Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02585

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02584 and BACOVA_02585 are separated by 12 nucleotidesBACOVA_02585 and BACOVA_02586 are separated by 28 nucleotidesBACOVA_02586 and BACOVA_02587 are separated by 27 nucleotides BACOVA_02584: BACOVA_02584 - efflux ABC transporter, permease protein, at 349,865 to 352,243 _02584 BACOVA_02585: BACOVA_02585 - efflux ABC transporter, permease protein, at 352,256 to 354,652 _02585 BACOVA_02586: BACOVA_02586 - putative bacteriocin export ABC transporter, lactococcin 972 group, at 354,681 to 355,355 _02586 BACOVA_02587: BACOVA_02587 - efflux ABC transporter, permease protein, at 355,383 to 357,704 _02587 Position (kb) 352 353 354 355Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 351.350 kb on - strand, within BACOVA_02584at 351.365 kb on + strand, within BACOVA_02584at 351.371 kb on - strand, within BACOVA_02584at 351.419 kb on + strand, within BACOVA_02584at 351.420 kb on - strand, within BACOVA_02584at 351.425 kb on - strand, within BACOVA_02584at 351.546 kb on - strand, within BACOVA_02584at 351.546 kb on - strand, within BACOVA_02584at 351.547 kb on + strand, within BACOVA_02584at 351.566 kb on - strand, within BACOVA_02584at 351.630 kb on + strand, within BACOVA_02584at 351.644 kb on + strand, within BACOVA_02584at 351.656 kb on - strand, within BACOVA_02584at 351.658 kb on + strand, within BACOVA_02584at 351.658 kb on + strand, within BACOVA_02584at 351.659 kb on - strand, within BACOVA_02584at 351.659 kb on - strand, within BACOVA_02584at 351.659 kb on - strand, within BACOVA_02584at 351.702 kb on + strand, within BACOVA_02584at 351.715 kb on - strand, within BACOVA_02584at 351.715 kb on - strand, within BACOVA_02584at 351.723 kb on + strand, within BACOVA_02584at 351.723 kb on + strand, within BACOVA_02584at 351.725 kb on + strand, within BACOVA_02584at 351.761 kb on + strand, within BACOVA_02584at 351.810 kb on - strand, within BACOVA_02584at 351.890 kb on - strand, within BACOVA_02584at 351.890 kb on - strand, within BACOVA_02584at 351.891 kb on + strand, within BACOVA_02584at 351.895 kb on + strand, within BACOVA_02584at 351.901 kb on - strand, within BACOVA_02584at 352.039 kb on - strandat 352.039 kb on - strandat 352.039 kb on - strandat 352.084 kb on - strandat 352.122 kb on + strandat 352.123 kb on - strandat 352.123 kb on - strandat 352.127 kb on - strandat 352.194 kb on + strandat 352.194 kb on + strandat 352.248 kb on - strandat 352.252 kb on + strandat 352.260 kb on + strandat 352.261 kb on - strandat 352.342 kb on - strandat 352.357 kb on + strandat 352.361 kb on - strandat 352.362 kb on + strandat 352.363 kb on - strandat 352.363 kb on - strandat 352.363 kb on - strandat 352.366 kb on + strandat 352.366 kb on + strandat 352.366 kb on + strandat 352.367 kb on - strandat 352.367 kb on - strandat 352.367 kb on - strandat 352.367 kb on - strandat 352.367 kb on - strandat 352.370 kb on + strandat 352.387 kb on - strandat 352.394 kb on - strandat 352.416 kb on - strandat 352.444 kb on + strandat 352.505 kb on - strand, within BACOVA_02585at 352.541 kb on - strand, within BACOVA_02585at 352.541 kb on - strand, within BACOVA_02585at 352.547 kb on + strand, within BACOVA_02585at 352.547 kb on + strand, within BACOVA_02585at 352.633 kb on - strand, within BACOVA_02585at 352.639 kb on + strand, within BACOVA_02585at 352.640 kb on - strand, within BACOVA_02585at 352.662 kb on + strand, within BACOVA_02585at 352.706 kb on - strand, within BACOVA_02585at 352.709 kb on - strand, within BACOVA_02585at 352.711 kb on - strand, within BACOVA_02585at 352.735 kb on - strand, within BACOVA_02585at 352.793 kb on - strand, within BACOVA_02585at 352.808 kb on - strand, within BACOVA_02585at 352.954 kb on + strand, within BACOVA_02585at 352.973 kb on + strand, within BACOVA_02585at 353.038 kb on + strand, within BACOVA_02585at 353.039 kb on - strand, within BACOVA_02585at 353.039 kb on - strand, within BACOVA_02585at 353.042 kb on + strand, within BACOVA_02585at 353.049 kb on + strand, within BACOVA_02585at 353.051 kb on + strand, within BACOVA_02585at 353.063 kb on + strand, within BACOVA_02585at 353.064 kb on - strand, within BACOVA_02585at 353.083 kb on + strand, within BACOVA_02585at 353.083 kb on + strand, within BACOVA_02585at 353.086 kb on - strand, within BACOVA_02585at 353.086 kb on - strand, within BACOVA_02585at 353.086 kb on - strand, within BACOVA_02585at 353.110 kb on + strand, within BACOVA_02585at 353.116 kb on + strand, within BACOVA_02585at 353.154 kb on + strand, within BACOVA_02585at 353.174 kb on - strand, within BACOVA_02585at 353.229 kb on + strand, within BACOVA_02585at 353.278 kb on - strand, within BACOVA_02585at 353.298 kb on + strand, within BACOVA_02585at 353.337 kb on + strand, within BACOVA_02585at 353.404 kb on - strand, within BACOVA_02585at 353.503 kb on + strand, within BACOVA_02585at 353.503 kb on + strand, within BACOVA_02585at 353.507 kb on + strand, within BACOVA_02585at 353.507 kb on + strand, within BACOVA_02585at 353.508 kb on - strand, within BACOVA_02585at 353.546 kb on - strand, within BACOVA_02585at 353.546 kb on - strand, within BACOVA_02585at 353.573 kb on - strand, within BACOVA_02585at 353.647 kb on + strand, within BACOVA_02585at 353.653 kb on - strand, within BACOVA_02585at 353.665 kb on + strand, within BACOVA_02585at 353.665 kb on + strand, within BACOVA_02585at 353.782 kb on + strand, within BACOVA_02585at 353.784 kb on + strand, within BACOVA_02585at 353.784 kb on + strand, within BACOVA_02585at 353.785 kb on - strand, within BACOVA_02585at 353.785 kb on - strand, within BACOVA_02585at 353.789 kb on + strand, within BACOVA_02585at 353.789 kb on + strand, within BACOVA_02585at 353.790 kb on - strand, within BACOVA_02585at 353.790 kb on - strand, within BACOVA_02585at 353.803 kb on - strand, within BACOVA_02585at 353.817 kb on + strand, within BACOVA_02585at 353.858 kb on - strand, within BACOVA_02585at 353.858 kb on - strand, within BACOVA_02585at 353.863 kb on - strand, within BACOVA_02585at 353.863 kb on - strand, within BACOVA_02585at 353.981 kb on + strand, within BACOVA_02585at 353.984 kb on - strand, within BACOVA_02585at 353.984 kb on - strand, within BACOVA_02585at 354.060 kb on + strand, within BACOVA_02585at 354.060 kb on + strand, within BACOVA_02585at 354.061 kb on - strand, within BACOVA_02585at 354.061 kb on - strand, within BACOVA_02585at 354.061 kb on - strand, within BACOVA_02585at 354.110 kb on + strand, within BACOVA_02585at 354.114 kb on + strand, within BACOVA_02585at 354.206 kb on - strand, within BACOVA_02585at 354.219 kb on + strand, within BACOVA_02585at 354.242 kb on + strand, within BACOVA_02585at 354.242 kb on + strand, within BACOVA_02585at 354.264 kb on - strand, within BACOVA_02585at 354.266 kb on - strand, within BACOVA_02585at 354.330 kb on - strand, within BACOVA_02585at 354.402 kb on + strand, within BACOVA_02585at 354.513 kb on - strandat 354.513 kb on - strandat 354.574 kb on - strandat 354.574 kb on - strandat 354.592 kb on + strandat 354.599 kb on - strandat 354.637 kb on - strandat 354.674 kb on + strandat 354.680 kb on + strandat 354.687 kb on - strandat 354.687 kb on - strandat 354.912 kb on - strand, within BACOVA_02586at 355.008 kb on + strand, within BACOVA_02586at 355.011 kb on - strand, within BACOVA_02586at 355.017 kb on - strand, within BACOVA_02586at 355.055 kb on + strand, within BACOVA_02586at 355.055 kb on + strand, within BACOVA_02586at 355.346 kb on + strandat 355.349 kb on + strandat 355.365 kb on - strandat 355.379 kb on + strandat 355.423 kb on + strandat 355.423 kb on + strandat 355.424 kb on - strandat 355.428 kb on + strandat 355.448 kb on + strandat 355.449 kb on - strandat 355.449 kb on - strandat 355.449 kb on - strandat 355.451 kb on + strandat 355.452 kb on - strandat 355.495 kb on + strandat 355.522 kb on - strandat 355.555 kb on - strandat 355.601 kb on + strandat 355.627 kb on - strand, within BACOVA_02587

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
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351,350 - BACOVA_02584 0.62 -0.5
351,365 + BACOVA_02584 0.63 +0.0
351,371 - BACOVA_02584 0.63 +0.3
351,419 + BACOVA_02584 0.65 +0.8
351,420 - BACOVA_02584 0.65 -0.4
351,425 - BACOVA_02584 0.66 +0.2
351,546 - BACOVA_02584 0.71 -0.3
351,546 - BACOVA_02584 0.71 +0.4
351,547 + BACOVA_02584 0.71 -0.3
351,566 - BACOVA_02584 0.72 +0.3
351,630 + BACOVA_02584 0.74 -0.8
351,644 + BACOVA_02584 0.75 -1.5
351,656 - BACOVA_02584 0.75 +0.1
351,658 + BACOVA_02584 0.75 -0.4
351,658 + BACOVA_02584 0.75 +1.0
351,659 - BACOVA_02584 0.75 +0.0
351,659 - BACOVA_02584 0.75 +0.3
351,659 - BACOVA_02584 0.75 +0.8
351,702 + BACOVA_02584 0.77 +0.4
351,715 - BACOVA_02584 0.78 +0.7
351,715 - BACOVA_02584 0.78 -0.0
351,723 + BACOVA_02584 0.78 -0.8
351,723 + BACOVA_02584 0.78 +1.3
351,725 + BACOVA_02584 0.78 +1.0
351,761 + BACOVA_02584 0.80 +0.8
351,810 - BACOVA_02584 0.82 -0.8
351,890 - BACOVA_02584 0.85 +0.5
351,890 - BACOVA_02584 0.85 -0.3
351,891 + BACOVA_02584 0.85 -1.2
351,895 + BACOVA_02584 0.85 -0.6
351,901 - BACOVA_02584 0.86 -0.6
352,039 - -0.9
352,039 - -0.8
352,039 - +0.1
352,084 - -0.1
352,122 + +0.9
352,123 - +0.0
352,123 - +0.8
352,127 - -1.2
352,194 + +1.4
352,194 + -0.2
352,248 - -0.3
352,252 + +0.8
352,260 + -1.0
352,261 - -0.3
352,342 - -1.2
352,357 + +0.2
352,361 - -1.2
352,362 + +0.2
352,363 - -2.1
352,363 - -0.4
352,363 - +0.4
352,366 + +0.4
352,366 + +0.2
352,366 + -2.1
352,367 - -1.8
352,367 - -0.4
352,367 - -0.2
352,367 - +0.4
352,367 - -0.8
352,370 + -0.2
352,387 - +0.0
352,394 - -1.4
352,416 - -0.3
352,444 + +0.0
352,505 - BACOVA_02585 0.10 -0.2
352,541 - BACOVA_02585 0.12 +0.4
352,541 - BACOVA_02585 0.12 +0.0
352,547 + BACOVA_02585 0.12 +0.6
352,547 + BACOVA_02585 0.12 -1.1
352,633 - BACOVA_02585 0.16 -1.4
352,639 + BACOVA_02585 0.16 -2.3
352,640 - BACOVA_02585 0.16 +1.1
352,662 + BACOVA_02585 0.17 +2.1
352,706 - BACOVA_02585 0.19 -0.3
352,709 - BACOVA_02585 0.19 -1.3
352,711 - BACOVA_02585 0.19 -1.3
352,735 - BACOVA_02585 0.20 +0.2
352,793 - BACOVA_02585 0.22 -0.3
352,808 - BACOVA_02585 0.23 -0.9
352,954 + BACOVA_02585 0.29 +1.4
352,973 + BACOVA_02585 0.30 -0.8
353,038 + BACOVA_02585 0.33 +0.0
353,039 - BACOVA_02585 0.33 +1.2
353,039 - BACOVA_02585 0.33 -0.8
353,042 + BACOVA_02585 0.33 +2.1
353,049 + BACOVA_02585 0.33 +0.9
353,051 + BACOVA_02585 0.33 -1.2
353,063 + BACOVA_02585 0.34 -0.3
353,064 - BACOVA_02585 0.34 +1.0
353,083 + BACOVA_02585 0.35 -0.2
353,083 + BACOVA_02585 0.35 +0.8
353,086 - BACOVA_02585 0.35 +1.0
353,086 - BACOVA_02585 0.35 +0.8
353,086 - BACOVA_02585 0.35 -1.4
353,110 + BACOVA_02585 0.36 -1.0
353,116 + BACOVA_02585 0.36 -0.2
353,154 + BACOVA_02585 0.37 -0.8
353,174 - BACOVA_02585 0.38 +0.2
353,229 + BACOVA_02585 0.41 -1.8
353,278 - BACOVA_02585 0.43 -0.3
353,298 + BACOVA_02585 0.43 +0.2
353,337 + BACOVA_02585 0.45 -1.3
353,404 - BACOVA_02585 0.48 +0.5
353,503 + BACOVA_02585 0.52 -0.3
353,503 + BACOVA_02585 0.52 +0.6
353,507 + BACOVA_02585 0.52 -1.1
353,507 + BACOVA_02585 0.52 -1.7
353,508 - BACOVA_02585 0.52 +0.7
353,546 - BACOVA_02585 0.54 -1.8
353,546 - BACOVA_02585 0.54 +0.8
353,573 - BACOVA_02585 0.55 +0.1
353,647 + BACOVA_02585 0.58 -0.3
353,653 - BACOVA_02585 0.58 -0.4
353,665 + BACOVA_02585 0.59 +0.1
353,665 + BACOVA_02585 0.59 +0.7
353,782 + BACOVA_02585 0.64 +0.0
353,784 + BACOVA_02585 0.64 -1.0
353,784 + BACOVA_02585 0.64 +0.4
353,785 - BACOVA_02585 0.64 -0.3
353,785 - BACOVA_02585 0.64 -0.4
353,789 + BACOVA_02585 0.64 +0.4
353,789 + BACOVA_02585 0.64 -2.5
353,790 - BACOVA_02585 0.64 -1.2
353,790 - BACOVA_02585 0.64 -1.7
353,803 - BACOVA_02585 0.65 +0.5
353,817 + BACOVA_02585 0.65 +0.8
353,858 - BACOVA_02585 0.67 -0.2
353,858 - BACOVA_02585 0.67 -1.2
353,863 - BACOVA_02585 0.67 -0.1
353,863 - BACOVA_02585 0.67 +0.3
353,981 + BACOVA_02585 0.72 +0.1
353,984 - BACOVA_02585 0.72 +0.4
353,984 - BACOVA_02585 0.72 -1.6
354,060 + BACOVA_02585 0.75 +0.2
354,060 + BACOVA_02585 0.75 -3.2
354,061 - BACOVA_02585 0.75 -1.3
354,061 - BACOVA_02585 0.75 -0.6
354,061 - BACOVA_02585 0.75 +0.6
354,110 + BACOVA_02585 0.77 +0.0
354,114 + BACOVA_02585 0.78 -1.0
354,206 - BACOVA_02585 0.81 -0.3
354,219 + BACOVA_02585 0.82 +1.5
354,242 + BACOVA_02585 0.83 -1.0
354,242 + BACOVA_02585 0.83 -1.4
354,264 - BACOVA_02585 0.84 +0.5
354,266 - BACOVA_02585 0.84 +0.7
354,330 - BACOVA_02585 0.87 +0.2
354,402 + BACOVA_02585 0.90 +0.7
354,513 - +1.8
354,513 - -0.8
354,574 - -1.0
354,574 - -1.2
354,592 + +1.8
354,599 - +0.2
354,637 - +0.8
354,674 + -1.2
354,680 + +0.2
354,687 - -0.5
354,687 - +0.3
354,912 - BACOVA_02586 0.34 +0.7
355,008 + BACOVA_02586 0.48 +0.0
355,011 - BACOVA_02586 0.49 +2.0
355,017 - BACOVA_02586 0.50 +1.0
355,055 + BACOVA_02586 0.55 +1.1
355,055 + BACOVA_02586 0.55 +0.7
355,346 + -2.2
355,349 + -1.0
355,365 - +0.9
355,379 + -1.0
355,423 + -1.5
355,423 + +0.2
355,424 - -0.3
355,428 + -1.2
355,448 + +1.4
355,449 - +1.3
355,449 - +0.7
355,449 - -1.4
355,451 + -0.4
355,452 - +0.3
355,495 + +1.0
355,522 - -0.3
355,555 - +1.3
355,601 + -0.5
355,627 - BACOVA_02587 0.11 +0.8

Or see this region's nucleotide sequence