Strain Fitness in Escherichia fergusonii Becca around EFB2_04531

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,753,491	+		EFB2_04530	0.66	-0.3
4,753,491	+		EFB2_04530	0.66	+2.5
4,753,491	+		EFB2_04530	0.66	+0.7
4,753,491	+		EFB2_04530	0.66	-0.7
4,753,492	-		EFB2_04530	0.66	+0.7
4,753,496	+		EFB2_04530	0.66	-1.4
4,753,496	+		EFB2_04530	0.66	+0.1
4,753,496	+		EFB2_04530	0.66	-1.5
4,753,496	+		EFB2_04530	0.66	+1.7
4,753,496	+		EFB2_04530	0.66	+1.5
4,753,496	+		EFB2_04530	0.66	+0.5
4,753,496	+		EFB2_04530	0.66	-0.5
4,753,496	+		EFB2_04530	0.66	-0.2
4,753,496	+		EFB2_04530	0.66	-1.3
4,753,496	+		EFB2_04530	0.66	-0.3
4,753,496	+		EFB2_04530	0.66	+0.8
4,753,496	+		EFB2_04530	0.66	-0.6
4,753,497	-		EFB2_04530	0.66	-0.1
4,753,497	-		EFB2_04530	0.66	-2.3
4,753,497	-		EFB2_04530	0.66	+1.0
4,753,497	-		EFB2_04530	0.66	+0.6
4,753,497	-		EFB2_04530	0.66	-2.0
4,753,497	-		EFB2_04530	0.66	+0.3
4,753,497	-		EFB2_04530	0.66	+0.5
4,753,497	-		EFB2_04530	0.66	+1.1
4,753,497	-		EFB2_04530	0.66	-0.9
4,753,497	-		EFB2_04530	0.66	-2.5
4,753,497	-		EFB2_04530	0.66	+1.2
4,753,568	+		EFB2_04530	0.71	+0.3
4,753,568	+		EFB2_04530	0.71	+0.2
4,753,569	-		EFB2_04530	0.71	-0.7
4,753,569	-		EFB2_04530	0.71	+1.7
4,753,569	-		EFB2_04530	0.71	+0.3
4,753,586	+		EFB2_04530	0.72	-0.6
4,753,586	+		EFB2_04530	0.72	-0.3
4,753,587	-		EFB2_04530	0.72	-1.9
4,753,587	-		EFB2_04530	0.72	+1.5
4,753,587	-		EFB2_04530	0.72	+0.2
4,753,587	-		EFB2_04530	0.72	+0.9
4,753,587	-		EFB2_04530	0.72	+0.0
4,753,597	-		EFB2_04530	0.72	-1.2
4,753,617	+		EFB2_04530	0.74	+1.2
4,753,617	+		EFB2_04530	0.74	+0.6
4,753,618	-		EFB2_04530	0.74	-0.4
4,753,626	-		EFB2_04530	0.74	+0.4
4,753,628	+		EFB2_04530	0.74	+0.8
4,753,628	+		EFB2_04530	0.74	+0.2
4,753,628	+		EFB2_04530	0.74	-0.0
4,753,628	+		EFB2_04530	0.74	+0.1
4,753,628	+		EFB2_04530	0.74	+0.7
4,753,628	+		EFB2_04530	0.74	-0.6
4,753,628	+		EFB2_04530	0.74	+0.5
4,753,628	+		EFB2_04530	0.74	+1.1
4,753,628	+		EFB2_04530	0.74	-2.7
4,753,628	+		EFB2_04530	0.74	-0.5
4,753,628	+		EFB2_04530	0.74	-3.0
4,753,628	+		EFB2_04530	0.74	+0.5
4,753,628	+		EFB2_04530	0.74	+0.3
4,753,629	-		EFB2_04530	0.74	-2.8
4,753,629	-		EFB2_04530	0.74	+0.3
4,753,629	-		EFB2_04530	0.74	-1.5
4,753,629	-		EFB2_04530	0.74	+0.3
4,753,629	-		EFB2_04530	0.74	-0.9
4,753,629	-		EFB2_04530	0.74	+0.4
4,753,629	-		EFB2_04530	0.74	-1.3
4,753,629	-		EFB2_04530	0.74	+0.1
4,753,629	-		EFB2_04530	0.74	+0.3
4,753,629	-		EFB2_04530	0.74	-0.1
4,753,629	-		EFB2_04530	0.74	-0.2
4,753,631	+		EFB2_04530	0.75	+1.9
4,753,631	+		EFB2_04530	0.75	-1.4
4,753,631	+		EFB2_04530	0.75	-0.9
4,753,632	-		EFB2_04530	0.75	+0.3
4,753,632	-		EFB2_04530	0.75	+0.1
4,753,632	-		EFB2_04530	0.75	-0.2
4,753,632	-		EFB2_04530	0.75	-2.4
4,753,632	-		EFB2_04530	0.75	+0.3
4,753,632	-		EFB2_04530	0.75	-1.9
4,753,632	-		EFB2_04530	0.75	-0.1
4,753,632	-		EFB2_04530	0.75	+0.7
4,753,632	-		EFB2_04530	0.75	+1.4
4,753,632	-		EFB2_04530	0.75	+1.6
4,753,632	-		EFB2_04530	0.75	-0.6
4,753,632	-		EFB2_04530	0.75	-0.0
4,753,632	-		EFB2_04530	0.75	-0.9
4,753,635	+		EFB2_04530	0.75	-1.4
4,753,636	-		EFB2_04530	0.75	+0.1
4,753,636	-		EFB2_04530	0.75	-1.5
4,753,636	-		EFB2_04530	0.75	+0.6
4,753,656	+		EFB2_04530	0.76	-3.0
4,753,656	+		EFB2_04530	0.76	-1.3
4,753,656	+		EFB2_04530	0.76	+0.0
4,753,656	+		EFB2_04530	0.76	+1.3
4,753,656	+		EFB2_04530	0.76	-1.2
4,753,656	+		EFB2_04530	0.76	-0.5
4,753,656	+		EFB2_04530	0.76	-1.2
4,753,657	-		EFB2_04530	0.76	-0.8
4,753,657	-		EFB2_04530	0.76	-0.6
4,753,657	-		EFB2_04530	0.76	-1.6
4,753,658	+		EFB2_04530	0.76	+0.9
4,753,658	+		EFB2_04530	0.76	-2.9
4,753,659	-		EFB2_04530	0.76	-0.6
4,753,659	-		EFB2_04530	0.76	+1.2
4,753,659	-		EFB2_04530	0.76	-1.3
4,753,659	-		EFB2_04530	0.76	+0.2
4,753,659	-		EFB2_04530	0.76	+0.6
4,753,677	+		EFB2_04530	0.78	+1.1
4,753,678	-		EFB2_04530	0.78	+2.1
4,753,678	-		EFB2_04530	0.78	+1.0
4,753,678	-		EFB2_04530	0.78	-1.3
4,753,679	+		EFB2_04530	0.78	+0.3
4,753,687	+		EFB2_04530	0.78	+1.4
4,753,688	-		EFB2_04530	0.78	-0.8
4,753,697	-		EFB2_04530	0.79	-2.8
4,753,711	+		EFB2_04530	0.80	+1.3
4,753,733	+		EFB2_04530	0.81	-0.2
4,753,733	+		EFB2_04530	0.81	-0.6
4,753,733	+		EFB2_04530	0.81	+0.7
4,753,734	-		EFB2_04530	0.81	-1.3
4,753,734	-		EFB2_04530	0.81	+0.9
4,753,734	-		EFB2_04530	0.81	+3.1
4,753,734	-		EFB2_04530	0.81	-0.2
4,753,734	-		EFB2_04530	0.81	+0.3
4,753,746	+		EFB2_04530	0.82	+0.7
4,753,746	+		EFB2_04530	0.82	+0.9
4,753,746	+		EFB2_04530	0.82	+0.8
4,753,746	+		EFB2_04530	0.82	-2.3
4,753,746	+		EFB2_04530	0.82	+0.7
4,753,746	+		EFB2_04530	0.82	-2.1
4,753,747	-		EFB2_04530	0.82	-0.8
4,753,747	-		EFB2_04530	0.82	-2.1
4,753,747	-		EFB2_04530	0.82	+1.3
4,753,747	-		EFB2_04530	0.82	-0.2
4,753,749	+		EFB2_04530	0.82	-1.5
4,753,749	+		EFB2_04530	0.82	-0.8
4,753,749	+		EFB2_04530	0.82	-0.0
4,753,749	+		EFB2_04530	0.82	-0.3
4,753,749	+		EFB2_04530	0.82	+1.4
4,753,750	-		EFB2_04530	0.82	-0.5
4,753,750	-		EFB2_04530	0.82	-0.9
4,753,750	-		EFB2_04530	0.82	-1.5
4,753,750	-		EFB2_04530	0.82	-0.7
4,753,750	-		EFB2_04530	0.82	-0.2
4,753,751	+		EFB2_04530	0.82	-1.9
4,753,751	+		EFB2_04530	0.82	+0.1
4,753,751	+		EFB2_04530	0.82	+0.1
4,753,751	+		EFB2_04530	0.82	+0.5
4,753,752	-		EFB2_04530	0.82	+1.6
4,753,752	-		EFB2_04530	0.82	+0.6
4,753,752	-		EFB2_04530	0.82	+0.8
4,753,752	-		EFB2_04530	0.82	-0.4
4,753,752	-		EFB2_04530	0.82	-0.9
4,753,752	-		EFB2_04530	0.82	-0.7
4,753,752	-		EFB2_04530	0.82	-0.0
4,753,752	-		EFB2_04530	0.82	-0.7
4,753,752	-		EFB2_04530	0.82	-0.1
4,753,767	+		EFB2_04530	0.83	+0.2
4,753,767	+		EFB2_04530	0.83	+0.2
4,753,770	+		EFB2_04530	0.84	-0.6
4,753,771	-		EFB2_04530	0.84	+0.2
4,753,771	-		EFB2_04530	0.84	+0.7
4,753,771	-		EFB2_04530	0.84	+1.1
4,753,818	-		EFB2_04530	0.87	-0.1
4,753,841	-		EFB2_04530	0.88	-0.5
4,753,908	+				-0.6
4,753,908	+				+0.4
4,753,972	+				+1.5
4,753,972	+				-0.4
4,753,972	+				-0.2
4,753,972	+				+0.8
4,753,973	-				+0.4
4,753,973	-				+1.0
4,753,980	+				-2.1
4,753,981	-				+0.5
4,753,981	-				-1.7
4,753,981	-				-0.9
4,753,981	-				-0.7
4,753,999	+				+0.8
4,753,999	+				+0.5
4,753,999	+				+0.3
4,753,999	+				-0.0
4,754,000	-				-0.6
4,754,029	+				+1.4
4,754,029	+				-1.4
4,754,048	+				+0.2
4,754,048	+				-0.1
4,754,048	+				-1.1
4,754,048	+				+0.4
4,754,049	-				-0.9
4,754,049	-				-0.0
4,754,049	-				+0.1
4,754,049	-				+0.0
4,754,049	-				-0.7
4,754,049	-				-0.1
4,754,049	-				-0.5
4,754,049	-				-1.1
4,754,049	-				-0.1
4,754,051	-				-0.2
4,754,059	-				-0.4
4,754,092	+				-0.6
4,754,092	+				-1.1
4,754,092	+				+0.8
4,754,092	+				-0.3
4,754,092	+				+0.7
4,754,092	+				-0.6
4,754,092	+				+0.9
4,754,092	+				-1.2
4,754,092	+				+0.4
4,754,092	+				-0.5
4,754,093	-				+0.2
4,754,093	-				+0.2
4,754,093	-				-3.7
4,754,093	-				+0.7
4,754,093	-				-3.4
4,754,093	-				-3.4
4,754,097	-				+0.1
4,754,103	+				+0.9
4,754,103	+				-1.7
4,754,103	+				+1.1
4,754,103	+				+0.4
4,754,103	+				-0.9
4,754,104	-				+0.0
4,754,104	-				-0.8
4,754,108	+				-1.3
4,754,109	-				+0.3
4,754,110	+				+0.0
4,754,110	+				-2.1
4,754,111	-				-1.8
4,754,111	-				-1.5
4,754,111	-				+0.2
4,754,111	-				-0.8
4,754,111	-				+0.9
4,754,111	-				-0.3
4,754,111	-				-1.1
4,754,111	-				+2.0
4,754,114	+				-2.0
4,754,114	+				-2.5
4,754,114	+				+0.1
4,754,114	+				+0.9
4,754,114	+				-3.1
4,754,114	+				-3.5
4,754,114	+				-0.8
4,754,115	-				+0.7
4,754,115	-				-0.4
4,754,115	-				+0.9
4,754,115	-				+0.0
4,754,115	-				-1.7
4,754,115	-				-3.5
4,754,115	-				+0.2
4,754,115	-				-0.6
4,754,115	-				-0.5
4,754,132	+				+0.7
4,754,132	+				+1.1
4,754,132	+				+0.3
4,754,133	-				+1.3
4,754,133	-				-0.5
4,754,149	+				-2.6
4,754,170	+				+1.7
4,754,170	+				-0.1
4,754,170	+				-0.3
4,754,171	-				-0.2
4,754,226	+				+0.7
4,754,226	+				-2.7
4,754,226	+				+1.4
4,754,226	+				-0.7
4,754,226	+				+1.2
4,754,226	+				-2.5
4,754,226	+				+0.1
4,754,226	+				+1.0
4,754,227	-				+0.8
4,754,227	-				+0.3
4,754,227	-				-0.0
4,754,227	-				-0.4
4,754,227	-				+0.0
4,754,227	-				-1.0
4,754,227	-				+0.4
4,754,227	-				-3.0
4,754,227	-				-1.7
4,754,227	-				-0.8
4,754,227	-				-0.1
4,754,227	-				-0.2
4,754,227	-				+0.5
4,754,227	-				-0.6
4,754,228	+				+1.0
4,754,228	+				+1.0
4,754,228	+				+0.7
4,754,228	+				+0.8
4,754,228	+				+0.0
4,754,228	+				+0.8
4,754,228	+				-0.5
4,754,228	+				+0.2
4,754,228	+				+1.4
4,754,229	-				-3.0
4,754,229	-				+0.7
4,754,229	-				-1.1
4,754,229	-				+0.6
4,754,229	-				+0.1
4,754,229	-				+0.6
4,754,255	+				-1.1
4,754,255	+				-0.2
4,754,255	+				+2.4
4,754,255	+				+0.1
4,754,255	+				-0.8
4,754,255	+				-1.8
4,754,255	+				-1.3
4,754,255	+				+0.4
4,754,256	-				-0.7
4,754,256	-				+0.6
4,754,256	-				-0.5
4,754,256	-				-2.1
4,754,270	+				-0.2
4,754,271	-				+1.6
4,754,271	-				+0.2
4,754,271	-				+0.6
4,754,284	+				+0.3
4,754,284	+				-0.1
4,754,284	+				+0.4
4,754,284	+				-0.3
4,754,285	-				+0.2
4,754,313	+				+0.2
4,754,313	+				-1.4
4,754,315	+				+0.5
4,754,315	+				-1.6
4,754,315	+				+0.8
4,754,315	+				+1.1
4,754,315	+				-1.3
4,754,315	+				+0.0
4,754,315	+				-0.3
4,754,315	+				+1.5
4,754,315	+				+0.4
4,754,315	+				+0.0
4,754,315	+				+0.6
4,754,315	+				+0.7
4,754,315	+				+0.9
4,754,316	-				+0.1
4,754,316	-				+1.8
4,754,316	-				+1.4
4,754,316	-				-0.1
4,754,316	-				+0.4
4,754,316	-				+0.8
4,754,388	+				-2.8
4,754,388	+				+1.2
4,754,388	+				+0.9
4,754,389	-				-0.7
4,754,389	-				+0.6
4,754,389	-				+1.7
4,754,389	-				-1.7
4,754,389	-				+0.1
4,754,389	-				-0.4
4,754,502	-		EFB2_04531	0.17	+0.5
4,754,502	-		EFB2_04531	0.17	+0.3
4,754,502	-		EFB2_04531	0.17	-0.3
4,754,502	-		EFB2_04531	0.17	+0.2
4,754,525	+		EFB2_04531	0.25	-0.7
4,754,559	+		EFB2_04531	0.37	+0.9
4,754,559	+		EFB2_04531	0.37	+2.7
4,754,559	+		EFB2_04531	0.37	+0.3
4,754,559	+		EFB2_04531	0.37	+0.4
4,754,559	+		EFB2_04531	0.37	+1.4
4,754,559	+		EFB2_04531	0.37	-1.3
4,754,559	+		EFB2_04531	0.37	+0.5
4,754,559	+		EFB2_04531	0.37	-0.5
4,754,560	-		EFB2_04531	0.38	-0.9
4,754,560	-		EFB2_04531	0.38	-0.1
4,754,560	-		EFB2_04531	0.38	-0.5
4,754,560	-		EFB2_04531	0.38	+1.0
4,754,597	-		EFB2_04531	0.51	+0.9
4,754,597	-		EFB2_04531	0.51	-0.0
4,754,597	-		EFB2_04531	0.51	-1.3
4,754,597	-		EFB2_04531	0.51	+0.2
4,754,597	-		EFB2_04531	0.51	-2.6
4,754,686	+		EFB2_04531	0.82	-0.4
4,754,686	+		EFB2_04531	0.82	-1.2
4,754,686	+		EFB2_04531	0.82	-0.3
4,754,686	+		EFB2_04531	0.82	-0.6
4,754,687	-		EFB2_04531	0.83	+0.9
4,754,687	-		EFB2_04531	0.83	-2.7
4,754,687	-		EFB2_04531	0.83	+1.3
4,754,687	-		EFB2_04531	0.83	-2.4
4,754,687	-		EFB2_04531	0.83	+0.8
4,754,687	-		EFB2_04531	0.83	-3.5
4,754,736	+				+0.7
4,754,736	+				-3.0
4,754,736	+				+0.3
4,754,736	+				-2.3
4,754,736	+				+0.3
4,754,736	+				-0.1
4,754,736	+				-1.0
4,754,736	+				+0.1
4,754,736	+				-1.1
4,754,736	+				+0.9
4,754,736	+				-2.1
4,754,737	-				+1.1
4,754,737	-				+0.4
4,754,737	-				+0.1
4,754,737	-				+0.6
4,754,737	-				+0.1
4,754,737	-				-0.3
4,754,737	-				-0.6
4,754,737	-				+0.1
4,754,737	-				+0.5
4,754,737	-				+0.2
4,754,737	-				+0.6
4,754,737	-				+0.8
4,754,737	-				+1.6
4,754,737	-				-0.7
4,754,737	-				-0.2
4,754,737	-				-2.7
4,754,737	-				-1.1
4,754,737	-				-0.0
4,754,737	-				-2.6
4,754,737	-				+0.6
4,754,737	-				+2.2
4,754,737	-				-0.3
4,754,740	+				-0.3
4,754,740	+				+0.1
4,754,740	+				+1.3
4,754,740	+				-0.5
4,754,740	+				-0.5
4,754,740	+				-0.0
4,754,740	+				-0.7
4,754,740	+				+1.3
4,754,741	-				+0.2
4,754,741	-				+0.3
4,754,741	-				+0.7
4,754,741	-				+1.1
4,754,741	-				+0.3
4,754,741	-				+0.7
4,754,741	-				+0.3
4,754,741	-				-0.4
4,754,741	-				+0.5
4,754,741	-				-0.7
4,754,741	-				+0.1
4,754,810	-				-0.7
4,754,810	-				+1.3
4,754,811	+				-2.5
4,754,811	+				-0.4
4,754,811	+				-3.8
4,754,811	+				-0.3
4,754,816	+				+0.2
4,755,404	-				-0.8
4,755,410	-				+0.3
4,755,410	-				+0.3
4,755,410	-				-1.8
4,755,444	+				-0.9
4,755,444	+				-1.2
4,755,444	+				+0.3
4,755,444	+				-1.0
4,755,444	+				+0.4
4,755,445	-				+0.6
4,755,445	-				+0.7
4,755,445	-				+2.3
4,755,445	-				+0.8
4,755,445	-				+0.3
4,755,445	-				+1.0
4,755,445	-				-0.2
4,755,445	-				-0.0
4,755,447	+				+1.6
4,755,447	+				+0.5
4,755,447	+				+1.3
4,755,447	+				+0.2
4,755,447	+				+0.1
4,755,447	+				-0.8
4,755,447	+				-0.5
4,755,447	+				-1.0
4,755,447	+				-0.7
4,755,447	+				-0.4
4,755,447	+				-0.7
4,755,448	-				+1.2
4,755,448	-				+1.7
4,755,448	-				+0.3
4,755,448	-				-0.9
4,755,448	-				+0.0
4,755,448	-				+0.5
4,755,448	-				+1.3
4,755,448	-				-1.8
4,755,448	-				-0.9
4,755,493	+				-2.0
4,755,493	+				-0.9
4,755,494	-				+0.8
4,755,494	-				+1.2
4,755,494	-				+0.4
4,755,494	-				-1.9
4,755,527	+				+0.7
4,755,527	+				+1.0
4,755,528	-				+0.2
4,755,528	-				+0.6
4,755,554	+				+0.9
4,755,554	+				+0.2
4,755,554	+				+0.6
4,755,554	+				+0.6
4,755,554	+				-1.2
4,755,554	+				+0.4
4,755,555	-				-0.7
4,755,555	-				-0.6
4,755,555	-				+0.1
4,755,555	-				+0.2
4,755,555	-				+0.5
4,755,555	-				-2.6
4,755,630	+				-1.1
4,755,630	+				-4.1
4,755,630	+				-0.3
4,755,630	+				-3.1
4,755,630	+				-0.6
4,755,630	+				+1.4
4,755,631	-				+0.3
4,755,631	-				-1.0
4,755,660	+				-2.2
4,755,661	-				-0.9
4,755,661	-				-0.1