Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04045 and BACOVA_04046 are separated by 69 nucleotides BACOVA_04046 and BACOVA_04048 are separated by 17 nucleotides BACOVA_04048 and BACOVA_04047 overlap by 25 nucleotides
BACOVA_04045: BACOVA_04045 - TonB-dependent receptor, at 376,850 to 379,072
_04045
BACOVA_04046: BACOVA_04046 - heavy metal-associated domain protein, at 379,142 to 379,465
_04046
BACOVA_04048: BACOVA_04048 - hypothetical protein, at 379,483 to 379,587
_04048
BACOVA_04047: BACOVA_04047 - copper-exporting ATPase, at 379,563 to 381,773
_04047
Position (kb) 379
380 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 378.495 kb on - strand, within BACOVA_04045 at 378.496 kb on + strand, within BACOVA_04045 at 378.711 kb on - strand, within BACOVA_04045 at 378.810 kb on - strand, within BACOVA_04045 at 378.927 kb on + strand at 379.064 kb on - strand at 379.071 kb on - strand at 379.108 kb on - strand at 379.111 kb on - strand at 379.191 kb on + strand, within BACOVA_04046 at 379.228 kb on - strand, within BACOVA_04046 at 379.232 kb on - strand, within BACOVA_04046 at 379.282 kb on + strand, within BACOVA_04046 at 379.310 kb on - strand, within BACOVA_04046 at 379.350 kb on - strand, within BACOVA_04046 at 379.371 kb on + strand, within BACOVA_04046 at 379.372 kb on - strand, within BACOVA_04046 at 379.372 kb on - strand, within BACOVA_04046 at 379.396 kb on + strand, within BACOVA_04046 at 379.476 kb on - strand at 379.555 kb on - strand, within BACOVA_04048 at 379.556 kb on + strand, within BACOVA_04048 at 379.556 kb on + strand, within BACOVA_04048 at 379.560 kb on + strand, within BACOVA_04048 at 379.561 kb on - strand, within BACOVA_04048 at 379.563 kb on - strand at 379.563 kb on - strand at 379.598 kb on + strand at 379.598 kb on + strand at 379.600 kb on + strand at 379.601 kb on + strand at 379.676 kb on + strand at 379.691 kb on + strand at 379.691 kb on + strand at 379.692 kb on - strand at 379.765 kb on - strand at 379.765 kb on - strand at 379.820 kb on + strand, within BACOVA_04047 at 379.821 kb on - strand, within BACOVA_04047 at 379.827 kb on + strand, within BACOVA_04047 at 379.828 kb on - strand, within BACOVA_04047 at 379.870 kb on + strand, within BACOVA_04047 at 379.873 kb on + strand, within BACOVA_04047 at 379.885 kb on + strand, within BACOVA_04047 at 379.886 kb on - strand, within BACOVA_04047 at 379.914 kb on + strand, within BACOVA_04047 at 379.920 kb on - strand, within BACOVA_04047 at 379.936 kb on + strand, within BACOVA_04047 at 380.000 kb on + strand, within BACOVA_04047 at 380.006 kb on - strand, within BACOVA_04047 at 380.006 kb on - strand, within BACOVA_04047 at 380.018 kb on + strand, within BACOVA_04047 at 380.024 kb on + strand, within BACOVA_04047 at 380.039 kb on + strand, within BACOVA_04047 at 380.040 kb on - strand, within BACOVA_04047 at 380.042 kb on + strand, within BACOVA_04047 at 380.042 kb on + strand, within BACOVA_04047 at 380.128 kb on - strand, within BACOVA_04047 at 380.148 kb on - strand, within BACOVA_04047 at 380.148 kb on - strand, within BACOVA_04047 at 380.217 kb on - strand, within BACOVA_04047 at 380.336 kb on - strand, within BACOVA_04047 at 380.370 kb on + strand, within BACOVA_04047 at 380.371 kb on - strand, within BACOVA_04047 at 380.430 kb on - strand, within BACOVA_04047 at 380.516 kb on + strand, within BACOVA_04047 at 380.577 kb on - strand, within BACOVA_04047
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C) remove 378,495 - BACOVA_04045 0.74 -1.7 378,496 + BACOVA_04045 0.74 -0.1 378,711 - BACOVA_04045 0.84 +0.1 378,810 - BACOVA_04045 0.88 -0.6 378,927 + +0.2 379,064 - -1.3 379,071 - -0.2 379,108 - -0.1 379,111 - -0.4 379,191 + BACOVA_04046 0.15 -0.5 379,228 - BACOVA_04046 0.27 +0.7 379,232 - BACOVA_04046 0.28 -1.5 379,282 + BACOVA_04046 0.43 +0.6 379,310 - BACOVA_04046 0.52 +1.2 379,350 - BACOVA_04046 0.64 +0.2 379,371 + BACOVA_04046 0.71 -1.0 379,372 - BACOVA_04046 0.71 -1.0 379,372 - BACOVA_04046 0.71 -0.8 379,396 + BACOVA_04046 0.78 -0.8 379,476 - -0.2 379,555 - BACOVA_04048 0.69 +0.8 379,556 + BACOVA_04048 0.70 +0.1 379,556 + BACOVA_04048 0.70 -1.0 379,560 + BACOVA_04048 0.73 -3.5 379,561 - BACOVA_04048 0.74 -0.7 379,563 - -0.7 379,563 - +1.4 379,598 + -2.0 379,598 + +1.4 379,600 + -0.6 379,601 + +0.5 379,676 + -2.0 379,691 + +0.7 379,691 + -0.1 379,692 - -0.5 379,765 - +1.1 379,765 - -0.2 379,820 + BACOVA_04047 0.12 -2.0 379,821 - BACOVA_04047 0.12 +0.7 379,827 + BACOVA_04047 0.12 +0.3 379,828 - BACOVA_04047 0.12 +0.9 379,870 + BACOVA_04047 0.14 -0.2 379,873 + BACOVA_04047 0.14 -2.1 379,885 + BACOVA_04047 0.15 +1.8 379,886 - BACOVA_04047 0.15 -0.5 379,914 + BACOVA_04047 0.16 +0.5 379,920 - BACOVA_04047 0.16 +1.1 379,936 + BACOVA_04047 0.17 -0.7 380,000 + BACOVA_04047 0.20 +0.5 380,006 - BACOVA_04047 0.20 -1.8 380,006 - BACOVA_04047 0.20 +0.2 380,018 + BACOVA_04047 0.21 +0.1 380,024 + BACOVA_04047 0.21 +0.8 380,039 + BACOVA_04047 0.22 +1.4 380,040 - BACOVA_04047 0.22 +1.0 380,042 + BACOVA_04047 0.22 -0.3 380,042 + BACOVA_04047 0.22 +0.5 380,128 - BACOVA_04047 0.26 +0.6 380,148 - BACOVA_04047 0.26 -0.3 380,148 - BACOVA_04047 0.26 +0.4 380,217 - BACOVA_04047 0.30 +0.3 380,336 - BACOVA_04047 0.35 +0.2 380,370 + BACOVA_04047 0.36 -0.0 380,371 - BACOVA_04047 0.37 +0.2 380,430 - BACOVA_04047 0.39 -0.1 380,516 + BACOVA_04047 0.43 -1.2 380,577 - BACOVA_04047 0.46 -0.5
Or see this region's nucleotide sequence