Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00227

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00227 and BACOVA_00228 are separated by 6 nucleotides BACOVA_00227: BACOVA_00227 - glycosyl hydrolase, family 43, at 268 to 1,362 _00227 BACOVA_00228: BACOVA_00228 - glycosyl hydrolase family 2, sugar binding domain protein, at 1,369 to 3,126 _00228 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.109 kb on - strandat 0.139 kb on - strandat 0.229 kb on + strandat 0.260 kb on - strandat 0.264 kb on + strandat 0.264 kb on + strandat 0.265 kb on - strandat 0.274 kb on - strandat 0.275 kb on + strandat 0.328 kb on - strandat 0.340 kb on - strandat 0.384 kb on + strand, within BACOVA_00227at 0.415 kb on + strand, within BACOVA_00227at 0.430 kb on + strand, within BACOVA_00227at 0.431 kb on - strand, within BACOVA_00227at 0.436 kb on + strand, within BACOVA_00227at 0.437 kb on - strand, within BACOVA_00227at 0.455 kb on - strand, within BACOVA_00227at 0.517 kb on + strand, within BACOVA_00227at 0.517 kb on + strand, within BACOVA_00227at 0.580 kb on + strand, within BACOVA_00227at 0.641 kb on - strand, within BACOVA_00227at 0.646 kb on - strand, within BACOVA_00227at 0.646 kb on - strand, within BACOVA_00227at 0.670 kb on + strand, within BACOVA_00227at 0.671 kb on - strand, within BACOVA_00227at 0.679 kb on - strand, within BACOVA_00227at 0.679 kb on - strand, within BACOVA_00227at 0.724 kb on - strand, within BACOVA_00227at 0.750 kb on + strand, within BACOVA_00227at 0.759 kb on + strand, within BACOVA_00227at 0.759 kb on + strand, within BACOVA_00227at 0.759 kb on + strand, within BACOVA_00227at 0.759 kb on + strand, within BACOVA_00227at 0.855 kb on + strand, within BACOVA_00227at 0.855 kb on + strand, within BACOVA_00227at 0.856 kb on - strand, within BACOVA_00227at 0.866 kb on + strand, within BACOVA_00227at 0.885 kb on + strand, within BACOVA_00227at 0.886 kb on - strand, within BACOVA_00227at 0.917 kb on + strand, within BACOVA_00227at 0.923 kb on + strand, within BACOVA_00227at 0.973 kb on + strand, within BACOVA_00227at 0.983 kb on - strand, within BACOVA_00227at 0.983 kb on - strand, within BACOVA_00227at 1.018 kb on + strand, within BACOVA_00227at 1.018 kb on + strand, within BACOVA_00227at 1.018 kb on + strand, within BACOVA_00227at 1.092 kb on + strand, within BACOVA_00227at 1.092 kb on + strand, within BACOVA_00227at 1.108 kb on - strand, within BACOVA_00227at 1.118 kb on - strand, within BACOVA_00227at 1.142 kb on - strand, within BACOVA_00227at 1.158 kb on + strand, within BACOVA_00227at 1.158 kb on + strand, within BACOVA_00227at 1.199 kb on + strand, within BACOVA_00227at 1.199 kb on + strand, within BACOVA_00227at 1.199 kb on + strand, within BACOVA_00227at 1.200 kb on - strand, within BACOVA_00227at 1.216 kb on + strand, within BACOVA_00227at 1.220 kb on - strand, within BACOVA_00227at 1.222 kb on - strand, within BACOVA_00227at 1.236 kb on + strand, within BACOVA_00227at 1.237 kb on - strand, within BACOVA_00227at 1.244 kb on - strand, within BACOVA_00227at 1.244 kb on - strand, within BACOVA_00227at 1.244 kb on - strand, within BACOVA_00227at 1.298 kb on + strandat 1.305 kb on + strandat 1.306 kb on - strandat 1.311 kb on + strandat 1.341 kb on - strandat 1.369 kb on - strandat 1.380 kb on + strandat 1.383 kb on - strandat 1.404 kb on + strandat 1.404 kb on + strandat 1.405 kb on - strandat 1.408 kb on - strandat 1.408 kb on - strandat 1.408 kb on - strandat 1.543 kb on - strandat 1.543 kb on - strandat 1.554 kb on + strand, within BACOVA_00228at 1.629 kb on + strand, within BACOVA_00228at 1.668 kb on + strand, within BACOVA_00228at 1.675 kb on - strand, within BACOVA_00228at 1.675 kb on - strand, within BACOVA_00228at 1.678 kb on + strand, within BACOVA_00228at 1.678 kb on + strand, within BACOVA_00228at 1.679 kb on - strand, within BACOVA_00228at 1.679 kb on - strand, within BACOVA_00228at 1.694 kb on - strand, within BACOVA_00228at 1.780 kb on + strand, within BACOVA_00228at 1.781 kb on - strand, within BACOVA_00228at 1.781 kb on - strand, within BACOVA_00228at 1.781 kb on - strand, within BACOVA_00228at 1.857 kb on + strand, within BACOVA_00228at 1.862 kb on - strand, within BACOVA_00228at 1.906 kb on - strand, within BACOVA_00228at 1.996 kb on + strand, within BACOVA_00228at 2.013 kb on + strand, within BACOVA_00228at 2.014 kb on - strand, within BACOVA_00228at 2.014 kb on - strand, within BACOVA_00228at 2.057 kb on + strand, within BACOVA_00228at 2.057 kb on + strand, within BACOVA_00228at 2.069 kb on + strand, within BACOVA_00228at 2.070 kb on - strand, within BACOVA_00228at 2.070 kb on - strand, within BACOVA_00228at 2.073 kb on + strand, within BACOVA_00228at 2.073 kb on + strand, within BACOVA_00228at 2.074 kb on - strand, within BACOVA_00228at 2.074 kb on - strand, within BACOVA_00228at 2.075 kb on + strand, within BACOVA_00228at 2.083 kb on + strand, within BACOVA_00228at 2.141 kb on + strand, within BACOVA_00228at 2.215 kb on - strand, within BACOVA_00228at 2.236 kb on - strand, within BACOVA_00228at 2.262 kb on - strand, within BACOVA_00228at 2.262 kb on - strand, within BACOVA_00228at 2.344 kb on + strand, within BACOVA_00228

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/mL (C)
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109 - +0.3
139 - +0.1
229 + -0.7
260 - -0.9
264 + -0.8
264 + -0.2
265 - +1.0
274 - -0.7
275 + -0.8
328 - -0.7
340 - +0.2
384 + BACOVA_00227 0.11 -0.2
415 + BACOVA_00227 0.13 +1.4
430 + BACOVA_00227 0.15 -0.9
431 - BACOVA_00227 0.15 -1.9
436 + BACOVA_00227 0.15 -2.3
437 - BACOVA_00227 0.15 +0.3
455 - BACOVA_00227 0.17 +0.2
517 + BACOVA_00227 0.23 -1.1
517 + BACOVA_00227 0.23 +0.4
580 + BACOVA_00227 0.28 -0.3
641 - BACOVA_00227 0.34 +0.3
646 - BACOVA_00227 0.35 +0.7
646 - BACOVA_00227 0.35 -1.1
670 + BACOVA_00227 0.37 -0.4
671 - BACOVA_00227 0.37 +0.0
679 - BACOVA_00227 0.38 -0.3
679 - BACOVA_00227 0.38 -0.2
724 - BACOVA_00227 0.42 +0.1
750 + BACOVA_00227 0.44 -0.4
759 + BACOVA_00227 0.45 -0.2
759 + BACOVA_00227 0.45 -1.2
759 + BACOVA_00227 0.45 +0.4
759 + BACOVA_00227 0.45 -1.1
855 + BACOVA_00227 0.54 -0.3
855 + BACOVA_00227 0.54 +0.6
856 - BACOVA_00227 0.54 +1.3
866 + BACOVA_00227 0.55 -0.6
885 + BACOVA_00227 0.56 -0.3
886 - BACOVA_00227 0.56 +2.0
917 + BACOVA_00227 0.59 -1.2
923 + BACOVA_00227 0.60 +0.5
973 + BACOVA_00227 0.64 +0.4
983 - BACOVA_00227 0.65 +0.7
983 - BACOVA_00227 0.65 +0.1
1,018 + BACOVA_00227 0.68 +1.0
1,018 + BACOVA_00227 0.68 +1.0
1,018 + BACOVA_00227 0.68 +0.5
1,092 + BACOVA_00227 0.75 +0.4
1,092 + BACOVA_00227 0.75 -0.7
1,108 - BACOVA_00227 0.77 +0.2
1,118 - BACOVA_00227 0.78 +0.4
1,142 - BACOVA_00227 0.80 -0.2
1,158 + BACOVA_00227 0.81 -0.4
1,158 + BACOVA_00227 0.81 +0.3
1,199 + BACOVA_00227 0.85 -0.1
1,199 + BACOVA_00227 0.85 +0.6
1,199 + BACOVA_00227 0.85 -0.4
1,200 - BACOVA_00227 0.85 +2.2
1,216 + BACOVA_00227 0.87 -2.7
1,220 - BACOVA_00227 0.87 -1.1
1,222 - BACOVA_00227 0.87 -0.9
1,236 + BACOVA_00227 0.88 -0.7
1,237 - BACOVA_00227 0.88 +0.4
1,244 - BACOVA_00227 0.89 +1.0
1,244 - BACOVA_00227 0.89 -1.3
1,244 - BACOVA_00227 0.89 -0.0
1,298 + +0.9
1,305 + -1.2
1,306 - -0.2
1,311 + +0.1
1,341 - -0.4
1,369 - +0.7
1,380 + +1.0
1,383 - +0.3
1,404 + -0.9
1,404 + -0.0
1,405 - +0.1
1,408 - -0.2
1,408 - -0.4
1,408 - -1.3
1,543 - -0.6
1,543 - +0.4
1,554 + BACOVA_00228 0.11 -1.1
1,629 + BACOVA_00228 0.15 -0.2
1,668 + BACOVA_00228 0.17 +0.5
1,675 - BACOVA_00228 0.17 -0.5
1,675 - BACOVA_00228 0.17 +0.0
1,678 + BACOVA_00228 0.18 -0.3
1,678 + BACOVA_00228 0.18 +0.4
1,679 - BACOVA_00228 0.18 -0.4
1,679 - BACOVA_00228 0.18 -0.1
1,694 - BACOVA_00228 0.18 +0.1
1,780 + BACOVA_00228 0.23 -1.0
1,781 - BACOVA_00228 0.23 -0.1
1,781 - BACOVA_00228 0.23 +0.3
1,781 - BACOVA_00228 0.23 +0.6
1,857 + BACOVA_00228 0.28 -1.4
1,862 - BACOVA_00228 0.28 -2.1
1,906 - BACOVA_00228 0.31 +0.2
1,996 + BACOVA_00228 0.36 -0.5
2,013 + BACOVA_00228 0.37 -1.3
2,014 - BACOVA_00228 0.37 -0.5
2,014 - BACOVA_00228 0.37 -0.5
2,057 + BACOVA_00228 0.39 +0.8
2,057 + BACOVA_00228 0.39 -0.4
2,069 + BACOVA_00228 0.40 +0.3
2,070 - BACOVA_00228 0.40 +0.4
2,070 - BACOVA_00228 0.40 -0.3
2,073 + BACOVA_00228 0.40 -0.3
2,073 + BACOVA_00228 0.40 +0.5
2,074 - BACOVA_00228 0.40 -0.6
2,074 - BACOVA_00228 0.40 -1.1
2,075 + BACOVA_00228 0.40 -0.8
2,083 + BACOVA_00228 0.41 -1.1
2,141 + BACOVA_00228 0.44 -0.2
2,215 - BACOVA_00228 0.48 -1.0
2,236 - BACOVA_00228 0.49 -0.9
2,262 - BACOVA_00228 0.51 -0.8
2,262 - BACOVA_00228 0.51 +0.1
2,344 + BACOVA_00228 0.55 -0.3

Or see this region's nucleotide sequence