Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02576 and BACOVA_02577 are separated by 143 nucleotides BACOVA_02577 and BACOVA_02578 are separated by 162 nucleotides BACOVA_02578 and BACOVA_02579 are separated by 120 nucleotides BACOVA_02579 and BACOVA_02580 are separated by 63 nucleotides BACOVA_02580 and BACOVA_02581 overlap by 4 nucleotides
BACOVA_02576: BACOVA_02576 - tRNA-Pro, at 343,138 to 343,212
_02576
BACOVA_02577: BACOVA_02577 - hypothetical protein, at 343,356 to 343,523
_02577
BACOVA_02578: BACOVA_02578 - hypothetical protein, at 343,686 to 343,814
_02578
BACOVA_02579: BACOVA_02579 - hypothetical protein, at 343,935 to 344,141
_02579
BACOVA_02580: BACOVA_02580 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 344,205 to 345,476
_02580
BACOVA_02581: BACOVA_02581 - Sigma-54 interaction domain protein, at 345,473 to 346,879
_02581
Position (kb) 344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 343.439 kb on + strand, within BACOVA_02577 at 343.656 kb on + strand at 343.657 kb on - strand at 343.657 kb on - strand at 343.784 kb on + strand, within BACOVA_02578 at 343.784 kb on + strand, within BACOVA_02578 at 343.789 kb on + strand, within BACOVA_02578 at 343.804 kb on - strand at 343.815 kb on - strand at 343.841 kb on - strand at 343.847 kb on - strand at 343.872 kb on + strand at 343.894 kb on + strand at 343.895 kb on - strand at 344.072 kb on + strand, within BACOVA_02579 at 344.073 kb on - strand, within BACOVA_02579 at 344.115 kb on - strand, within BACOVA_02579 at 344.129 kb on + strand at 344.130 kb on - strand at 344.132 kb on + strand at 344.139 kb on + strand at 344.140 kb on - strand at 344.153 kb on - strand at 344.164 kb on + strand at 344.264 kb on + strand at 344.264 kb on + strand at 344.265 kb on - strand at 344.374 kb on - strand, within BACOVA_02580 at 344.397 kb on + strand, within BACOVA_02580 at 344.397 kb on + strand, within BACOVA_02580 at 344.397 kb on + strand, within BACOVA_02580 at 344.398 kb on - strand, within BACOVA_02580 at 344.448 kb on - strand, within BACOVA_02580 at 344.508 kb on + strand, within BACOVA_02580 at 344.523 kb on + strand, within BACOVA_02580 at 344.527 kb on + strand, within BACOVA_02580 at 344.527 kb on + strand, within BACOVA_02580 at 344.530 kb on - strand, within BACOVA_02580 at 344.564 kb on + strand, within BACOVA_02580 at 344.616 kb on + strand, within BACOVA_02580 at 344.622 kb on - strand, within BACOVA_02580 at 344.724 kb on - strand, within BACOVA_02580 at 344.731 kb on + strand, within BACOVA_02580 at 344.731 kb on + strand, within BACOVA_02580 at 344.732 kb on - strand, within BACOVA_02580 at 344.792 kb on + strand, within BACOVA_02580 at 344.792 kb on + strand, within BACOVA_02580 at 344.829 kb on + strand, within BACOVA_02580 at 344.925 kb on - strand, within BACOVA_02580 at 344.993 kb on + strand, within BACOVA_02580 at 344.993 kb on + strand, within BACOVA_02580 at 344.993 kb on + strand, within BACOVA_02580 at 344.994 kb on - strand, within BACOVA_02580 at 344.994 kb on - strand, within BACOVA_02580 at 344.994 kb on - strand, within BACOVA_02580 at 345.039 kb on + strand, within BACOVA_02580 at 345.116 kb on + strand, within BACOVA_02580 at 345.117 kb on - strand, within BACOVA_02580 at 345.117 kb on - strand, within BACOVA_02580 at 345.120 kb on + strand, within BACOVA_02580 at 345.121 kb on - strand, within BACOVA_02580 at 345.121 kb on - strand, within BACOVA_02580 at 345.126 kb on - strand, within BACOVA_02580 at 345.266 kb on + strand, within BACOVA_02580 at 345.301 kb on - strand, within BACOVA_02580 at 345.324 kb on + strand, within BACOVA_02580 at 345.351 kb on + strand at 345.365 kb on + strand at 345.388 kb on - strand at 345.388 kb on - strand at 345.453 kb on + strand at 345.477 kb on - strand at 345.483 kb on - strand at 345.502 kb on - strand at 345.695 kb on + strand, within BACOVA_02581 at 345.695 kb on + strand, within BACOVA_02581 at 345.712 kb on + strand, within BACOVA_02581 at 345.713 kb on - strand, within BACOVA_02581 at 345.713 kb on - strand, within BACOVA_02581 at 345.747 kb on + strand, within BACOVA_02581 at 345.801 kb on + strand, within BACOVA_02581 at 345.875 kb on + strand, within BACOVA_02581 at 345.876 kb on - strand, within BACOVA_02581 at 345.876 kb on - strand, within BACOVA_02581 at 345.877 kb on + strand, within BACOVA_02581 at 345.877 kb on + strand, within BACOVA_02581 at 345.877 kb on + strand, within BACOVA_02581 at 345.878 kb on - strand, within BACOVA_02581 at 345.882 kb on - strand, within BACOVA_02581 at 345.905 kb on + strand, within BACOVA_02581 at 345.906 kb on - strand, within BACOVA_02581 at 345.908 kb on + strand, within BACOVA_02581 at 345.909 kb on - strand, within BACOVA_02581 at 345.968 kb on + strand, within BACOVA_02581 at 346.202 kb on - strand, within BACOVA_02581 at 346.236 kb on + strand, within BACOVA_02581 at 346.256 kb on + strand, within BACOVA_02581 at 346.260 kb on - strand, within BACOVA_02581 at 346.260 kb on - strand, within BACOVA_02581 at 346.322 kb on - strand, within BACOVA_02581 at 346.325 kb on - strand, within BACOVA_02581 at 346.337 kb on + strand, within BACOVA_02581 at 346.379 kb on - strand, within BACOVA_02581 at 346.379 kb on - strand, within BACOVA_02581 at 346.419 kb on - strand, within BACOVA_02581
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C) remove 343,439 + BACOVA_02577 0.49 -0.8 343,656 + -0.8 343,657 - -1.0 343,657 - -2.1 343,784 + BACOVA_02578 0.76 +0.0 343,784 + BACOVA_02578 0.76 -2.8 343,789 + BACOVA_02578 0.80 +0.3 343,804 - -0.1 343,815 - -0.1 343,841 - +0.0 343,847 - +0.5 343,872 + -1.6 343,894 + -0.3 343,895 - +1.2 344,072 + BACOVA_02579 0.66 -0.3 344,073 - BACOVA_02579 0.67 -1.2 344,115 - BACOVA_02579 0.87 -1.0 344,129 + +0.9 344,130 - +0.3 344,132 + -2.0 344,139 + -0.1 344,140 - +1.0 344,153 - -1.2 344,164 + -1.2 344,264 + +0.5 344,264 + +1.1 344,265 - -0.6 344,374 - BACOVA_02580 0.13 +0.2 344,397 + BACOVA_02580 0.15 -0.3 344,397 + BACOVA_02580 0.15 +1.0 344,397 + BACOVA_02580 0.15 -0.2 344,398 - BACOVA_02580 0.15 -0.3 344,448 - BACOVA_02580 0.19 -1.1 344,508 + BACOVA_02580 0.24 -0.4 344,523 + BACOVA_02580 0.25 -2.1 344,527 + BACOVA_02580 0.25 -0.0 344,527 + BACOVA_02580 0.25 -0.0 344,530 - BACOVA_02580 0.26 +1.2 344,564 + BACOVA_02580 0.28 +0.2 344,616 + BACOVA_02580 0.32 -2.2 344,622 - BACOVA_02580 0.33 -0.4 344,724 - BACOVA_02580 0.41 +0.1 344,731 + BACOVA_02580 0.41 -0.5 344,731 + BACOVA_02580 0.41 -0.3 344,732 - BACOVA_02580 0.41 +1.2 344,792 + BACOVA_02580 0.46 +1.1 344,792 + BACOVA_02580 0.46 -0.8 344,829 + BACOVA_02580 0.49 -1.0 344,925 - BACOVA_02580 0.57 -0.3 344,993 + BACOVA_02580 0.62 +0.6 344,993 + BACOVA_02580 0.62 +0.7 344,993 + BACOVA_02580 0.62 +1.1 344,994 - BACOVA_02580 0.62 +0.5 344,994 - BACOVA_02580 0.62 -0.9 344,994 - BACOVA_02580 0.62 -0.2 345,039 + BACOVA_02580 0.66 +0.1 345,116 + BACOVA_02580 0.72 -2.0 345,117 - BACOVA_02580 0.72 -0.4 345,117 - BACOVA_02580 0.72 -2.1 345,120 + BACOVA_02580 0.72 -1.5 345,121 - BACOVA_02580 0.72 +0.5 345,121 - BACOVA_02580 0.72 -0.0 345,126 - BACOVA_02580 0.72 +0.1 345,266 + BACOVA_02580 0.83 +0.1 345,301 - BACOVA_02580 0.86 -1.2 345,324 + BACOVA_02580 0.88 +0.0 345,351 + +0.3 345,365 + -2.0 345,388 - -0.3 345,388 - -0.6 345,453 + -1.7 345,477 - +0.7 345,483 - -0.2 345,502 - -0.9 345,695 + BACOVA_02581 0.16 -1.4 345,695 + BACOVA_02581 0.16 -0.3 345,712 + BACOVA_02581 0.17 -2.1 345,713 - BACOVA_02581 0.17 -0.2 345,713 - BACOVA_02581 0.17 -2.0 345,747 + BACOVA_02581 0.19 +0.2 345,801 + BACOVA_02581 0.23 -0.2 345,875 + BACOVA_02581 0.29 -0.4 345,876 - BACOVA_02581 0.29 +0.4 345,876 - BACOVA_02581 0.29 -0.1 345,877 + BACOVA_02581 0.29 +0.2 345,877 + BACOVA_02581 0.29 -0.6 345,877 + BACOVA_02581 0.29 -0.2 345,878 - BACOVA_02581 0.29 +0.3 345,882 - BACOVA_02581 0.29 +0.7 345,905 + BACOVA_02581 0.31 -0.3 345,906 - BACOVA_02581 0.31 +0.3 345,908 + BACOVA_02581 0.31 -2.2 345,909 - BACOVA_02581 0.31 +0.7 345,968 + BACOVA_02581 0.35 +0.6 346,202 - BACOVA_02581 0.52 +0.6 346,236 + BACOVA_02581 0.54 -0.8 346,256 + BACOVA_02581 0.56 -0.5 346,260 - BACOVA_02581 0.56 +0.2 346,260 - BACOVA_02581 0.56 +1.5 346,322 - BACOVA_02581 0.60 +0.1 346,325 - BACOVA_02581 0.61 -1.2 346,337 + BACOVA_02581 0.61 -0.8 346,379 - BACOVA_02581 0.64 +1.0 346,379 - BACOVA_02581 0.64 +0.2 346,419 - BACOVA_02581 0.67 -1.7
Or see this region's nucleotide sequence