Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01718

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01717 and BACOVA_01718 are separated by 119 nucleotidesBACOVA_01718 and BACOVA_01719 are separated by 47 nucleotides BACOVA_01717: BACOVA_01717 - carbohydrate binding domain protein, at 142,105 to 144,087 _01717 BACOVA_01718: BACOVA_01718 - galactokinase, at 144,207 to 145,361 _01718 BACOVA_01719: BACOVA_01719 - transporter, major facilitator family protein, at 145,409 to 146,749 _01719 Position (kb) 144 145 146Strain fitness (log2 ratio) -2 -1 0 1 2at 143.251 kb on + strand, within BACOVA_01717at 143.307 kb on + strand, within BACOVA_01717at 143.308 kb on - strand, within BACOVA_01717at 143.312 kb on + strand, within BACOVA_01717at 143.315 kb on + strand, within BACOVA_01717at 143.319 kb on + strand, within BACOVA_01717at 143.458 kb on + strand, within BACOVA_01717at 143.458 kb on + strand, within BACOVA_01717at 143.459 kb on - strand, within BACOVA_01717at 143.467 kb on - strand, within BACOVA_01717at 143.494 kb on + strand, within BACOVA_01717at 143.605 kb on + strand, within BACOVA_01717at 143.605 kb on + strand, within BACOVA_01717at 143.605 kb on + strand, within BACOVA_01717at 143.606 kb on - strand, within BACOVA_01717at 143.606 kb on - strand, within BACOVA_01717at 143.686 kb on - strand, within BACOVA_01717at 143.691 kb on + strand, within BACOVA_01717at 143.695 kb on + strand, within BACOVA_01717at 143.695 kb on + strand, within BACOVA_01717at 143.696 kb on - strand, within BACOVA_01717at 143.699 kb on - strand, within BACOVA_01717at 143.702 kb on + strand, within BACOVA_01717at 143.703 kb on - strand, within BACOVA_01717at 143.853 kb on + strand, within BACOVA_01717at 143.853 kb on + strand, within BACOVA_01717at 143.913 kb on - strandat 143.967 kb on + strandat 144.069 kb on + strandat 144.089 kb on + strandat 144.096 kb on - strandat 144.099 kb on + strandat 144.099 kb on + strandat 144.107 kb on - strandat 144.109 kb on + strandat 144.117 kb on + strandat 144.248 kb on - strandat 144.327 kb on - strand, within BACOVA_01718at 144.342 kb on - strand, within BACOVA_01718at 144.342 kb on - strand, within BACOVA_01718at 144.432 kb on + strand, within BACOVA_01718at 144.432 kb on + strand, within BACOVA_01718at 144.432 kb on + strand, within BACOVA_01718at 144.432 kb on + strand, within BACOVA_01718at 144.432 kb on + strand, within BACOVA_01718at 144.479 kb on + strand, within BACOVA_01718at 144.483 kb on + strand, within BACOVA_01718at 144.484 kb on - strand, within BACOVA_01718at 144.549 kb on + strand, within BACOVA_01718at 144.550 kb on - strand, within BACOVA_01718at 144.553 kb on + strand, within BACOVA_01718at 144.553 kb on + strand, within BACOVA_01718at 144.553 kb on + strand, within BACOVA_01718at 144.566 kb on + strand, within BACOVA_01718at 144.567 kb on - strand, within BACOVA_01718at 144.568 kb on + strand, within BACOVA_01718at 144.569 kb on - strand, within BACOVA_01718at 144.603 kb on + strand, within BACOVA_01718at 144.603 kb on + strand, within BACOVA_01718at 144.603 kb on + strand, within BACOVA_01718at 144.604 kb on - strand, within BACOVA_01718at 144.608 kb on + strand, within BACOVA_01718at 144.617 kb on + strand, within BACOVA_01718at 144.698 kb on + strand, within BACOVA_01718at 144.699 kb on - strand, within BACOVA_01718at 144.699 kb on - strand, within BACOVA_01718at 144.778 kb on + strand, within BACOVA_01718at 144.778 kb on + strand, within BACOVA_01718at 144.779 kb on - strand, within BACOVA_01718at 144.854 kb on + strand, within BACOVA_01718at 144.925 kb on - strand, within BACOVA_01718at 144.996 kb on - strand, within BACOVA_01718at 144.996 kb on - strand, within BACOVA_01718at 144.996 kb on - strand, within BACOVA_01718at 145.077 kb on + strand, within BACOVA_01718at 145.088 kb on + strand, within BACOVA_01718at 145.090 kb on + strand, within BACOVA_01718at 145.091 kb on - strand, within BACOVA_01718at 145.141 kb on - strand, within BACOVA_01718at 145.145 kb on - strand, within BACOVA_01718at 145.165 kb on + strand, within BACOVA_01718at 145.165 kb on + strand, within BACOVA_01718at 145.173 kb on + strand, within BACOVA_01718at 145.174 kb on - strand, within BACOVA_01718at 145.190 kb on + strand, within BACOVA_01718at 145.190 kb on + strand, within BACOVA_01718at 145.253 kb on - strandat 145.281 kb on - strandat 145.299 kb on + strandat 145.300 kb on - strandat 145.310 kb on + strandat 145.310 kb on + strandat 145.344 kb on + strandat 145.344 kb on + strandat 145.345 kb on - strandat 145.368 kb on + strandat 145.375 kb on + strandat 145.397 kb on + strandat 145.430 kb on - strandat 145.430 kb on - strandat 145.508 kb on - strandat 145.731 kb on + strand, within BACOVA_01719at 145.888 kb on - strand, within BACOVA_01719at 145.892 kb on - strand, within BACOVA_01719at 146.353 kb on + strand, within BACOVA_01719

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
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143,251 + BACOVA_01717 0.58 +1.3
143,307 + BACOVA_01717 0.61 -0.7
143,308 - BACOVA_01717 0.61 +0.3
143,312 + BACOVA_01717 0.61 -1.3
143,315 + BACOVA_01717 0.61 +0.9
143,319 + BACOVA_01717 0.61 -1.2
143,458 + BACOVA_01717 0.68 -1.1
143,458 + BACOVA_01717 0.68 +0.2
143,459 - BACOVA_01717 0.68 +0.7
143,467 - BACOVA_01717 0.69 -1.9
143,494 + BACOVA_01717 0.70 +0.1
143,605 + BACOVA_01717 0.76 -0.9
143,605 + BACOVA_01717 0.76 -0.1
143,605 + BACOVA_01717 0.76 -0.8
143,606 - BACOVA_01717 0.76 -1.3
143,606 - BACOVA_01717 0.76 -2.1
143,686 - BACOVA_01717 0.80 -1.0
143,691 + BACOVA_01717 0.80 +0.2
143,695 + BACOVA_01717 0.80 +0.4
143,695 + BACOVA_01717 0.80 +1.3
143,696 - BACOVA_01717 0.80 +0.1
143,699 - BACOVA_01717 0.80 +0.0
143,702 + BACOVA_01717 0.81 -1.2
143,703 - BACOVA_01717 0.81 +0.0
143,853 + BACOVA_01717 0.88 -0.2
143,853 + BACOVA_01717 0.88 +0.6
143,913 - +1.0
143,967 + -2.3
144,069 + +0.4
144,089 + -0.2
144,096 - -0.5
144,099 + -0.3
144,099 + -2.2
144,107 - -0.4
144,109 + +0.2
144,117 + +1.0
144,248 - +0.0
144,327 - BACOVA_01718 0.10 +0.6
144,342 - BACOVA_01718 0.12 +0.3
144,342 - BACOVA_01718 0.12 +1.0
144,432 + BACOVA_01718 0.19 +0.3
144,432 + BACOVA_01718 0.19 +1.4
144,432 + BACOVA_01718 0.19 -0.3
144,432 + BACOVA_01718 0.19 -0.0
144,432 + BACOVA_01718 0.19 -0.0
144,479 + BACOVA_01718 0.24 +0.7
144,483 + BACOVA_01718 0.24 +0.5
144,484 - BACOVA_01718 0.24 -0.2
144,549 + BACOVA_01718 0.30 -0.2
144,550 - BACOVA_01718 0.30 -0.4
144,553 + BACOVA_01718 0.30 +0.5
144,553 + BACOVA_01718 0.30 +0.9
144,553 + BACOVA_01718 0.30 +0.3
144,566 + BACOVA_01718 0.31 +0.3
144,567 - BACOVA_01718 0.31 +0.1
144,568 + BACOVA_01718 0.31 -0.3
144,569 - BACOVA_01718 0.31 +0.3
144,603 + BACOVA_01718 0.34 -0.8
144,603 + BACOVA_01718 0.34 +0.0
144,603 + BACOVA_01718 0.34 +1.3
144,604 - BACOVA_01718 0.34 +0.0
144,608 + BACOVA_01718 0.35 -0.2
144,617 + BACOVA_01718 0.35 -0.6
144,698 + BACOVA_01718 0.43 +0.1
144,699 - BACOVA_01718 0.43 -0.1
144,699 - BACOVA_01718 0.43 -1.2
144,778 + BACOVA_01718 0.49 +0.9
144,778 + BACOVA_01718 0.49 +0.3
144,779 - BACOVA_01718 0.50 -0.0
144,854 + BACOVA_01718 0.56 -0.6
144,925 - BACOVA_01718 0.62 -0.3
144,996 - BACOVA_01718 0.68 +0.5
144,996 - BACOVA_01718 0.68 -0.9
144,996 - BACOVA_01718 0.68 +1.1
145,077 + BACOVA_01718 0.75 -0.4
145,088 + BACOVA_01718 0.76 -0.7
145,090 + BACOVA_01718 0.76 -1.1
145,091 - BACOVA_01718 0.77 -0.4
145,141 - BACOVA_01718 0.81 -1.1
145,145 - BACOVA_01718 0.81 +0.1
145,165 + BACOVA_01718 0.83 +2.6
145,165 + BACOVA_01718 0.83 +0.1
145,173 + BACOVA_01718 0.84 +0.1
145,174 - BACOVA_01718 0.84 +0.7
145,190 + BACOVA_01718 0.85 +0.8
145,190 + BACOVA_01718 0.85 +0.2
145,253 - -0.7
145,281 - +0.2
145,299 + +0.4
145,300 - +1.6
145,310 + +0.5
145,310 + +0.8
145,344 + +1.1
145,344 + +2.6
145,345 - +0.7
145,368 + +0.3
145,375 + +1.0
145,397 + +1.9
145,430 - -0.1
145,430 - +0.7
145,508 - -0.7
145,731 + BACOVA_01719 0.24 +0.3
145,888 - BACOVA_01719 0.36 -0.7
145,892 - BACOVA_01719 0.36 -0.7
146,353 + BACOVA_01719 0.70 -1.7

Or see this region's nucleotide sequence