Strain Fitness in Escherichia fergusonii Becca around EFB2_02503

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,630,824	-		EFB2_02502	0.45	-0.1
2,630,899	+		EFB2_02502	0.50	-0.8
2,630,900	-		EFB2_02502	0.50	-0.4
2,630,908	+		EFB2_02502	0.50	+0.9
2,630,909	-		EFB2_02502	0.50	+2.2
2,630,910	+		EFB2_02502	0.50	-1.4
2,630,910	+		EFB2_02502	0.50	-0.7
2,630,910	+		EFB2_02502	0.50	-1.3
2,630,911	-		EFB2_02502	0.50	+0.2
2,630,911	-		EFB2_02502	0.50	-1.7
2,630,911	-		EFB2_02502	0.50	+0.7
2,630,911	-		EFB2_02502	0.50	-2.8
2,630,934	+		EFB2_02502	0.52	-1.1
2,630,935	-		EFB2_02502	0.52	+0.6
2,630,967	+		EFB2_02502	0.54	+1.6
2,630,968	-		EFB2_02502	0.54	+0.5
2,630,968	-		EFB2_02502	0.54	+1.1
2,630,995	+		EFB2_02502	0.55	-1.2
2,630,995	+		EFB2_02502	0.55	-0.2
2,630,998	+		EFB2_02502	0.55	-1.9
2,631,011	-		EFB2_02502	0.56	+0.2
2,631,029	+		EFB2_02502	0.57	+1.4
2,631,052	-		EFB2_02502	0.59	-0.1
2,631,067	+		EFB2_02502	0.60	+0.2
2,631,067	+		EFB2_02502	0.60	-1.2
2,631,075	+		EFB2_02502	0.60	+2.7
2,631,076	-		EFB2_02502	0.60	+1.8
2,631,082	-		EFB2_02502	0.60	-0.4
2,631,082	-		EFB2_02502	0.60	-0.9
2,631,153	+		EFB2_02502	0.65	-0.5
2,631,153	+		EFB2_02502	0.65	+2.8
2,631,154	-		EFB2_02502	0.65	+2.2
2,631,154	-		EFB2_02502	0.65	-2.4
2,631,166	+		EFB2_02502	0.65	+2.8
2,631,166	+		EFB2_02502	0.65	+0.8
2,631,166	+		EFB2_02502	0.65	+1.0
2,631,167	-		EFB2_02502	0.65	+0.6
2,631,167	-		EFB2_02502	0.65	-0.0
2,631,195	+		EFB2_02502	0.67	-1.0
2,631,195	+		EFB2_02502	0.67	+1.0
2,631,196	-		EFB2_02502	0.67	+0.4
2,631,225	+		EFB2_02502	0.69	-0.3
2,631,229	+		EFB2_02502	0.69	-1.9
2,631,229	+		EFB2_02502	0.69	-0.9
2,631,230	-		EFB2_02502	0.69	+1.3
2,631,230	-		EFB2_02502	0.69	-2.3
2,631,306	+		EFB2_02502	0.74	-0.3
2,631,307	-		EFB2_02502	0.74	+0.4
2,631,345	+		EFB2_02502	0.76	-1.4
2,631,346	-		EFB2_02502	0.76	+2.8
2,631,392	-		EFB2_02502	0.79	-0.6
2,631,392	-		EFB2_02502	0.79	+1.8
2,631,418	-		EFB2_02502	0.80	+1.2
2,631,432	+		EFB2_02502	0.81	+0.9
2,631,432	+		EFB2_02502	0.81	+1.9
2,631,436	+		EFB2_02502	0.81	-0.5
2,631,437	-		EFB2_02502	0.82	+1.1
2,631,437	-		EFB2_02502	0.82	-0.0
2,631,437	-		EFB2_02502	0.82	+0.6
2,631,511	+		EFB2_02502	0.86	+0.5
2,631,511	+		EFB2_02502	0.86	-0.5
2,631,512	-		EFB2_02502	0.86	-2.3
2,631,513	+		EFB2_02502	0.86	+0.3
2,631,513	+		EFB2_02502	0.86	-0.3
2,631,513	+		EFB2_02502	0.86	-2.2
2,631,513	+		EFB2_02502	0.86	-2.4
2,631,514	-		EFB2_02502	0.86	-0.5
2,631,533	-		EFB2_02502	0.87	-0.7
2,631,544	+		EFB2_02502	0.88	+0.6
2,631,544	+		EFB2_02502	0.88	+0.3
2,631,544	+		EFB2_02502	0.88	-1.9
2,631,545	-		EFB2_02502	0.88	+1.0
2,631,545	-		EFB2_02502	0.88	-0.6
2,631,545	-		EFB2_02502	0.88	+1.1
2,631,546	+		EFB2_02502	0.88	+0.7
2,631,546	+		EFB2_02502	0.88	-0.0
2,631,546	+		EFB2_02502	0.88	+1.0
2,631,546	+		EFB2_02502	0.88	-0.7
2,631,547	-		EFB2_02502	0.88	+0.2
2,631,566	+		EFB2_02502	0.89	+1.6
2,631,566	+		EFB2_02502	0.89	-0.9
2,631,566	+		EFB2_02502	0.89	+1.9
2,631,566	+		EFB2_02502	0.89	+0.7
2,631,566	+		EFB2_02502	0.89	-0.0
2,631,567	-		EFB2_02502	0.89	+0.9
2,631,567	-		EFB2_02502	0.89	+0.5
2,631,567	-		EFB2_02502	0.89	-0.3
2,631,567	-		EFB2_02502	0.89	-3.3
2,631,567	-		EFB2_02502	0.89	-0.0
2,631,574	+		EFB2_02502	0.90	-0.2
2,631,574	+		EFB2_02502	0.90	+2.0
2,631,574	+		EFB2_02502	0.90	-0.3
2,631,575	-		EFB2_02502	0.90	-1.6
2,631,575	-		EFB2_02502	0.90	+0.3
2,631,575	-		EFB2_02502	0.90	-0.2
2,631,575	-		EFB2_02502	0.90	-1.2
2,631,590	+				+0.9
2,631,653	+				+0.5
2,631,717	+				-0.3
2,631,717	+				+1.2
2,631,745	+				-0.3
2,631,746	-				+0.2
2,631,749	+				-2.0
2,631,749	+				-2.9
2,631,750	-				-0.2
2,631,794	+				-0.5
2,631,795	-				+0.0
2,631,834	+				+0.5
2,631,851	-				+1.3
2,631,934	+		EFB2_02503	0.12	+1.2
2,631,934	+		EFB2_02503	0.12	+1.3
2,631,934	+		EFB2_02503	0.12	+0.1
2,631,934	+		EFB2_02503	0.12	-0.0
2,631,934	+		EFB2_02503	0.12	-1.5
2,631,935	-		EFB2_02503	0.12	+1.3
2,631,935	-		EFB2_02503	0.12	+2.6
2,631,936	+		EFB2_02503	0.12	-1.1
2,631,937	-		EFB2_02503	0.12	-1.0
2,631,961	+		EFB2_02503	0.14	+2.2
2,631,962	-		EFB2_02503	0.14	+0.3
2,631,962	-		EFB2_02503	0.14	-1.0
2,632,020	+		EFB2_02503	0.19	+0.8
2,632,028	-		EFB2_02503	0.20	-2.2
2,632,040	-		EFB2_02503	0.21	+0.9
2,632,040	-		EFB2_02503	0.21	+1.5
2,632,070	+		EFB2_02503	0.23	+2.6
2,632,070	+		EFB2_02503	0.23	+1.1
2,632,096	-		EFB2_02503	0.26	-0.0
2,632,140	+		EFB2_02503	0.29	-0.4
2,632,141	-		EFB2_02503	0.30	-0.8
2,632,167	-		EFB2_02503	0.32	-0.5
2,632,167	-		EFB2_02503	0.32	-2.9
2,632,189	-		EFB2_02503	0.34	-1.1
2,632,198	-		EFB2_02503	0.34	-2.0
2,632,254	-		EFB2_02503	0.39	+1.4
2,632,264	-		EFB2_02503	0.40	-0.0
2,632,264	-		EFB2_02503	0.40	-1.2
2,632,298	-		EFB2_02503	0.43	-0.1
2,632,344	+		EFB2_02503	0.47	-1.4
2,632,401	+		EFB2_02503	0.52	-0.8
2,632,401	+		EFB2_02503	0.52	-1.7
2,632,401	+		EFB2_02503	0.52	+2.2
2,632,461	+		EFB2_02503	0.57	-1.4
2,632,461	+		EFB2_02503	0.57	+2.4
2,632,462	-		EFB2_02503	0.57	-0.7
2,632,489	-		EFB2_02503	0.60	+1.1
2,632,561	-		EFB2_02503	0.66	+0.9
2,632,593	+		EFB2_02503	0.69	+0.7
2,632,655	-		EFB2_02503	0.74	-1.3
2,632,757	-		EFB2_02503	0.83	-1.5
2,632,758	+		EFB2_02503	0.83	+2.8
2,632,759	-		EFB2_02503	0.83	-1.6
2,632,759	-		EFB2_02503	0.83	-1.5
2,632,764	+		EFB2_02503	0.83	-1.6
2,632,795	-		EFB2_02503	0.86	-0.0
2,632,797	+		EFB2_02503	0.86	-1.1
2,632,800	+		EFB2_02503	0.86	-0.8
2,632,806	-		EFB2_02503	0.87	-0.8
2,632,865	+				-1.6
2,632,866	-				-1.7
2,632,866	-				-0.8
2,632,866	-				-0.7
2,632,870	+				+0.0
2,632,870	+				+1.2
2,632,870	+				-0.9
2,632,870	+				+0.6
2,632,870	+				-1.5
2,632,870	+				+2.2
2,632,871	-				-0.9
2,632,872	+				-1.4
2,632,872	+				-1.6
2,632,872	+				-0.5
2,632,872	+				-1.0
2,632,873	-				-1.5
2,632,873	-				+0.7
2,632,892	+				-1.0
2,632,892	+				+1.2
2,632,897	-				-1.5
2,632,907	+				+1.3
2,632,950	+				-0.9
2,632,954	+				+0.8
2,632,957	+				-1.5
2,632,994	+				+0.2
2,632,995	-				+2.6
2,632,995	-				-1.5
2,633,002	+				-2.3
2,633,019	+				-0.4
2,633,074	+				-1.0
2,633,078	+				-1.1
2,633,078	+				+0.3
2,633,078	+				+0.2
2,633,079	-				-0.8
2,633,079	-				-0.7
2,633,079	-				+0.6
2,633,081	+				-1.2
2,633,082	-				+0.5
2,633,092	+				-0.8
2,633,092	+				-2.5
2,633,092	+				+0.9
2,633,093	-				+0.8
2,633,121	-				-0.5
2,633,136	-				+1.8
2,633,136	-				-1.0
2,633,222	+				+0.1
2,633,240	+				+1.7
2,633,241	-				+0.5
2,633,241	-				+1.6
2,633,241	-				-1.2
2,633,267	+				+1.8
2,633,267	+				-0.7
2,633,267	+				+2.0
2,633,267	+				+1.8
2,633,267	+				+0.2
2,633,268	-				-0.1
2,633,268	-				-0.7
2,633,268	-				-1.2
2,633,271	-				-1.5
2,633,297	+				-0.5
2,633,297	+				+2.2
2,633,333	+		EFB2_02504	0.12	-1.1
2,633,334	-		EFB2_02504	0.12	+0.2
2,633,334	-		EFB2_02504	0.12	+0.1
2,633,418	+		EFB2_02504	0.20	-0.5
2,633,418	+		EFB2_02504	0.20	-1.4
2,633,418	+		EFB2_02504	0.20	-0.5
2,633,418	+		EFB2_02504	0.20	+0.5
2,633,418	+		EFB2_02504	0.20	+3.7
2,633,418	+		EFB2_02504	0.20	-0.8
2,633,418	+		EFB2_02504	0.20	+0.5
2,633,418	+		EFB2_02504	0.20	+1.3
2,633,419	-		EFB2_02504	0.20	-0.9
2,633,419	-		EFB2_02504	0.20	-0.3
2,633,419	-		EFB2_02504	0.20	+1.2
2,633,419	-		EFB2_02504	0.20	-0.5
2,633,419	-		EFB2_02504	0.20	-1.1
2,633,419	-		EFB2_02504	0.20	-1.0
2,633,419	-		EFB2_02504	0.20	+0.6
2,633,419	-		EFB2_02504	0.20	+0.8
2,633,430	+		EFB2_02504	0.21	-1.0
2,633,431	-		EFB2_02504	0.21	-0.2
2,633,481	-		EFB2_02504	0.26	-0.4
2,633,481	-		EFB2_02504	0.26	+1.5
2,633,481	-		EFB2_02504	0.26	-1.0
2,633,555	+		EFB2_02504	0.34	+1.8
2,633,588	+		EFB2_02504	0.37	-1.2
2,633,589	-		EFB2_02504	0.37	-1.0
2,633,595	+		EFB2_02504	0.38	-0.8
2,633,599	+		EFB2_02504	0.38	+0.1
2,633,599	+		EFB2_02504	0.38	-2.0
2,633,599	+		EFB2_02504	0.38	-1.8
2,633,599	+		EFB2_02504	0.38	+1.1
2,633,599	+		EFB2_02504	0.38	-0.5
2,633,599	+		EFB2_02504	0.38	-1.8
2,633,599	+		EFB2_02504	0.38	+0.5
2,633,599	+		EFB2_02504	0.38	-0.0
2,633,599	+		EFB2_02504	0.38	-2.2
2,633,600	-		EFB2_02504	0.38	-0.1
2,633,600	-		EFB2_02504	0.38	+2.2
2,633,606	+		EFB2_02504	0.39	+2.8
2,633,607	-		EFB2_02504	0.39	-1.1
2,633,607	-		EFB2_02504	0.39	-1.1
2,633,607	-		EFB2_02504	0.39	+4.0
2,633,607	-		EFB2_02504	0.39	-0.7
2,633,639	+		EFB2_02504	0.42	-2.4
2,633,640	-		EFB2_02504	0.42	-0.4
2,633,647	+		EFB2_02504	0.43	+1.2
2,633,648	-		EFB2_02504	0.43	+0.3
2,633,648	-		EFB2_02504	0.43	+0.1
2,633,675	+		EFB2_02504	0.46	-0.7
2,633,680	+		EFB2_02504	0.46	-0.8
2,633,681	-		EFB2_02504	0.46	+2.0
2,633,728	-		EFB2_02504	0.51	+0.4
2,633,729	+		EFB2_02504	0.51	-1.4
2,633,730	-		EFB2_02504	0.51	-0.9
2,633,730	-		EFB2_02504	0.51	-0.2
2,633,747	+		EFB2_02504	0.53	-2.0
2,633,748	-		EFB2_02504	0.53	+0.4
2,633,804	-		EFB2_02504	0.58	+0.2
2,633,804	-		EFB2_02504	0.58	+2.0
2,633,804	-		EFB2_02504	0.58	-0.2
2,633,804	-		EFB2_02504	0.58	-1.1
2,633,810	+		EFB2_02504	0.59	+0.2
2,633,883	-		EFB2_02504	0.66	-2.4
2,633,903	+		EFB2_02504	0.68	+0.3
2,633,904	-		EFB2_02504	0.68	-0.8