Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02887

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02885 and MPMX26_02886 are separated by 276 nucleotidesMPMX26_02886 and MPMX26_02887 are separated by 76 nucleotidesMPMX26_02887 and MPMX26_02888 are separated by 145 nucleotidesMPMX26_02888 and MPMX26_02889 are separated by 51 nucleotides MPMX26_02885: MPMX26_02885 - hypothetical protein, at 2,986,580 to 2,987,224 _02885 MPMX26_02886: MPMX26_02886 - hypothetical protein, at 2,987,501 to 2,987,827 _02886 MPMX26_02887: MPMX26_02887 - General stress protein 39, at 2,987,904 to 2,988,770 _02887 MPMX26_02888: MPMX26_02888 - Single-stranded DNA-binding protein, at 2,988,916 to 2,989,500 _02888 MPMX26_02889: MPMX26_02889 - Inner membrane transport protein YajR, at 2,989,552 to 2,990,916 _02889 Position (kb) 2987 2988 2989Strain fitness (log2 ratio) -1 0 1at 2987.011 kb on - strand, within MPMX26_02885at 2987.504 kb on - strandat 2987.619 kb on + strand, within MPMX26_02886at 2987.706 kb on + strand, within MPMX26_02886at 2987.771 kb on + strand, within MPMX26_02886at 2988.099 kb on + strand, within MPMX26_02887at 2988.233 kb on + strand, within MPMX26_02887at 2988.574 kb on + strand, within MPMX26_02887at 2988.578 kb on + strand, within MPMX26_02887at 2988.643 kb on + strand, within MPMX26_02887at 2988.654 kb on + strand, within MPMX26_02887at 2988.913 kb on - strandat 2989.573 kb on - strandat 2989.579 kb on - strandat 2989.599 kb on - strandat 2989.634 kb on - strandat 2989.634 kb on - strandat 2989.655 kb on - strandat 2989.655 kb on - strandat 2989.655 kb on - strandat 2989.658 kb on + strandat 2989.660 kb on - strandat 2989.666 kb on + strandat 2989.666 kb on - strandat 2989.674 kb on - strandat 2989.676 kb on - strandat 2989.702 kb on + strand, within MPMX26_02889at 2989.707 kb on + strand, within MPMX26_02889at 2989.712 kb on + strand, within MPMX26_02889at 2989.715 kb on - strand, within MPMX26_02889at 2989.732 kb on + strand, within MPMX26_02889at 2989.740 kb on - strand, within MPMX26_02889at 2989.740 kb on - strand, within MPMX26_02889at 2989.740 kb on - strand, within MPMX26_02889at 2989.767 kb on - strand, within MPMX26_02889at 2989.768 kb on - strand, within MPMX26_02889

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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2,987,011 - MPMX26_02885 0.67 -0.8
2,987,504 - +0.4
2,987,619 + MPMX26_02886 0.36 +0.2
2,987,706 + MPMX26_02886 0.63 +0.3
2,987,771 + MPMX26_02886 0.83 +0.4
2,988,099 + MPMX26_02887 0.22 +0.2
2,988,233 + MPMX26_02887 0.38 +0.0
2,988,574 + MPMX26_02887 0.77 -0.3
2,988,578 + MPMX26_02887 0.78 +0.4
2,988,643 + MPMX26_02887 0.85 -0.8
2,988,654 + MPMX26_02887 0.87 -0.1
2,988,913 - +0.5
2,989,573 - +0.2
2,989,579 - +0.1
2,989,599 - -0.6
2,989,634 - -0.3
2,989,634 - -0.1
2,989,655 - +0.5
2,989,655 - -0.3
2,989,655 - +0.2
2,989,658 + -0.1
2,989,660 - +0.5
2,989,666 + -0.6
2,989,666 - +0.6
2,989,674 - +0.5
2,989,676 - +0.2
2,989,702 + MPMX26_02889 0.11 +0.3
2,989,707 + MPMX26_02889 0.11 +0.4
2,989,712 + MPMX26_02889 0.12 -0.8
2,989,715 - MPMX26_02889 0.12 -0.6
2,989,732 + MPMX26_02889 0.13 +0.3
2,989,740 - MPMX26_02889 0.14 +0.2
2,989,740 - MPMX26_02889 0.14 +0.5
2,989,740 - MPMX26_02889 0.14 +0.4
2,989,767 - MPMX26_02889 0.16 +0.1
2,989,768 - MPMX26_02889 0.16 -0.3

Or see this region's nucleotide sequence