Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02587 and BACOVA_02588 are separated by 81 nucleotides BACOVA_02588 and BACOVA_02589 are separated by 220 nucleotides
BACOVA_02587: BACOVA_02587 - efflux ABC transporter, permease protein, at 355,383 to 357,704
_02587
BACOVA_02588: BACOVA_02588 - putative 8-amino-7-oxononanoate synthase, at 357,786 to 358,970
_02588
BACOVA_02589: BACOVA_02589 - lipid kinase, YegS/Rv2252/BmrU family, at 359,191 to 360,216
_02589
Position (kb) 357
358
359 Strain fitness (log2 ratio) -2
-1
0
1 at 356.820 kb on - strand, within BACOVA_02587 at 356.890 kb on - strand, within BACOVA_02587 at 356.892 kb on - strand, within BACOVA_02587 at 356.926 kb on - strand, within BACOVA_02587 at 356.991 kb on - strand, within BACOVA_02587 at 357.001 kb on + strand, within BACOVA_02587 at 357.002 kb on - strand, within BACOVA_02587 at 357.002 kb on - strand, within BACOVA_02587 at 357.064 kb on + strand, within BACOVA_02587 at 357.075 kb on + strand, within BACOVA_02587 at 357.076 kb on - strand, within BACOVA_02587 at 357.078 kb on - strand, within BACOVA_02587 at 357.080 kb on - strand, within BACOVA_02587 at 357.108 kb on + strand, within BACOVA_02587 at 357.141 kb on - strand, within BACOVA_02587 at 357.177 kb on - strand, within BACOVA_02587 at 357.177 kb on - strand, within BACOVA_02587 at 357.179 kb on + strand, within BACOVA_02587 at 357.180 kb on - strand, within BACOVA_02587 at 357.180 kb on - strand, within BACOVA_02587 at 357.243 kb on - strand, within BACOVA_02587 at 357.300 kb on + strand, within BACOVA_02587 at 357.300 kb on + strand, within BACOVA_02587 at 357.301 kb on - strand, within BACOVA_02587 at 357.303 kb on - strand, within BACOVA_02587 at 357.341 kb on - strand, within BACOVA_02587 at 357.352 kb on + strand, within BACOVA_02587 at 357.353 kb on - strand, within BACOVA_02587 at 357.356 kb on + strand, within BACOVA_02587 at 357.356 kb on + strand, within BACOVA_02587 at 357.359 kb on - strand, within BACOVA_02587 at 357.428 kb on + strand, within BACOVA_02587 at 357.430 kb on + strand, within BACOVA_02587 at 357.430 kb on + strand, within BACOVA_02587 at 357.431 kb on - strand, within BACOVA_02587 at 357.454 kb on + strand, within BACOVA_02587 at 357.454 kb on + strand, within BACOVA_02587 at 357.460 kb on + strand, within BACOVA_02587 at 357.473 kb on - strand at 357.497 kb on - strand at 357.535 kb on - strand at 357.535 kb on - strand at 357.566 kb on + strand at 357.583 kb on + strand at 357.607 kb on + strand at 357.607 kb on + strand at 357.607 kb on + strand at 357.608 kb on - strand at 357.614 kb on - strand at 357.707 kb on + strand at 357.752 kb on - strand at 357.774 kb on - strand at 357.774 kb on - strand at 357.788 kb on - strand at 357.807 kb on - strand at 357.807 kb on - strand at 358.986 kb on - strand at 359.019 kb on - strand at 359.080 kb on - strand at 359.133 kb on + strand at 359.172 kb on + strand at 359.187 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C) remove 356,820 - BACOVA_02587 0.62 +1.0 356,890 - BACOVA_02587 0.65 +0.5 356,892 - BACOVA_02587 0.65 +1.0 356,926 - BACOVA_02587 0.66 +0.1 356,991 - BACOVA_02587 0.69 -0.3 357,001 + BACOVA_02587 0.70 -1.0 357,002 - BACOVA_02587 0.70 -0.5 357,002 - BACOVA_02587 0.70 +0.7 357,064 + BACOVA_02587 0.72 -0.5 357,075 + BACOVA_02587 0.73 -0.5 357,076 - BACOVA_02587 0.73 -1.2 357,078 - BACOVA_02587 0.73 -0.3 357,080 - BACOVA_02587 0.73 +0.0 357,108 + BACOVA_02587 0.74 +0.5 357,141 - BACOVA_02587 0.76 +0.7 357,177 - BACOVA_02587 0.77 -1.2 357,177 - BACOVA_02587 0.77 -1.1 357,179 + BACOVA_02587 0.77 -1.1 357,180 - BACOVA_02587 0.77 -0.3 357,180 - BACOVA_02587 0.77 -0.9 357,243 - BACOVA_02587 0.80 -1.7 357,300 + BACOVA_02587 0.83 -0.2 357,300 + BACOVA_02587 0.83 -0.8 357,301 - BACOVA_02587 0.83 +0.5 357,303 - BACOVA_02587 0.83 -2.5 357,341 - BACOVA_02587 0.84 -0.3 357,352 + BACOVA_02587 0.85 -2.2 357,353 - BACOVA_02587 0.85 +0.1 357,356 + BACOVA_02587 0.85 +1.1 357,356 + BACOVA_02587 0.85 +1.2 357,359 - BACOVA_02587 0.85 -0.2 357,428 + BACOVA_02587 0.88 -0.8 357,430 + BACOVA_02587 0.88 +0.2 357,430 + BACOVA_02587 0.88 -1.4 357,431 - BACOVA_02587 0.88 +0.7 357,454 + BACOVA_02587 0.89 +0.7 357,454 + BACOVA_02587 0.89 -0.3 357,460 + BACOVA_02587 0.89 -1.0 357,473 - +0.2 357,497 - -0.3 357,535 - +0.6 357,535 - +0.7 357,566 + -0.7 357,583 + -0.4 357,607 + +0.4 357,607 + -0.7 357,607 + -0.4 357,608 - -1.9 357,614 - -0.2 357,707 + -0.5 357,752 - +1.2 357,774 - +0.2 357,774 - -0.2 357,788 - -0.7 357,807 - -0.8 357,807 - +0.8 358,986 - -0.3 359,019 - -1.3 359,080 - +0.4 359,133 + -1.1 359,172 + -0.1 359,187 + +0.1
Or see this region's nucleotide sequence