Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02531

Experiment: mer MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02530 and OHPLBJKB_02531 are separated by 220 nucleotides OHPLBJKB_02530: OHPLBJKB_02530 - HTH-type transcriptional repressor BluR, at 2,641,367 to 2,642,098 _02530 OHPLBJKB_02531: OHPLBJKB_02531 - putative protein YdfO, at 2,642,319 to 2,642,723 _02531 Position (kb) 2642 2643Strain fitness (log2 ratio) -2 -1 0 1at 2641.331 kb on - strandat 2641.331 kb on - strandat 2641.373 kb on + strandat 2641.373 kb on + strandat 2641.411 kb on + strandat 2641.412 kb on - strandat 2641.506 kb on + strand, within OHPLBJKB_02530at 2641.506 kb on + strand, within OHPLBJKB_02530at 2641.506 kb on + strand, within OHPLBJKB_02530at 2641.506 kb on + strand, within OHPLBJKB_02530at 2641.507 kb on - strand, within OHPLBJKB_02530at 2641.537 kb on - strand, within OHPLBJKB_02530at 2641.537 kb on - strand, within OHPLBJKB_02530at 2641.540 kb on + strand, within OHPLBJKB_02530at 2641.541 kb on - strand, within OHPLBJKB_02530at 2641.541 kb on - strand, within OHPLBJKB_02530at 2641.565 kb on - strand, within OHPLBJKB_02530at 2641.665 kb on + strand, within OHPLBJKB_02530at 2641.704 kb on + strand, within OHPLBJKB_02530at 2641.718 kb on - strand, within OHPLBJKB_02530at 2641.787 kb on - strand, within OHPLBJKB_02530at 2641.920 kb on + strand, within OHPLBJKB_02530at 2642.049 kb on + strandat 2642.073 kb on - strandat 2642.074 kb on + strandat 2642.075 kb on - strandat 2642.132 kb on + strandat 2642.132 kb on + strandat 2642.133 kb on - strandat 2642.135 kb on - strandat 2642.205 kb on - strandat 2642.213 kb on + strandat 2642.225 kb on + strandat 2642.226 kb on - strandat 2642.230 kb on - strandat 2642.230 kb on - strandat 2642.298 kb on + strandat 2642.299 kb on - strandat 2642.299 kb on - strandat 2642.309 kb on + strandat 2642.428 kb on - strand, within OHPLBJKB_02531at 2642.589 kb on + strand, within OHPLBJKB_02531at 2642.683 kb on + strandat 2642.736 kb on - strandat 2642.818 kb on - strandat 2643.013 kb on - strandat 2643.127 kb on + strandat 2643.354 kb on + strandat 2643.439 kb on + strandat 2643.529 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mer MOI10
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2,641,331 - -0.7
2,641,331 - +0.7
2,641,373 + -1.0
2,641,373 + -1.8
2,641,411 + -0.4
2,641,412 - -1.4
2,641,506 + OHPLBJKB_02530 0.19 -0.7
2,641,506 + OHPLBJKB_02530 0.19 +0.3
2,641,506 + OHPLBJKB_02530 0.19 -0.2
2,641,506 + OHPLBJKB_02530 0.19 +0.2
2,641,507 - OHPLBJKB_02530 0.19 +0.7
2,641,537 - OHPLBJKB_02530 0.23 -0.7
2,641,537 - OHPLBJKB_02530 0.23 +0.5
2,641,540 + OHPLBJKB_02530 0.24 -0.4
2,641,541 - OHPLBJKB_02530 0.24 -2.1
2,641,541 - OHPLBJKB_02530 0.24 +0.6
2,641,565 - OHPLBJKB_02530 0.27 -0.7
2,641,665 + OHPLBJKB_02530 0.41 -0.4
2,641,704 + OHPLBJKB_02530 0.46 -1.3
2,641,718 - OHPLBJKB_02530 0.48 +0.3
2,641,787 - OHPLBJKB_02530 0.57 +0.2
2,641,920 + OHPLBJKB_02530 0.76 -1.1
2,642,049 + +0.2
2,642,073 - -1.5
2,642,074 + +0.5
2,642,075 - -0.2
2,642,132 + -0.4
2,642,132 + +0.3
2,642,133 - -1.5
2,642,135 - +0.4
2,642,205 - +0.5
2,642,213 + -0.2
2,642,225 + -0.1
2,642,226 - +0.3
2,642,230 - +0.6
2,642,230 - -0.1
2,642,298 + +0.3
2,642,299 - +0.6
2,642,299 - -0.3
2,642,309 + +0.2
2,642,428 - OHPLBJKB_02531 0.27 +0.2
2,642,589 + OHPLBJKB_02531 0.67 +0.3
2,642,683 + +0.3
2,642,736 - -0.5
2,642,818 - -0.5
2,643,013 - -0.1
2,643,127 + +0.0
2,643,354 + -1.3
2,643,439 + -0.2
2,643,529 + +0.7

Or see this region's nucleotide sequence