Strain Fitness in Escherichia fergusonii Becca around EFB2_03333

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,486,794	+		EFB2_03332	0.22	+0.2
3,486,794	+		EFB2_03332	0.22	+0.4
3,486,795	-		EFB2_03332	0.22	+0.4
3,486,795	-		EFB2_03332	0.22	+1.0
3,486,795	-		EFB2_03332	0.22	-0.9
3,486,835	+		EFB2_03332	0.25	-1.4
3,486,835	+		EFB2_03332	0.25	-1.1
3,486,835	+		EFB2_03332	0.25	-1.0
3,486,835	+		EFB2_03332	0.25	-0.3
3,486,835	+		EFB2_03332	0.25	-2.1
3,486,835	+		EFB2_03332	0.25	-0.3
3,486,835	+		EFB2_03332	0.25	-2.1
3,486,836	-		EFB2_03332	0.25	-2.4
3,486,836	-		EFB2_03332	0.25	-1.5
3,486,836	-		EFB2_03332	0.25	+0.1
3,486,836	-		EFB2_03332	0.25	-0.4
3,486,836	-		EFB2_03332	0.25	-0.9
3,486,836	-		EFB2_03332	0.25	+0.8
3,486,836	-		EFB2_03332	0.25	-0.2
3,486,836	-		EFB2_03332	0.25	-2.1
3,486,843	+		EFB2_03332	0.26	+0.0
3,486,844	-		EFB2_03332	0.26	+1.5
3,486,989	-		EFB2_03332	0.39	-0.7
3,486,989	-		EFB2_03332	0.39	+0.6
3,486,999	+		EFB2_03332	0.40	-0.1
3,487,000	-		EFB2_03332	0.40	-0.5
3,487,002	+		EFB2_03332	0.40	-0.5
3,487,003	-		EFB2_03332	0.40	-2.7
3,487,003	-		EFB2_03332	0.40	-0.5
3,487,003	-		EFB2_03332	0.40	+0.2
3,487,034	-		EFB2_03332	0.43	-1.5
3,487,045	+		EFB2_03332	0.44	-2.2
3,487,067	+		EFB2_03332	0.46	+1.7
3,487,067	+		EFB2_03332	0.46	-1.3
3,487,067	+		EFB2_03332	0.46	+0.1
3,487,067	+		EFB2_03332	0.46	+0.8
3,487,067	+		EFB2_03332	0.46	-1.3
3,487,067	+		EFB2_03332	0.46	+0.4
3,487,067	+		EFB2_03332	0.46	+0.6
3,487,068	-		EFB2_03332	0.46	-0.6
3,487,068	-		EFB2_03332	0.46	-1.0
3,487,068	-		EFB2_03332	0.46	-1.9
3,487,068	-		EFB2_03332	0.46	-0.3
3,487,068	-		EFB2_03332	0.46	-0.3
3,487,068	-		EFB2_03332	0.46	+2.0
3,487,068	-		EFB2_03332	0.46	+2.1
3,487,068	-		EFB2_03332	0.46	-0.1
3,487,071	+		EFB2_03332	0.46	+0.1
3,487,072	-		EFB2_03332	0.46	-0.2
3,487,072	-		EFB2_03332	0.46	+0.8
3,487,120	+		EFB2_03332	0.50	+0.5
3,487,120	+		EFB2_03332	0.50	-0.9
3,487,121	-		EFB2_03332	0.50	+0.1
3,487,129	+		EFB2_03332	0.51	+0.1
3,487,130	-		EFB2_03332	0.51	-0.4
3,487,130	-		EFB2_03332	0.51	-0.2
3,487,130	-		EFB2_03332	0.51	+1.2
3,487,174	+		EFB2_03332	0.55	-2.2
3,487,174	+		EFB2_03332	0.55	-0.1
3,487,174	+		EFB2_03332	0.55	-1.4
3,487,174	+		EFB2_03332	0.55	-3.1
3,487,174	+		EFB2_03332	0.55	-1.4
3,487,174	+		EFB2_03332	0.55	-0.2
3,487,174	+		EFB2_03332	0.55	+0.5
3,487,174	+		EFB2_03332	0.55	+1.0
3,487,175	-		EFB2_03332	0.55	-1.2
3,487,175	-		EFB2_03332	0.55	-0.8
3,487,175	-		EFB2_03332	0.55	-1.9
3,487,175	-		EFB2_03332	0.55	+0.2
3,487,175	-		EFB2_03332	0.55	-1.0
3,487,175	-		EFB2_03332	0.55	-2.1
3,487,175	-		EFB2_03332	0.55	-0.3
3,487,208	+		EFB2_03332	0.58	+0.8
3,487,208	+		EFB2_03332	0.58	-0.1
3,487,208	+		EFB2_03332	0.58	+1.6
3,487,208	+		EFB2_03332	0.58	+0.2
3,487,208	+		EFB2_03332	0.58	-1.3
3,487,209	-		EFB2_03332	0.58	+0.1
3,487,209	-		EFB2_03332	0.58	-0.2
3,487,209	-		EFB2_03332	0.58	-2.4
3,487,209	-		EFB2_03332	0.58	+1.5
3,487,209	-		EFB2_03332	0.58	-2.5
3,487,209	-		EFB2_03332	0.58	-2.7
3,487,221	+		EFB2_03332	0.59	-1.0
3,487,221	+		EFB2_03332	0.59	+2.5
3,487,222	-		EFB2_03332	0.59	-0.1
3,487,222	-		EFB2_03332	0.59	-2.2
3,487,222	-		EFB2_03332	0.59	-0.6
3,487,258	+		EFB2_03332	0.63	+1.5
3,487,258	+		EFB2_03332	0.63	-2.4
3,487,258	+		EFB2_03332	0.63	-1.3
3,487,258	+		EFB2_03332	0.63	+0.6
3,487,259	-		EFB2_03332	0.63	-0.3
3,487,259	-		EFB2_03332	0.63	-2.1
3,487,259	-		EFB2_03332	0.63	-0.8
3,487,259	-		EFB2_03332	0.63	+1.1
3,487,303	+		EFB2_03332	0.67	+0.1
3,487,303	+		EFB2_03332	0.67	+0.1
3,487,303	+		EFB2_03332	0.67	+0.9
3,487,303	+		EFB2_03332	0.67	-2.6
3,487,303	+		EFB2_03332	0.67	-2.4
3,487,303	+		EFB2_03332	0.67	+0.5
3,487,303	+		EFB2_03332	0.67	-1.4
3,487,303	+		EFB2_03332	0.67	-0.8
3,487,303	+		EFB2_03332	0.67	+0.3
3,487,303	+		EFB2_03332	0.67	-0.5
3,487,304	-		EFB2_03332	0.67	+1.4
3,487,304	-		EFB2_03332	0.67	-0.1
3,487,304	-		EFB2_03332	0.67	+2.0
3,487,304	-		EFB2_03332	0.67	-2.2
3,487,304	-		EFB2_03332	0.67	-0.1
3,487,304	-		EFB2_03332	0.67	-0.3
3,487,304	-		EFB2_03332	0.67	+1.0
3,487,304	-		EFB2_03332	0.67	-3.1
3,487,304	-		EFB2_03332	0.67	+0.4
3,487,305	+		EFB2_03332	0.67	-1.6
3,487,305	+		EFB2_03332	0.67	+0.8
3,487,305	+		EFB2_03332	0.67	+0.6
3,487,305	+		EFB2_03332	0.67	+0.2
3,487,305	+		EFB2_03332	0.67	-0.7
3,487,305	+		EFB2_03332	0.67	+0.3
3,487,305	+		EFB2_03332	0.67	+2.0
3,487,305	+		EFB2_03332	0.67	+0.4
3,487,306	-		EFB2_03332	0.67	-2.3
3,487,306	-		EFB2_03332	0.67	-0.3
3,487,306	-		EFB2_03332	0.67	-0.7
3,487,306	-		EFB2_03332	0.67	+0.1
3,487,306	-		EFB2_03332	0.67	-1.0
3,487,306	-		EFB2_03332	0.67	+0.1
3,487,306	-		EFB2_03332	0.67	+0.1
3,487,307	+		EFB2_03332	0.67	-0.2
3,487,307	+		EFB2_03332	0.67	-1.9
3,487,307	+		EFB2_03332	0.67	-2.7
3,487,307	+		EFB2_03332	0.67	-3.4
3,487,307	+		EFB2_03332	0.67	-0.6
3,487,307	+		EFB2_03332	0.67	+1.5
3,487,307	+		EFB2_03332	0.67	-0.2
3,487,307	+		EFB2_03332	0.67	-1.5
3,487,307	+		EFB2_03332	0.67	+0.1
3,487,307	+		EFB2_03332	0.67	+0.3
3,487,307	+		EFB2_03332	0.67	-1.4
3,487,307	+		EFB2_03332	0.67	-1.3
3,487,307	+		EFB2_03332	0.67	-0.1
3,487,307	+		EFB2_03332	0.67	+2.0
3,487,307	+		EFB2_03332	0.67	+1.1
3,487,307	+		EFB2_03332	0.67	-0.1
3,487,307	+		EFB2_03332	0.67	-0.5
3,487,307	+		EFB2_03332	0.67	-0.0
3,487,307	+		EFB2_03332	0.67	-1.3
3,487,307	+		EFB2_03332	0.67	-0.7
3,487,307	+		EFB2_03332	0.67	-1.1
3,487,307	+		EFB2_03332	0.67	-1.9
3,487,307	+		EFB2_03332	0.67	+0.9
3,487,307	+		EFB2_03332	0.67	-1.1
3,487,307	+		EFB2_03332	0.67	+0.5
3,487,307	+		EFB2_03332	0.67	-3.1
3,487,307	+		EFB2_03332	0.67	-0.3
3,487,307	+		EFB2_03332	0.67	+1.7
3,487,307	+		EFB2_03332	0.67	+0.8
3,487,307	+		EFB2_03332	0.67	+2.5
3,487,307	+		EFB2_03332	0.67	+0.7
3,487,307	+		EFB2_03332	0.67	-3.4
3,487,307	+		EFB2_03332	0.67	-1.4
3,487,307	+		EFB2_03332	0.67	-1.1
3,487,307	+		EFB2_03332	0.67	-2.0
3,487,307	+		EFB2_03332	0.67	+2.0
3,487,307	+		EFB2_03332	0.67	-1.0
3,487,307	+		EFB2_03332	0.67	-3.1
3,487,307	+		EFB2_03332	0.67	-2.1
3,487,307	+		EFB2_03332	0.67	+1.2
3,487,307	+		EFB2_03332	0.67	-0.3
3,487,307	+		EFB2_03332	0.67	-1.6
3,487,307	+		EFB2_03332	0.67	-1.6
3,487,307	+		EFB2_03332	0.67	-2.1
3,487,307	+		EFB2_03332	0.67	-0.9
3,487,307	+		EFB2_03332	0.67	+0.8
3,487,307	+		EFB2_03332	0.67	+0.5
3,487,307	+		EFB2_03332	0.67	+0.2
3,487,307	+		EFB2_03332	0.67	-3.2
3,487,307	+		EFB2_03332	0.67	+5.6
3,487,307	+		EFB2_03332	0.67	-2.0
3,487,307	+		EFB2_03332	0.67	-1.1
3,487,307	+		EFB2_03332	0.67	-1.1
3,487,307	+		EFB2_03332	0.67	-0.4
3,487,307	+		EFB2_03332	0.67	+0.4
3,487,307	+		EFB2_03332	0.67	+0.4
3,487,307	+		EFB2_03332	0.67	-0.1
3,487,307	+		EFB2_03332	0.67	+1.3
3,487,307	+		EFB2_03332	0.67	-1.6
3,487,307	+		EFB2_03332	0.67	-2.2
3,487,307	+		EFB2_03332	0.67	-0.5
3,487,307	+		EFB2_03332	0.67	-1.0
3,487,308	-		EFB2_03332	0.67	+0.2
3,487,308	-		EFB2_03332	0.67	+1.7
3,487,308	-		EFB2_03332	0.67	+0.1
3,487,308	-		EFB2_03332	0.67	+0.6
3,487,308	-		EFB2_03332	0.67	+0.2
3,487,308	-		EFB2_03332	0.67	-2.8
3,487,308	-		EFB2_03332	0.67	-0.7
3,487,308	-		EFB2_03332	0.67	-2.5
3,487,308	-		EFB2_03332	0.67	-0.9
3,487,308	-		EFB2_03332	0.67	+0.6
3,487,308	-		EFB2_03332	0.67	-0.1
3,487,308	-		EFB2_03332	0.67	+0.4
3,487,308	-		EFB2_03332	0.67	+1.3
3,487,308	-		EFB2_03332	0.67	+0.0
3,487,308	-		EFB2_03332	0.67	+0.5
3,487,308	-		EFB2_03332	0.67	+0.0
3,487,308	-		EFB2_03332	0.67	-0.5
3,487,308	-		EFB2_03332	0.67	-0.4
3,487,308	-		EFB2_03332	0.67	+2.1
3,487,308	-		EFB2_03332	0.67	-1.7
3,487,308	-		EFB2_03332	0.67	-1.7
3,487,308	-		EFB2_03332	0.67	-0.1
3,487,308	-		EFB2_03332	0.67	+0.9
3,487,308	-		EFB2_03332	0.67	-0.6
3,487,308	-		EFB2_03332	0.67	-0.9
3,487,308	-		EFB2_03332	0.67	+0.2
3,487,308	-		EFB2_03332	0.67	-0.1
3,487,308	-		EFB2_03332	0.67	+0.5
3,487,308	-		EFB2_03332	0.67	+0.9
3,487,308	-		EFB2_03332	0.67	-1.9
3,487,308	-		EFB2_03332	0.67	+0.9
3,487,308	-		EFB2_03332	0.67	-0.3
3,487,308	-		EFB2_03332	0.67	-0.7
3,487,308	-		EFB2_03332	0.67	+0.5
3,487,308	-		EFB2_03332	0.67	+0.6
3,487,308	-		EFB2_03332	0.67	+1.5
3,487,308	-		EFB2_03332	0.67	-1.3
3,487,308	-		EFB2_03332	0.67	-1.0
3,487,308	-		EFB2_03332	0.67	+0.5
3,487,308	-		EFB2_03332	0.67	-0.1
3,487,308	-		EFB2_03332	0.67	+1.1
3,487,308	-		EFB2_03332	0.67	+0.1
3,487,308	-		EFB2_03332	0.67	-0.5
3,487,308	-		EFB2_03332	0.67	+1.7
3,487,308	-		EFB2_03332	0.67	+0.0
3,487,308	-		EFB2_03332	0.67	-0.5
3,487,308	-		EFB2_03332	0.67	+0.7
3,487,308	-		EFB2_03332	0.67	+1.5
3,487,308	-		EFB2_03332	0.67	-1.5
3,487,308	-		EFB2_03332	0.67	+1.1
3,487,308	-		EFB2_03332	0.67	+1.1
3,487,308	-		EFB2_03332	0.67	-0.2
3,487,308	-		EFB2_03332	0.67	+0.7
3,487,308	-		EFB2_03332	0.67	+0.5
3,487,308	-		EFB2_03332	0.67	-0.6
3,487,308	-		EFB2_03332	0.67	-2.0
3,487,308	-		EFB2_03332	0.67	-0.6
3,487,308	-		EFB2_03332	0.67	-0.2
3,487,308	-		EFB2_03332	0.67	-0.9
3,487,308	-		EFB2_03332	0.67	-1.0
3,487,308	-		EFB2_03332	0.67	+0.3
3,487,308	-		EFB2_03332	0.67	-0.3
3,487,308	-		EFB2_03332	0.67	+1.1
3,487,308	-		EFB2_03332	0.67	+1.0
3,487,308	-		EFB2_03332	0.67	+1.7
3,487,308	-		EFB2_03332	0.67	-2.2
3,487,308	-		EFB2_03332	0.67	-1.7
3,487,308	-		EFB2_03332	0.67	-2.4
3,487,308	-		EFB2_03332	0.67	-1.0
3,487,308	-		EFB2_03332	0.67	-0.8
3,487,308	-		EFB2_03332	0.67	+0.2
3,487,308	-		EFB2_03332	0.67	-2.4
3,487,308	-		EFB2_03332	0.67	-1.6
3,487,308	-		EFB2_03332	0.67	+0.8
3,487,308	-		EFB2_03332	0.67	-0.2
3,487,308	-		EFB2_03332	0.67	-2.0
3,487,308	-		EFB2_03332	0.67	+1.5
3,487,413	+		EFB2_03332	0.76	+0.9
3,487,480	+		EFB2_03332	0.82	-0.1
3,487,480	+		EFB2_03332	0.82	+1.2
3,487,480	+		EFB2_03332	0.82	-0.8
3,487,480	+		EFB2_03332	0.82	-0.5
3,487,480	+		EFB2_03332	0.82	+0.1
3,487,480	+		EFB2_03332	0.82	-0.5
3,487,480	+		EFB2_03332	0.82	-1.3
3,487,480	+		EFB2_03332	0.82	+1.4
3,487,480	+		EFB2_03332	0.82	-1.4
3,487,480	+		EFB2_03332	0.82	-1.1
3,487,480	+		EFB2_03332	0.82	+0.7
3,487,480	+		EFB2_03332	0.82	+2.5
3,487,481	-		EFB2_03332	0.82	+1.9
3,487,481	-		EFB2_03332	0.82	+0.7
3,487,481	-		EFB2_03332	0.82	+1.7
3,487,481	-		EFB2_03332	0.82	+0.5
3,487,481	-		EFB2_03332	0.82	-2.6
3,487,481	-		EFB2_03332	0.82	+1.4
3,487,481	-		EFB2_03332	0.82	-0.3
3,487,484	+		EFB2_03332	0.83	-1.4
3,487,484	+		EFB2_03332	0.83	+0.5
3,487,484	+		EFB2_03332	0.83	-0.2
3,487,484	+		EFB2_03332	0.83	-1.3
3,487,484	+		EFB2_03332	0.83	-0.1
3,487,484	+		EFB2_03332	0.83	-0.1
3,487,484	+		EFB2_03332	0.83	+0.8
3,487,484	+		EFB2_03332	0.83	+1.9
3,487,484	+		EFB2_03332	0.83	+0.3
3,487,484	+		EFB2_03332	0.83	-0.6
3,487,484	+		EFB2_03332	0.83	-0.5
3,487,484	+		EFB2_03332	0.83	-0.7
3,487,484	+		EFB2_03332	0.83	+0.4
3,487,484	+		EFB2_03332	0.83	+0.9
3,487,484	+		EFB2_03332	0.83	-1.0
3,487,484	+		EFB2_03332	0.83	-0.4
3,487,484	+		EFB2_03332	0.83	+0.3
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