Strain Fitness in Escherichia fergusonii Becca around EFB2_02964

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,094,043	-				-0.2
3,094,055	+				+0.0
3,094,060	-				-0.1
3,094,105	+				-0.9
3,094,105	+				-1.1
3,094,105	+				+1.5
3,094,112	+				-0.7
3,094,113	-				-0.1
3,094,113	-				+0.4
3,094,117	+				-0.5
3,094,135	-				-2.1
3,094,197	-				-1.0
3,094,209	+				+1.6
3,094,209	+				+0.3
3,094,209	+				-1.5
3,094,212	+				-2.6
3,094,212	+				-0.7
3,094,213	-				+0.3
3,094,213	-				+0.1
3,094,235	+				-1.9
3,094,292	-				+1.0
3,094,334	+		EFB2_02963	0.15	+1.4
3,094,334	+		EFB2_02963	0.15	+0.9
3,094,334	+		EFB2_02963	0.15	-1.8
3,094,334	+		EFB2_02963	0.15	+0.4
3,094,335	-		EFB2_02963	0.15	-1.8
3,094,357	+		EFB2_02963	0.18	-3.1
3,094,357	+		EFB2_02963	0.18	-0.2
3,094,358	-		EFB2_02963	0.18	+0.6
3,094,358	-		EFB2_02963	0.18	-1.7
3,094,358	-		EFB2_02963	0.18	-1.8
3,094,361	+		EFB2_02963	0.18	+0.1
3,094,361	+		EFB2_02963	0.18	-1.0
3,094,361	+		EFB2_02963	0.18	+0.7
3,094,361	+		EFB2_02963	0.18	-0.6
3,094,361	+		EFB2_02963	0.18	-0.3
3,094,382	-		EFB2_02963	0.21	-2.0
3,094,382	-		EFB2_02963	0.21	-1.9
3,094,382	-		EFB2_02963	0.21	-0.9
3,094,415	-		EFB2_02963	0.25	+0.0
3,094,415	-		EFB2_02963	0.25	+0.6
3,094,415	-		EFB2_02963	0.25	+0.7
3,094,415	-		EFB2_02963	0.25	-1.2
3,094,434	+		EFB2_02963	0.27	-0.8
3,094,435	-		EFB2_02963	0.28	+0.1
3,094,459	+		EFB2_02963	0.31	-1.6
3,094,459	+		EFB2_02963	0.31	-1.0
3,094,459	+		EFB2_02963	0.31	+0.2
3,094,459	+		EFB2_02963	0.31	+0.1
3,094,460	-		EFB2_02963	0.31	-0.7
3,094,460	-		EFB2_02963	0.31	-0.3
3,094,483	+		EFB2_02963	0.34	-1.9
3,094,484	-		EFB2_02963	0.34	+4.1
3,094,486	-		EFB2_02963	0.34	-2.4
3,094,486	-		EFB2_02963	0.34	+1.2
3,094,486	-		EFB2_02963	0.34	-1.3
3,094,523	+		EFB2_02963	0.39	-0.4
3,094,523	+		EFB2_02963	0.39	-1.9
3,094,523	+		EFB2_02963	0.39	-0.9
3,094,523	+		EFB2_02963	0.39	-1.9
3,094,523	+		EFB2_02963	0.39	-3.2
3,094,524	-		EFB2_02963	0.39	+3.5
3,094,524	-		EFB2_02963	0.39	-0.2
3,094,524	-		EFB2_02963	0.39	+1.1
3,094,524	-		EFB2_02963	0.39	-1.2
3,094,526	-		EFB2_02963	0.39	-2.2
3,094,573	-		EFB2_02963	0.45	-0.7
3,094,573	-		EFB2_02963	0.45	-0.5
3,094,573	-		EFB2_02963	0.45	-3.4
3,094,573	-		EFB2_02963	0.45	+1.3
3,094,606	+		EFB2_02963	0.49	-1.1
3,094,621	-		EFB2_02963	0.51	-0.1
3,094,621	-		EFB2_02963	0.51	-2.9
3,094,621	-		EFB2_02963	0.51	-2.1
3,094,624	+		EFB2_02963	0.51	-1.1
3,094,625	-		EFB2_02963	0.52	+0.1
3,094,641	+		EFB2_02963	0.54	+0.2
3,094,641	+		EFB2_02963	0.54	+2.2
3,094,642	-		EFB2_02963	0.54	+2.0
3,094,642	-		EFB2_02963	0.54	-1.6
3,094,642	-		EFB2_02963	0.54	+0.2
3,094,642	-		EFB2_02963	0.54	+0.0
3,094,717	+		EFB2_02963	0.63	-1.1
3,094,717	+		EFB2_02963	0.63	+0.1
3,094,719	+		EFB2_02963	0.63	-2.5
3,094,719	+		EFB2_02963	0.63	-0.7
3,094,719	+		EFB2_02963	0.63	+0.5
3,094,719	+		EFB2_02963	0.63	-0.2
3,094,719	+		EFB2_02963	0.63	+1.8
3,094,719	+		EFB2_02963	0.63	-0.8
3,094,719	+		EFB2_02963	0.63	+0.1
3,094,719	+		EFB2_02963	0.63	-0.9
3,094,719	+		EFB2_02963	0.63	+0.3
3,094,719	+		EFB2_02963	0.63	-0.1
3,094,719	+		EFB2_02963	0.63	+2.6
3,094,719	+		EFB2_02963	0.63	-0.6
3,094,719	+		EFB2_02963	0.63	-0.3
3,094,719	+		EFB2_02963	0.63	+1.9
3,094,719	+		EFB2_02963	0.63	-1.1
3,094,719	+		EFB2_02963	0.63	+1.3
3,094,719	+		EFB2_02963	0.63	-0.3
3,094,719	+		EFB2_02963	0.63	+1.3
3,094,720	-		EFB2_02963	0.64	+0.3
3,094,720	-		EFB2_02963	0.64	+0.1
3,094,720	-		EFB2_02963	0.64	-0.7
3,094,720	-		EFB2_02963	0.64	+0.2
3,094,720	-		EFB2_02963	0.64	-2.7
3,094,720	-		EFB2_02963	0.64	+0.4
3,094,720	-		EFB2_02963	0.64	-1.4
3,094,720	-		EFB2_02963	0.64	-1.0
3,094,720	-		EFB2_02963	0.64	+1.1
3,094,720	-		EFB2_02963	0.64	+0.1
3,094,720	-		EFB2_02963	0.64	-1.6
3,094,720	-		EFB2_02963	0.64	-3.3
3,094,720	-		EFB2_02963	0.64	-0.4
3,094,720	-		EFB2_02963	0.64	-0.1
3,094,720	-		EFB2_02963	0.64	+0.7
3,094,720	-		EFB2_02963	0.64	-0.1
3,094,720	-		EFB2_02963	0.64	+2.5
3,094,720	-		EFB2_02963	0.64	+0.5
3,094,720	-		EFB2_02963	0.64	+0.3
3,094,720	-		EFB2_02963	0.64	-2.4
3,094,720	-		EFB2_02963	0.64	+0.6
3,094,720	-		EFB2_02963	0.64	-1.6
3,094,720	-		EFB2_02963	0.64	+2.6
3,094,720	-		EFB2_02963	0.64	+1.8
3,094,720	-		EFB2_02963	0.64	+1.5
3,094,720	-		EFB2_02963	0.64	-2.6
3,094,720	-		EFB2_02963	0.64	-0.5
3,094,720	-		EFB2_02963	0.64	-1.1
3,094,720	-		EFB2_02963	0.64	+0.8
3,094,720	-		EFB2_02963	0.64	+0.8
3,094,720	-		EFB2_02963	0.64	-0.9
3,094,734	+		EFB2_02963	0.65	-0.7
3,094,735	-		EFB2_02963	0.65	-2.8
3,094,735	-		EFB2_02963	0.65	+0.5
3,094,741	+		EFB2_02963	0.66	+0.8
3,094,741	+		EFB2_02963	0.66	+1.2
3,094,741	+		EFB2_02963	0.66	-0.3
3,094,742	-		EFB2_02963	0.66	-2.0
3,094,742	-		EFB2_02963	0.66	+1.5
3,094,742	-		EFB2_02963	0.66	+1.4
3,094,742	-		EFB2_02963	0.66	+0.6
3,094,765	+		EFB2_02963	0.69	-2.1
3,094,765	+		EFB2_02963	0.69	+0.8
3,094,767	+		EFB2_02963	0.69	-1.5
3,094,767	+		EFB2_02963	0.69	+1.4
3,094,767	+		EFB2_02963	0.69	+2.1
3,094,773	+		EFB2_02963	0.70	-0.9
3,094,773	+		EFB2_02963	0.70	+1.6
3,094,773	+		EFB2_02963	0.70	+1.3
3,094,773	+		EFB2_02963	0.70	-0.9
3,094,773	+		EFB2_02963	0.70	-0.7
3,094,773	+		EFB2_02963	0.70	+0.8
3,094,773	+		EFB2_02963	0.70	-3.1
3,094,773	+		EFB2_02963	0.70	+0.8
3,094,774	-		EFB2_02963	0.70	-1.2
3,094,774	-		EFB2_02963	0.70	-0.6
3,094,774	-		EFB2_02963	0.70	-0.1
3,094,774	-		EFB2_02963	0.70	-1.0
3,094,774	-		EFB2_02963	0.70	+0.7
3,094,774	-		EFB2_02963	0.70	+1.5
3,094,799	+		EFB2_02963	0.73	-0.9
3,094,800	-		EFB2_02963	0.74	-2.4
3,094,800	-		EFB2_02963	0.74	-2.1
3,094,800	-		EFB2_02963	0.74	-1.8
3,094,800	-		EFB2_02963	0.74	-2.7
3,094,800	-		EFB2_02963	0.74	+1.8
3,094,817	-		EFB2_02963	0.76	-2.7
3,094,818	+		EFB2_02963	0.76	-0.4
3,094,818	+		EFB2_02963	0.76	-2.8
3,094,818	+		EFB2_02963	0.76	-1.0
3,094,819	-		EFB2_02963	0.76	-1.5
3,094,819	-		EFB2_02963	0.76	+1.6
3,094,819	-		EFB2_02963	0.76	+1.3
3,094,879	+		EFB2_02963	0.84	-3.2
3,094,879	+		EFB2_02963	0.84	+1.8
3,094,879	+		EFB2_02963	0.84	-0.4
3,094,880	-		EFB2_02963	0.84	+1.8
3,094,887	+		EFB2_02963	0.85	-0.3
3,094,887	+		EFB2_02963	0.85	-0.4
3,094,887	+		EFB2_02963	0.85	+0.5
3,094,924	+		EFB2_02963	0.89	+0.1
3,094,924	+		EFB2_02963	0.89	-0.1
3,094,925	-		EFB2_02963	0.89	-1.3
3,094,925	-		EFB2_02963	0.89	+1.3
3,094,925	-		EFB2_02963	0.89	+0.8
3,094,930	+				-0.1
3,094,931	-				+2.2
3,094,982	+				+1.5
3,094,982	+				-0.6
3,094,982	+				+0.5
3,094,982	+				-2.2
3,094,982	+				+0.0
3,094,983	-				-0.5
3,094,983	-				-2.6
3,094,983	-				-0.8
3,094,983	-				+1.3
3,094,983	-				+1.8
3,094,983	-				+0.4
3,094,983	-				-2.3
3,094,983	-				-2.2
3,094,987	+				+1.2
3,094,987	+				+1.6
3,094,987	+				+0.0
3,094,988	-				-0.1
3,094,988	-				-0.9
3,094,988	-				+0.5
3,094,988	-				-0.8
3,094,988	-				+0.7
3,094,988	-				-0.7
3,094,988	-				+0.1
3,094,989	+				-0.3
3,094,989	+				+0.4
3,094,989	+				+2.5
3,094,989	+				-0.3
3,094,989	+				-1.9
3,094,989	+				-2.1
3,094,989	+				+0.4
3,094,989	+				+0.3
3,094,989	+				+2.4
3,094,989	+				-0.3
3,094,989	+				-0.4
3,094,989	+				+0.6
3,094,989	+				-0.5
3,094,989	+				+0.2
3,094,989	-				-0.7
3,094,990	-				-0.4
3,094,990	-				+2.5
3,094,990	-				+0.9
3,094,990	-				-1.0
3,094,990	-				+1.6
3,094,990	-				-1.0
3,094,990	-				-1.7
3,094,990	-				-2.4
3,094,996	+				-1.6
3,094,996	+				-3.0
3,094,997	-				-1.9
3,095,044	+				+2.5
3,095,045	-				-1.4
3,095,046	+				+0.4
3,095,046	+				-2.5
3,095,046	+				-1.3
3,095,046	+				-1.4
3,095,046	+				+0.8
3,095,046	+				-0.6
3,095,046	+				+1.5
3,095,046	+				-2.8
3,095,047	-				-0.6
3,095,047	-				+0.5
3,095,047	-				+1.6
3,095,047	-				-1.1
3,095,113	+				-2.3
3,095,114	-				+0.8
3,095,123	+				+1.7
3,095,123	+				+0.1
3,095,123	+				+1.6
3,095,124	-				-0.1
3,095,124	-				+1.7
3,095,124	-				-0.5
3,095,124	-				+0.1
3,095,150	+				+0.1
3,095,150	+				-2.6
3,095,150	+				-0.3
3,095,150	+				-0.3
3,095,151	-				+0.1
3,095,151	-				-1.1
3,095,151	-				+2.5
3,095,151	-				-1.9
3,095,158	+				+0.2
3,095,158	+				+0.1
3,095,158	+				+1.1
3,095,158	+				-3.1
3,095,158	+				+3.5
3,095,158	+				+0.3
3,095,158	+				+1.7
3,095,158	+				+0.9
3,095,158	+				-1.6
3,095,158	+				+2.2
3,095,158	+				-0.5
3,095,158	+				+0.3
3,095,158	+				+1.1
3,095,158	+				+1.4
3,095,158	+				+0.7
3,095,158	+				-1.8
3,095,158	+				+1.8
3,095,159	-				+1.4
3,095,159	-				+0.5
3,095,159	-				-1.6
3,095,159	-				-2.6
3,095,159	-				+2.7
3,095,159	-				-1.5
3,095,159	-				+0.0
3,095,159	-				-0.4
3,095,159	-				-0.5
3,095,159	-				+0.3
3,095,159	-				-1.4
3,095,159	-				+0.4
3,095,159	-				-1.0
3,095,159	-				-0.8
3,095,159	-				-0.3
3,095,159	-				+0.5
3,095,159	-				-0.5
3,095,159	-				-0.2
3,095,160	+				+1.8
3,095,160	+				+0.7
3,095,160	+				+1.2
3,095,160	+				+0.8
3,095,160	+				+0.4
3,095,160	+				+1.5
3,095,160	+				+0.0
3,095,160	+				+0.2
3,095,160	+				+1.0
3,095,160	+				-1.1
3,095,160	+				-2.1
3,095,160	+				-2.6
3,095,161	-				-2.0
3,095,161	-				+1.5
3,095,161	-				-0.3
3,095,161	-				+2.1
3,095,161	-				-0.2
3,095,178	+				-0.4
3,095,180	+				+0.1
3,095,180	+				+0.3
3,095,180	+				+1.5
3,095,180	+				-0.5
3,095,180	+				-1.7
3,095,180	+				+1.3
3,095,180	+				+0.5
3,095,180	+				+0.0
3,095,180	+				+2.1
3,095,180	+				+0.5
3,095,180	+				-0.0
3,095,180	+				+0.4
3,095,180	+				+0.1
3,095,180	+				+1.0
3,095,180	+				-1.8
3,095,180	+				-2.2
3,095,180	+				+1.4
3,095,180	+				+0.6
3,095,180	+				+1.2
3,095,180	+				-0.7
3,095,180	+				+1.0
3,095,181	-				-0.7
3,095,181	-				-2.7
3,095,181	-				-0.5
3,095,181	-				-2.4
3,095,181	-				+1.1
3,095,181	-				-0.3
3,095,181	-				-0.3
3,095,181	-				+0.5
3,095,181	-				-2.4
3,095,181	-				-0.0
3,095,181	-				-0.4
3,095,181	-				+1.2
3,095,181	-				+1.5
3,095,181	-				-0.1
3,095,181	-				-2.2
3,095,181	-				-0.3
3,095,181	-				-0.9
3,095,181	-				-1.6
3,095,181	-				+0.0
3,095,181	-				-2.1
3,095,181	-				+0.4
3,095,181	-				-2.1
3,095,185	+				+0.1
3,095,185	+				+1.8
3,095,185	+				-0.3
3,095,185	+				+1.5
3,095,185	+				-1.9
3,095,186	-				-2.7
3,095,186	-				-1.4
3,095,186	-				-2.0
3,095,186	-				-1.1
3,095,186	-				-1.4
3,095,186	-				+0.9
3,095,187	+				+1.5
3,095,187	+				+1.1
3,095,259	+		EFB2_02964	0.12	-1.0
3,095,260	-		EFB2_02964	0.12	+2.5
3,095,260	-		EFB2_02964	0.12	-0.2
3,095,269	+		EFB2_02964	0.12	+0.9
3,095,269	+		EFB2_02964	0.12	+1.9
3,095,269	+		EFB2_02964	0.12	+1.3
3,095,270	-		EFB2_02964	0.12	+0.3
3,095,270	-		EFB2_02964	0.12	+0.1
3,095,270	-		EFB2_02964	0.12	+1.2
3,095,270	-		EFB2_02964	0.12	+1.3
3,095,270	-		EFB2_02964	0.12	-1.9
3,095,270	-		EFB2_02964	0.12	+0.7
3,095,270	-		EFB2_02964	0.12	-0.1
3,095,270	-		EFB2_02964	0.12	-1.2
3,095,270	-		EFB2_02964	0.12	-2.7
3,095,282	+		EFB2_02964	0.13	+0.5
3,095,282	+		EFB2_02964	0.13	-1.0
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