Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00233

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00231 and MPMX26_00232 are separated by 148 nucleotidesMPMX26_00232 and MPMX26_00233 are separated by 227 nucleotidesMPMX26_00233 and MPMX26_00234 are separated by 453 nucleotides MPMX26_00231: MPMX26_00231 - Putative multidrug export ATP-binding/permease protein, at 250,426 to 252,228 _00231 MPMX26_00232: MPMX26_00232 - hypothetical protein, at 252,377 to 252,991 _00232 MPMX26_00233: MPMX26_00233 - HTH-type transcriptional regulator KipR, at 253,219 to 253,989 _00233 MPMX26_00234: MPMX26_00234 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 254,443 to 256,527 _00234 Position (kb) 253 254Strain fitness (log2 ratio) -2 -1 0 1at 252.349 kb on + strandat 252.349 kb on + strandat 252.354 kb on + strandat 252.374 kb on + strandat 252.503 kb on + strand, within MPMX26_00232at 252.539 kb on + strand, within MPMX26_00232at 252.680 kb on + strand, within MPMX26_00232at 252.686 kb on + strand, within MPMX26_00232at 252.688 kb on + strand, within MPMX26_00232at 252.741 kb on + strand, within MPMX26_00232at 252.741 kb on + strand, within MPMX26_00232at 252.795 kb on + strand, within MPMX26_00232at 252.795 kb on + strand, within MPMX26_00232at 252.854 kb on + strand, within MPMX26_00232at 252.937 kb on + strandat 252.941 kb on + strandat 252.951 kb on + strandat 253.003 kb on + strandat 253.030 kb on + strandat 253.044 kb on - strandat 253.062 kb on - strandat 253.062 kb on - strandat 253.067 kb on - strandat 253.100 kb on - strandat 253.220 kb on - strandat 253.291 kb on - strandat 253.303 kb on - strand, within MPMX26_00233at 253.319 kb on - strand, within MPMX26_00233at 253.333 kb on - strand, within MPMX26_00233at 253.333 kb on - strand, within MPMX26_00233at 253.333 kb on - strand, within MPMX26_00233at 253.338 kb on - strand, within MPMX26_00233at 253.338 kb on - strand, within MPMX26_00233at 253.338 kb on - strand, within MPMX26_00233at 253.348 kb on - strand, within MPMX26_00233at 253.387 kb on - strand, within MPMX26_00233at 253.387 kb on - strand, within MPMX26_00233at 253.406 kb on - strand, within MPMX26_00233at 253.406 kb on - strand, within MPMX26_00233at 253.412 kb on - strand, within MPMX26_00233at 253.413 kb on - strand, within MPMX26_00233at 253.417 kb on - strand, within MPMX26_00233at 253.417 kb on - strand, within MPMX26_00233at 253.417 kb on - strand, within MPMX26_00233at 253.417 kb on - strand, within MPMX26_00233at 253.469 kb on - strand, within MPMX26_00233at 253.469 kb on - strand, within MPMX26_00233at 253.469 kb on - strand, within MPMX26_00233at 253.504 kb on - strand, within MPMX26_00233at 253.504 kb on - strand, within MPMX26_00233at 253.514 kb on - strand, within MPMX26_00233at 253.618 kb on - strand, within MPMX26_00233at 253.623 kb on - strand, within MPMX26_00233at 253.641 kb on - strand, within MPMX26_00233at 253.649 kb on - strand, within MPMX26_00233at 253.656 kb on - strand, within MPMX26_00233at 253.656 kb on - strand, within MPMX26_00233at 253.656 kb on - strand, within MPMX26_00233at 253.661 kb on - strand, within MPMX26_00233at 253.669 kb on - strand, within MPMX26_00233at 253.741 kb on - strand, within MPMX26_00233at 253.741 kb on - strand, within MPMX26_00233at 253.741 kb on - strand, within MPMX26_00233at 253.741 kb on - strand, within MPMX26_00233at 253.746 kb on - strand, within MPMX26_00233at 253.751 kb on - strand, within MPMX26_00233at 253.751 kb on - strand, within MPMX26_00233at 253.760 kb on - strand, within MPMX26_00233at 253.777 kb on - strand, within MPMX26_00233at 253.777 kb on - strand, within MPMX26_00233at 253.782 kb on - strand, within MPMX26_00233at 253.852 kb on - strand, within MPMX26_00233at 253.876 kb on - strand, within MPMX26_00233at 253.884 kb on - strand, within MPMX26_00233at 253.888 kb on - strand, within MPMX26_00233at 253.904 kb on - strand, within MPMX26_00233at 254.308 kb on + strandat 254.692 kb on - strand, within MPMX26_00234

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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252,349 + +0.2
252,349 + -0.2
252,354 + +0.2
252,374 + +0.6
252,503 + MPMX26_00232 0.20 +0.6
252,539 + MPMX26_00232 0.26 -0.4
252,680 + MPMX26_00232 0.49 +0.3
252,686 + MPMX26_00232 0.50 +0.1
252,688 + MPMX26_00232 0.51 +0.3
252,741 + MPMX26_00232 0.59 +1.3
252,741 + MPMX26_00232 0.59 +0.3
252,795 + MPMX26_00232 0.68 +0.2
252,795 + MPMX26_00232 0.68 -1.1
252,854 + MPMX26_00232 0.78 +1.2
252,937 + -1.2
252,941 + -1.8
252,951 + +0.0
253,003 + +1.2
253,030 + -0.5
253,044 - +0.1
253,062 - -1.5
253,062 - -0.4
253,067 - -0.3
253,100 - -0.1
253,220 - +0.4
253,291 - +0.1
253,303 - MPMX26_00233 0.11 +0.2
253,319 - MPMX26_00233 0.13 -1.4
253,333 - MPMX26_00233 0.15 -0.0
253,333 - MPMX26_00233 0.15 +0.5
253,333 - MPMX26_00233 0.15 -0.2
253,338 - MPMX26_00233 0.15 +0.2
253,338 - MPMX26_00233 0.15 -1.1
253,338 - MPMX26_00233 0.15 -0.1
253,348 - MPMX26_00233 0.17 +1.0
253,387 - MPMX26_00233 0.22 -0.2
253,387 - MPMX26_00233 0.22 -0.4
253,406 - MPMX26_00233 0.24 -0.3
253,406 - MPMX26_00233 0.24 +0.3
253,412 - MPMX26_00233 0.25 -0.0
253,413 - MPMX26_00233 0.25 +0.4
253,417 - MPMX26_00233 0.26 +0.4
253,417 - MPMX26_00233 0.26 -0.4
253,417 - MPMX26_00233 0.26 +0.0
253,417 - MPMX26_00233 0.26 -0.5
253,469 - MPMX26_00233 0.32 -0.8
253,469 - MPMX26_00233 0.32 -1.2
253,469 - MPMX26_00233 0.32 -0.6
253,504 - MPMX26_00233 0.37 -0.1
253,504 - MPMX26_00233 0.37 +0.2
253,514 - MPMX26_00233 0.38 +0.2
253,618 - MPMX26_00233 0.52 -0.2
253,623 - MPMX26_00233 0.52 -0.1
253,641 - MPMX26_00233 0.55 +0.0
253,649 - MPMX26_00233 0.56 -1.0
253,656 - MPMX26_00233 0.57 +0.1
253,656 - MPMX26_00233 0.57 -1.7
253,656 - MPMX26_00233 0.57 +0.5
253,661 - MPMX26_00233 0.57 -0.5
253,669 - MPMX26_00233 0.58 -0.3
253,741 - MPMX26_00233 0.68 -0.4
253,741 - MPMX26_00233 0.68 -0.8
253,741 - MPMX26_00233 0.68 +0.3
253,741 - MPMX26_00233 0.68 +0.2
253,746 - MPMX26_00233 0.68 -0.6
253,751 - MPMX26_00233 0.69 -0.2
253,751 - MPMX26_00233 0.69 -1.1
253,760 - MPMX26_00233 0.70 -0.8
253,777 - MPMX26_00233 0.72 +0.2
253,777 - MPMX26_00233 0.72 +0.2
253,782 - MPMX26_00233 0.73 +0.2
253,852 - MPMX26_00233 0.82 +0.1
253,876 - MPMX26_00233 0.85 +0.1
253,884 - MPMX26_00233 0.86 +1.1
253,888 - MPMX26_00233 0.87 +0.6
253,904 - MPMX26_00233 0.89 +0.0
254,308 + +0.8
254,692 - MPMX26_00234 0.12 -0.0

Or see this region's nucleotide sequence