Experiment: mer MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02231 and OHPLBJKB_02232 overlap by 4 nucleotides OHPLBJKB_02232 and OHPLBJKB_02233 overlap by 4 nucleotides OHPLBJKB_02233 and OHPLBJKB_02234 overlap by 8 nucleotides OHPLBJKB_02234 and OHPLBJKB_02235 are separated by 55 nucleotides
OHPLBJKB_02231: OHPLBJKB_02231 - putative D,D-dipeptide transport system permease protein DdpB, at 2,324,903 to 2,325,925
_02231
OHPLBJKB_02232: OHPLBJKB_02232 - putative D,D-dipeptide transport system permease protein DdpC, at 2,325,922 to 2,326,818
_02232
OHPLBJKB_02233: OHPLBJKB_02233 - putative D,D-dipeptide transport ATP-binding protein DdpD, at 2,326,815 to 2,327,801
_02233
OHPLBJKB_02234: OHPLBJKB_02234 - putative D,D-dipeptide transport ATP-binding protein DdpF, at 2,327,794 to 2,328,720
_02234
OHPLBJKB_02235: OHPLBJKB_02235 - Peroxiredoxin OsmC, at 2,328,776 to 2,329,207
_02235
Position (kb)
2326
2327
2328 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2325.848 kb on + strand at 2325.848 kb on + strand at 2325.881 kb on + strand at 2325.881 kb on + strand at 2325.929 kb on + strand at 2325.992 kb on + strand at 2326.043 kb on + strand, within OHPLBJKB_02232 at 2326.043 kb on + strand, within OHPLBJKB_02232 at 2326.044 kb on - strand, within OHPLBJKB_02232 at 2326.044 kb on - strand, within OHPLBJKB_02232 at 2326.044 kb on - strand, within OHPLBJKB_02232 at 2326.044 kb on - strand, within OHPLBJKB_02232 at 2326.046 kb on + strand, within OHPLBJKB_02232 at 2326.109 kb on + strand, within OHPLBJKB_02232 at 2326.109 kb on + strand, within OHPLBJKB_02232 at 2326.229 kb on + strand, within OHPLBJKB_02232 at 2326.230 kb on - strand, within OHPLBJKB_02232 at 2326.230 kb on - strand, within OHPLBJKB_02232 at 2326.230 kb on - strand, within OHPLBJKB_02232 at 2326.326 kb on + strand, within OHPLBJKB_02232 at 2326.327 kb on - strand, within OHPLBJKB_02232 at 2326.392 kb on + strand, within OHPLBJKB_02232 at 2326.413 kb on + strand, within OHPLBJKB_02232 at 2326.413 kb on + strand, within OHPLBJKB_02232 at 2326.413 kb on + strand, within OHPLBJKB_02232 at 2326.414 kb on - strand, within OHPLBJKB_02232 at 2326.414 kb on - strand, within OHPLBJKB_02232 at 2326.414 kb on - strand, within OHPLBJKB_02232 at 2326.415 kb on + strand, within OHPLBJKB_02232 at 2326.460 kb on + strand, within OHPLBJKB_02232 at 2326.460 kb on + strand, within OHPLBJKB_02232 at 2326.460 kb on + strand, within OHPLBJKB_02232 at 2326.466 kb on + strand, within OHPLBJKB_02232 at 2326.467 kb on - strand, within OHPLBJKB_02232 at 2326.467 kb on - strand, within OHPLBJKB_02232 at 2326.474 kb on + strand, within OHPLBJKB_02232 at 2326.474 kb on + strand, within OHPLBJKB_02232 at 2326.475 kb on - strand, within OHPLBJKB_02232 at 2326.476 kb on + strand, within OHPLBJKB_02232 at 2326.476 kb on + strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.477 kb on - strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.480 kb on + strand, within OHPLBJKB_02232 at 2326.481 kb on - strand, within OHPLBJKB_02232 at 2326.481 kb on - strand, within OHPLBJKB_02232 at 2326.481 kb on - strand, within OHPLBJKB_02232 at 2326.481 kb on - strand, within OHPLBJKB_02232 at 2326.481 kb on - strand, within OHPLBJKB_02232 at 2326.542 kb on - strand, within OHPLBJKB_02232 at 2326.546 kb on - strand, within OHPLBJKB_02232 at 2326.546 kb on - strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.687 kb on + strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.688 kb on - strand, within OHPLBJKB_02232 at 2326.691 kb on + strand, within OHPLBJKB_02232 at 2326.708 kb on + strand, within OHPLBJKB_02232 at 2326.755 kb on + strand at 2326.979 kb on + strand, within OHPLBJKB_02233 at 2327.004 kb on + strand, within OHPLBJKB_02233 at 2327.005 kb on - strand, within OHPLBJKB_02233 at 2327.011 kb on + strand, within OHPLBJKB_02233 at 2327.011 kb on + strand, within OHPLBJKB_02233 at 2327.012 kb on - strand, within OHPLBJKB_02233 at 2327.012 kb on - strand, within OHPLBJKB_02233 at 2327.210 kb on + strand, within OHPLBJKB_02233 at 2327.261 kb on + strand, within OHPLBJKB_02233 at 2327.262 kb on - strand, within OHPLBJKB_02233 at 2327.418 kb on - strand, within OHPLBJKB_02233 at 2327.462 kb on + strand, within OHPLBJKB_02233 at 2327.496 kb on + strand, within OHPLBJKB_02233 at 2327.497 kb on - strand, within OHPLBJKB_02233 at 2327.505 kb on + strand, within OHPLBJKB_02233 at 2327.505 kb on + strand, within OHPLBJKB_02233 at 2327.506 kb on - strand, within OHPLBJKB_02233 at 2327.568 kb on + strand, within OHPLBJKB_02233 at 2327.568 kb on + strand, within OHPLBJKB_02233 at 2327.569 kb on - strand, within OHPLBJKB_02233 at 2327.608 kb on + strand, within OHPLBJKB_02233 at 2327.608 kb on + strand, within OHPLBJKB_02233 at 2327.620 kb on + strand, within OHPLBJKB_02233 at 2327.620 kb on + strand, within OHPLBJKB_02233 at 2327.620 kb on + strand, within OHPLBJKB_02233 at 2327.791 kb on + strand at 2327.791 kb on + strand at 2327.791 kb on + strand at 2327.792 kb on - strand at 2327.792 kb on - strand at 2327.792 kb on - strand at 2327.792 kb on - strand at 2327.792 kb on - strand at 2327.862 kb on + strand at 2327.890 kb on - strand, within OHPLBJKB_02234 at 2327.896 kb on - strand, within OHPLBJKB_02234 at 2327.903 kb on + strand, within OHPLBJKB_02234 at 2327.979 kb on - strand, within OHPLBJKB_02234 at 2327.986 kb on - strand, within OHPLBJKB_02234 at 2327.986 kb on - strand, within OHPLBJKB_02234 at 2328.011 kb on - strand, within OHPLBJKB_02234 at 2328.123 kb on + strand, within OHPLBJKB_02234 at 2328.124 kb on - strand, within OHPLBJKB_02234 at 2328.124 kb on - strand, within OHPLBJKB_02234 at 2328.129 kb on + strand, within OHPLBJKB_02234 at 2328.129 kb on + strand, within OHPLBJKB_02234 at 2328.129 kb on + strand, within OHPLBJKB_02234 at 2328.130 kb on - strand, within OHPLBJKB_02234 at 2328.130 kb on - strand, within OHPLBJKB_02234 at 2328.132 kb on + strand, within OHPLBJKB_02234 at 2328.133 kb on - strand, within OHPLBJKB_02234 at 2328.133 kb on - strand, within OHPLBJKB_02234 at 2328.243 kb on + strand, within OHPLBJKB_02234 at 2328.357 kb on - strand, within OHPLBJKB_02234 at 2328.379 kb on + strand, within OHPLBJKB_02234 at 2328.379 kb on + strand, within OHPLBJKB_02234 at 2328.379 kb on + strand, within OHPLBJKB_02234 at 2328.379 kb on + strand, within OHPLBJKB_02234 at 2328.379 kb on + strand, within OHPLBJKB_02234 at 2328.380 kb on - strand, within OHPLBJKB_02234 at 2328.380 kb on - strand, within OHPLBJKB_02234 at 2328.380 kb on - strand, within OHPLBJKB_02234 at 2328.410 kb on + strand, within OHPLBJKB_02234 at 2328.410 kb on + strand, within OHPLBJKB_02234 at 2328.410 kb on + strand, within OHPLBJKB_02234 at 2328.411 kb on - strand, within OHPLBJKB_02234 at 2328.411 kb on - strand, within OHPLBJKB_02234 at 2328.411 kb on - strand, within OHPLBJKB_02234 at 2328.417 kb on + strand, within OHPLBJKB_02234 at 2328.417 kb on + strand, within OHPLBJKB_02234 at 2328.443 kb on - strand, within OHPLBJKB_02234 at 2328.505 kb on + strand, within OHPLBJKB_02234 at 2328.506 kb on - strand, within OHPLBJKB_02234 at 2328.506 kb on - strand, within OHPLBJKB_02234 at 2328.506 kb on - strand, within OHPLBJKB_02234 at 2328.569 kb on + strand, within OHPLBJKB_02234 at 2328.570 kb on - strand, within OHPLBJKB_02234
Per-strain Table
Position Strand Gene LocusTag Fraction mer MOI10 remove 2,325,848 + +1.6 2,325,848 + +0.6 2,325,881 + -0.0 2,325,881 + -0.1 2,325,929 + -0.6 2,325,992 + -1.5 2,326,043 + OHPLBJKB_02232 0.13 -0.3 2,326,043 + OHPLBJKB_02232 0.13 -0.3 2,326,044 - OHPLBJKB_02232 0.14 -0.6 2,326,044 - OHPLBJKB_02232 0.14 -0.4 2,326,044 - OHPLBJKB_02232 0.14 -0.2 2,326,044 - OHPLBJKB_02232 0.14 +1.7 2,326,046 + OHPLBJKB_02232 0.14 +1.1 2,326,109 + OHPLBJKB_02232 0.21 +0.8 2,326,109 + OHPLBJKB_02232 0.21 -0.2 2,326,229 + OHPLBJKB_02232 0.34 -0.2 2,326,230 - OHPLBJKB_02232 0.34 +0.3 2,326,230 - OHPLBJKB_02232 0.34 +0.1 2,326,230 - OHPLBJKB_02232 0.34 +0.0 2,326,326 + OHPLBJKB_02232 0.45 +0.3 2,326,327 - OHPLBJKB_02232 0.45 +0.7 2,326,392 + OHPLBJKB_02232 0.52 -0.4 2,326,413 + OHPLBJKB_02232 0.55 -0.5 2,326,413 + OHPLBJKB_02232 0.55 +0.6 2,326,413 + OHPLBJKB_02232 0.55 +0.2 2,326,414 - OHPLBJKB_02232 0.55 -0.4 2,326,414 - OHPLBJKB_02232 0.55 +0.3 2,326,414 - OHPLBJKB_02232 0.55 +0.4 2,326,415 + OHPLBJKB_02232 0.55 -0.5 2,326,460 + OHPLBJKB_02232 0.60 -0.7 2,326,460 + OHPLBJKB_02232 0.60 -1.2 2,326,460 + OHPLBJKB_02232 0.60 -0.6 2,326,466 + OHPLBJKB_02232 0.61 +0.7 2,326,467 - OHPLBJKB_02232 0.61 -2.4 2,326,467 - OHPLBJKB_02232 0.61 -0.6 2,326,474 + OHPLBJKB_02232 0.62 -0.3 2,326,474 + OHPLBJKB_02232 0.62 -0.5 2,326,475 - OHPLBJKB_02232 0.62 -0.9 2,326,476 + OHPLBJKB_02232 0.62 -0.1 2,326,476 + OHPLBJKB_02232 0.62 +1.0 2,326,477 - OHPLBJKB_02232 0.62 -1.1 2,326,477 - OHPLBJKB_02232 0.62 -0.2 2,326,477 - OHPLBJKB_02232 0.62 +0.7 2,326,477 - OHPLBJKB_02232 0.62 -0.5 2,326,477 - OHPLBJKB_02232 0.62 +0.4 2,326,477 - OHPLBJKB_02232 0.62 +0.6 2,326,477 - OHPLBJKB_02232 0.62 +0.1 2,326,477 - OHPLBJKB_02232 0.62 -0.3 2,326,477 - OHPLBJKB_02232 0.62 -0.3 2,326,480 + OHPLBJKB_02232 0.62 +0.4 2,326,480 + OHPLBJKB_02232 0.62 -0.5 2,326,480 + OHPLBJKB_02232 0.62 -0.1 2,326,480 + OHPLBJKB_02232 0.62 -0.4 2,326,480 + OHPLBJKB_02232 0.62 -0.5 2,326,480 + OHPLBJKB_02232 0.62 -0.6 2,326,480 + OHPLBJKB_02232 0.62 -0.4 2,326,481 - OHPLBJKB_02232 0.62 +0.1 2,326,481 - OHPLBJKB_02232 0.62 -0.2 2,326,481 - OHPLBJKB_02232 0.62 +0.5 2,326,481 - OHPLBJKB_02232 0.62 -0.5 2,326,481 - OHPLBJKB_02232 0.62 -0.4 2,326,542 - OHPLBJKB_02232 0.69 +0.3 2,326,546 - OHPLBJKB_02232 0.70 +0.6 2,326,546 - OHPLBJKB_02232 0.70 -0.1 2,326,687 + OHPLBJKB_02232 0.85 +0.8 2,326,687 + OHPLBJKB_02232 0.85 -0.9 2,326,687 + OHPLBJKB_02232 0.85 +0.3 2,326,687 + OHPLBJKB_02232 0.85 -0.1 2,326,687 + OHPLBJKB_02232 0.85 -0.6 2,326,687 + OHPLBJKB_02232 0.85 -0.2 2,326,687 + OHPLBJKB_02232 0.85 +0.7 2,326,687 + OHPLBJKB_02232 0.85 -0.3 2,326,687 + OHPLBJKB_02232 0.85 +0.2 2,326,687 + OHPLBJKB_02232 0.85 -1.7 2,326,688 - OHPLBJKB_02232 0.85 -1.1 2,326,688 - OHPLBJKB_02232 0.85 -0.8 2,326,688 - OHPLBJKB_02232 0.85 +0.4 2,326,688 - OHPLBJKB_02232 0.85 +0.9 2,326,688 - OHPLBJKB_02232 0.85 -1.6 2,326,688 - OHPLBJKB_02232 0.85 -0.4 2,326,688 - OHPLBJKB_02232 0.85 +0.4 2,326,688 - OHPLBJKB_02232 0.85 -0.6 2,326,688 - OHPLBJKB_02232 0.85 -0.0 2,326,688 - OHPLBJKB_02232 0.85 -0.4 2,326,688 - OHPLBJKB_02232 0.85 +0.3 2,326,688 - OHPLBJKB_02232 0.85 +0.8 2,326,688 - OHPLBJKB_02232 0.85 -0.7 2,326,688 - OHPLBJKB_02232 0.85 -1.1 2,326,691 + OHPLBJKB_02232 0.86 +0.3 2,326,708 + OHPLBJKB_02232 0.88 +0.3 2,326,755 + +0.1 2,326,979 + OHPLBJKB_02233 0.17 +0.4 2,327,004 + OHPLBJKB_02233 0.19 +0.3 2,327,005 - OHPLBJKB_02233 0.19 -0.0 2,327,011 + OHPLBJKB_02233 0.20 +1.0 2,327,011 + OHPLBJKB_02233 0.20 +1.2 2,327,012 - OHPLBJKB_02233 0.20 +0.3 2,327,012 - OHPLBJKB_02233 0.20 +0.4 2,327,210 + OHPLBJKB_02233 0.40 -0.0 2,327,261 + OHPLBJKB_02233 0.45 -0.1 2,327,262 - OHPLBJKB_02233 0.45 -0.5 2,327,418 - OHPLBJKB_02233 0.61 +0.4 2,327,462 + OHPLBJKB_02233 0.66 -0.2 2,327,496 + OHPLBJKB_02233 0.69 -0.6 2,327,497 - OHPLBJKB_02233 0.69 +0.2 2,327,505 + OHPLBJKB_02233 0.70 +1.0 2,327,505 + OHPLBJKB_02233 0.70 +0.3 2,327,506 - OHPLBJKB_02233 0.70 -0.4 2,327,568 + OHPLBJKB_02233 0.76 -0.6 2,327,568 + OHPLBJKB_02233 0.76 +0.1 2,327,569 - OHPLBJKB_02233 0.76 +0.5 2,327,608 + OHPLBJKB_02233 0.80 -0.1 2,327,608 + OHPLBJKB_02233 0.80 -0.9 2,327,620 + OHPLBJKB_02233 0.82 -1.2 2,327,620 + OHPLBJKB_02233 0.82 +0.8 2,327,620 + OHPLBJKB_02233 0.82 -0.3 2,327,791 + +1.2 2,327,791 + -0.3 2,327,791 + -0.6 2,327,792 - +0.0 2,327,792 - -0.3 2,327,792 - -1.1 2,327,792 - -0.1 2,327,792 - -0.1 2,327,862 + -0.1 2,327,890 - OHPLBJKB_02234 0.10 +0.3 2,327,896 - OHPLBJKB_02234 0.11 +0.4 2,327,903 + OHPLBJKB_02234 0.12 -0.0 2,327,979 - OHPLBJKB_02234 0.20 +0.1 2,327,986 - OHPLBJKB_02234 0.21 -0.4 2,327,986 - OHPLBJKB_02234 0.21 -0.2 2,328,011 - OHPLBJKB_02234 0.23 -1.1 2,328,123 + OHPLBJKB_02234 0.35 +0.5 2,328,124 - OHPLBJKB_02234 0.36 -1.1 2,328,124 - OHPLBJKB_02234 0.36 +0.1 2,328,129 + OHPLBJKB_02234 0.36 +1.3 2,328,129 + OHPLBJKB_02234 0.36 +0.4 2,328,129 + OHPLBJKB_02234 0.36 +0.3 2,328,130 - OHPLBJKB_02234 0.36 -0.2 2,328,130 - OHPLBJKB_02234 0.36 +0.7 2,328,132 + OHPLBJKB_02234 0.36 -1.1 2,328,133 - OHPLBJKB_02234 0.37 +0.1 2,328,133 - OHPLBJKB_02234 0.37 +0.1 2,328,243 + OHPLBJKB_02234 0.48 +0.5 2,328,357 - OHPLBJKB_02234 0.61 +0.0 2,328,379 + OHPLBJKB_02234 0.63 -0.4 2,328,379 + OHPLBJKB_02234 0.63 -0.5 2,328,379 + OHPLBJKB_02234 0.63 +0.0 2,328,379 + OHPLBJKB_02234 0.63 +0.6 2,328,379 + OHPLBJKB_02234 0.63 -0.8 2,328,380 - OHPLBJKB_02234 0.63 +1.3 2,328,380 - OHPLBJKB_02234 0.63 -0.7 2,328,380 - OHPLBJKB_02234 0.63 +1.0 2,328,410 + OHPLBJKB_02234 0.66 +1.4 2,328,410 + OHPLBJKB_02234 0.66 +1.1 2,328,410 + OHPLBJKB_02234 0.66 -1.1 2,328,411 - OHPLBJKB_02234 0.67 +0.5 2,328,411 - OHPLBJKB_02234 0.67 +0.6 2,328,411 - OHPLBJKB_02234 0.67 -0.2 2,328,417 + OHPLBJKB_02234 0.67 +1.0 2,328,417 + OHPLBJKB_02234 0.67 +0.9 2,328,443 - OHPLBJKB_02234 0.70 +0.5 2,328,505 + OHPLBJKB_02234 0.77 -0.1 2,328,506 - OHPLBJKB_02234 0.77 +2.6 2,328,506 - OHPLBJKB_02234 0.77 +0.8 2,328,506 - OHPLBJKB_02234 0.77 +0.5 2,328,569 + OHPLBJKB_02234 0.84 +0.3 2,328,570 - OHPLBJKB_02234 0.84 -0.2
Or see this region's nucleotide sequence