Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03999 and BACOVA_04001 are separated by 74 nucleotides BACOVA_04001 and BACOVA_04000 overlap by 249 nucleotides BACOVA_04000 and BACOVA_04002 are separated by 253 nucleotides BACOVA_04002 and BACOVA_04003 overlap by 13 nucleotides BACOVA_04003 and BACOVA_04004 overlap by 29 nucleotides
BACOVA_03999: BACOVA_03999 - hypothetical protein, at 333,918 to 335,030
_03999
BACOVA_04001: BACOVA_04001 - hypothetical protein, at 335,105 to 335,443
_04001
BACOVA_04000: BACOVA_04000 - hypothetical protein, at 335,195 to 335,332
_04000
BACOVA_04002: BACOVA_04002 - hypothetical protein, at 335,586 to 336,563
_04002
BACOVA_04003: BACOVA_04003 - hypothetical protein, at 336,551 to 336,706
_04003
BACOVA_04004: BACOVA_04004 - hypothetical protein, at 336,678 to 338,516
_04004
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 334.592 kb on + strand, within BACOVA_03999 at 334.688 kb on - strand, within BACOVA_03999 at 334.803 kb on - strand, within BACOVA_03999 at 334.855 kb on - strand, within BACOVA_03999 at 334.859 kb on + strand, within BACOVA_03999 at 334.864 kb on + strand, within BACOVA_03999 at 334.929 kb on - strand at 334.944 kb on - strand at 334.953 kb on + strand at 335.053 kb on - strand at 335.078 kb on + strand at 335.151 kb on - strand, within BACOVA_04001 at 335.183 kb on - strand, within BACOVA_04001 at 335.184 kb on + strand, within BACOVA_04001 at 335.184 kb on + strand, within BACOVA_04001 at 335.185 kb on - strand, within BACOVA_04001 at 335.185 kb on - strand, within BACOVA_04001 at 335.185 kb on - strand, within BACOVA_04001 at 335.209 kb on - strand at 335.209 kb on - strand at 335.235 kb on - strand at 335.257 kb on - strand at 335.275 kb on - strand at 335.283 kb on + strand at 335.303 kb on + strand at 335.324 kb on + strand at 335.324 kb on + strand at 335.398 kb on + strand at 335.409 kb on - strand at 335.460 kb on - strand at 335.465 kb on + strand at 335.576 kb on + strand at 335.583 kb on + strand at 335.646 kb on - strand at 335.646 kb on - strand at 335.734 kb on - strand, within BACOVA_04002 at 335.984 kb on + strand, within BACOVA_04002 at 336.047 kb on + strand, within BACOVA_04002 at 336.075 kb on - strand, within BACOVA_04002 at 336.077 kb on + strand, within BACOVA_04002 at 336.077 kb on + strand, within BACOVA_04002 at 336.083 kb on + strand, within BACOVA_04002 at 336.086 kb on + strand, within BACOVA_04002 at 336.088 kb on + strand, within BACOVA_04002 at 336.088 kb on + strand, within BACOVA_04002 at 336.201 kb on + strand, within BACOVA_04002 at 336.202 kb on - strand, within BACOVA_04002 at 336.203 kb on + strand, within BACOVA_04002 at 336.203 kb on + strand, within BACOVA_04002 at 336.488 kb on + strand at 336.489 kb on - strand at 336.561 kb on + strand at 336.562 kb on - strand at 336.617 kb on - strand, within BACOVA_04003 at 336.741 kb on + strand at 336.741 kb on + strand at 336.742 kb on - strand at 336.742 kb on - strand at 336.818 kb on + strand at 336.835 kb on + strand at 336.892 kb on - strand, within BACOVA_04004 at 337.069 kb on + strand, within BACOVA_04004 at 337.070 kb on - strand, within BACOVA_04004 at 337.070 kb on - strand, within BACOVA_04004 at 337.147 kb on - strand, within BACOVA_04004 at 337.147 kb on - strand, within BACOVA_04004 at 337.234 kb on - strand, within BACOVA_04004 at 337.234 kb on - strand, within BACOVA_04004 at 337.503 kb on + strand, within BACOVA_04004 at 337.503 kb on + strand, within BACOVA_04004 at 337.518 kb on - strand, within BACOVA_04004
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C) remove 334,592 + BACOVA_03999 0.61 -0.8 334,688 - BACOVA_03999 0.69 +0.9 334,803 - BACOVA_03999 0.80 +0.0 334,855 - BACOVA_03999 0.84 -0.1 334,859 + BACOVA_03999 0.85 +0.1 334,864 + BACOVA_03999 0.85 +0.0 334,929 - +1.5 334,944 - -0.0 334,953 + -0.1 335,053 - -1.5 335,078 + -1.2 335,151 - BACOVA_04001 0.14 -0.2 335,183 - BACOVA_04001 0.23 +2.2 335,184 + BACOVA_04001 0.23 -0.4 335,184 + BACOVA_04001 0.23 +0.7 335,185 - BACOVA_04001 0.24 +1.4 335,185 - BACOVA_04001 0.24 +2.8 335,185 - BACOVA_04001 0.24 +0.7 335,209 - -1.8 335,209 - -0.1 335,235 - +0.7 335,257 - -1.4 335,275 - +0.1 335,283 + +0.2 335,303 + -0.6 335,324 + -0.1 335,324 + -1.7 335,398 + +0.2 335,409 - +0.8 335,460 - +0.5 335,465 + -0.3 335,576 + +0.4 335,583 + -0.5 335,646 - -0.5 335,646 - -0.6 335,734 - BACOVA_04002 0.15 +0.1 335,984 + BACOVA_04002 0.41 +0.9 336,047 + BACOVA_04002 0.47 -1.5 336,075 - BACOVA_04002 0.50 +0.2 336,077 + BACOVA_04002 0.50 +0.4 336,077 + BACOVA_04002 0.50 +0.8 336,083 + BACOVA_04002 0.51 -0.3 336,086 + BACOVA_04002 0.51 +0.5 336,088 + BACOVA_04002 0.51 +1.1 336,088 + BACOVA_04002 0.51 +0.2 336,201 + BACOVA_04002 0.63 -0.7 336,202 - BACOVA_04002 0.63 -0.7 336,203 + BACOVA_04002 0.63 +0.3 336,203 + BACOVA_04002 0.63 -0.0 336,488 + +0.1 336,489 - +0.3 336,561 + +0.1 336,562 - +0.4 336,617 - BACOVA_04003 0.42 -1.4 336,741 + -0.2 336,741 + -0.9 336,742 - +0.0 336,742 - -0.8 336,818 + +0.2 336,835 + +0.8 336,892 - BACOVA_04004 0.12 -0.1 337,069 + BACOVA_04004 0.21 +0.2 337,070 - BACOVA_04004 0.21 -0.0 337,070 - BACOVA_04004 0.21 -1.5 337,147 - BACOVA_04004 0.26 -0.2 337,147 - BACOVA_04004 0.26 -0.3 337,234 - BACOVA_04004 0.30 -0.8 337,234 - BACOVA_04004 0.30 +1.8 337,503 + BACOVA_04004 0.45 -1.9 337,503 + BACOVA_04004 0.45 +0.3 337,518 - BACOVA_04004 0.46 +0.6
Or see this region's nucleotide sequence