_04341 0.26 -0.5
229,477 - BACOVA_04341 0.26 +0.0
229,477 - BACOVA_04341 0.26 +0.3
229,507 + BACOVA_04341 0.28 -2.3
229,507 + BACOVA_04341 0.28 +0.2
229,565 + BACOVA_04341 0.31 -0.6
229,585 + BACOVA_04341 0.32 -0.5
229,585 + BACOVA_04341 0.32 -1.5
229,585 + BACOVA_04341 0.32 -1.6
229,586 - BACOVA_04341 0.32 +0.4
229,662 - BACOVA_04341 0.36 -0.1
229,708 + BACOVA_04341 0.38 +0.0
229,709 - BACOVA_04341 0.38 +0.2
229,709 - BACOVA_04341 0.38 -0.4
229,710 + BACOVA_04341 0.38 -1.1
229,710 + BACOVA_04341 0.38 -1.7
229,738 - BACOVA_04341 0.39 -0.0
229,741 - BACOVA_04341 0.40 +0.1
229,741 - BACOVA_04341 0.40 -0.7
229,773 + BACOVA_04341 0.41 -0.1
229,774 - BACOVA_04341 0.41 +0.7
229,819 - BACOVA_04341 0.44 -1.2
229,828 - BACOVA_04341 0.44 -0.4
229,828 - BACOVA_04341 0.44 +0.6
229,829 + BACOVA_04341 0.44 -0.9
229,830 - BACOVA_04341 0.44 -0.1
229,840 - BACOVA_04341 0.45 -0.2
229,860 + BACOVA_04341 0.46 +0.1
229,948 - BACOVA_04341 0.50 +1.3

Or see this region's nucleotide sequence