Strain Fitness in Escherichia fergusonii Becca around EFB2_02100

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,251,302	+		EFB2_02099	0.52	+1.7
2,251,302	+		EFB2_02099	0.52	-1.4
2,251,302	+		EFB2_02099	0.52	+0.4
2,251,302	+		EFB2_02099	0.52	-1.6
2,251,303	-		EFB2_02099	0.52	+0.7
2,251,303	-		EFB2_02099	0.52	+0.6
2,251,303	-		EFB2_02099	0.52	-1.3
2,251,303	-		EFB2_02099	0.52	+1.1
2,251,303	-		EFB2_02099	0.52	-1.5
2,251,320	+		EFB2_02099	0.53	+0.7
2,251,320	+		EFB2_02099	0.53	-0.5
2,251,320	+		EFB2_02099	0.53	+0.3
2,251,321	-		EFB2_02099	0.53	-0.0
2,251,353	+		EFB2_02099	0.55	+1.9
2,251,382	+		EFB2_02099	0.56	+0.2
2,251,382	+		EFB2_02099	0.56	-0.7
2,251,382	+		EFB2_02099	0.56	+0.8
2,251,382	+		EFB2_02099	0.56	-2.1
2,251,382	+		EFB2_02099	0.56	-0.8
2,251,383	-		EFB2_02099	0.56	-0.4
2,251,383	-		EFB2_02099	0.56	+0.7
2,251,383	-		EFB2_02099	0.56	-2.2
2,251,383	-		EFB2_02099	0.56	-1.4
2,251,383	-		EFB2_02099	0.56	-1.8
2,251,383	-		EFB2_02099	0.56	+0.7
2,251,383	-		EFB2_02099	0.56	+1.2
2,251,401	-		EFB2_02099	0.57	+1.4
2,251,423	+		EFB2_02099	0.58	-0.6
2,251,423	+		EFB2_02099	0.58	+3.7
2,251,423	+		EFB2_02099	0.58	+1.0
2,251,423	+		EFB2_02099	0.58	-1.9
2,251,423	+		EFB2_02099	0.58	+1.1
2,251,423	+		EFB2_02099	0.58	+0.1
2,251,424	-		EFB2_02099	0.58	+0.4
2,251,426	+		EFB2_02099	0.58	+0.6
2,251,426	+		EFB2_02099	0.58	+0.7
2,251,464	+		EFB2_02099	0.60	+0.4
2,251,527	+		EFB2_02099	0.63	+0.4
2,251,527	+		EFB2_02099	0.63	-1.6
2,251,527	+		EFB2_02099	0.63	+0.4
2,251,527	+		EFB2_02099	0.63	-0.5
2,251,572	+		EFB2_02099	0.65	+0.9
2,251,572	+		EFB2_02099	0.65	+1.2
2,251,572	+		EFB2_02099	0.65	+0.7
2,251,572	+		EFB2_02099	0.65	+0.1
2,251,572	+		EFB2_02099	0.65	-2.2
2,251,572	+		EFB2_02099	0.65	-2.1
2,251,572	+		EFB2_02099	0.65	+1.1
2,251,572	+		EFB2_02099	0.65	+0.4
2,251,572	+		EFB2_02099	0.65	+1.5
2,251,572	+		EFB2_02099	0.65	+0.1
2,251,573	-		EFB2_02099	0.65	-1.4
2,251,573	-		EFB2_02099	0.65	+0.8
2,251,573	-		EFB2_02099	0.65	+1.2
2,251,573	-		EFB2_02099	0.65	-0.5
2,251,587	+		EFB2_02099	0.66	+0.9
2,251,598	+		EFB2_02099	0.67	+0.9
2,251,598	+		EFB2_02099	0.67	+1.1
2,251,598	+		EFB2_02099	0.67	-0.6
2,251,599	-		EFB2_02099	0.67	+0.2
2,251,599	-		EFB2_02099	0.67	+0.3
2,251,599	-		EFB2_02099	0.67	+1.1
2,251,599	-		EFB2_02099	0.67	+2.5
2,251,599	-		EFB2_02099	0.67	+1.1
2,251,599	-		EFB2_02099	0.67	-0.1
2,251,599	-		EFB2_02099	0.67	+0.7
2,251,599	-		EFB2_02099	0.67	+0.0
2,251,619	+		EFB2_02099	0.68	-0.2
2,251,653	+		EFB2_02099	0.69	-0.7
2,251,701	+		EFB2_02099	0.72	-2.3
2,251,701	+		EFB2_02099	0.72	-0.8
2,251,702	-		EFB2_02099	0.72	-0.8
2,251,739	+		EFB2_02099	0.73	+0.8
2,251,747	-		EFB2_02099	0.74	+0.8
2,251,747	-		EFB2_02099	0.74	+1.1
2,251,771	+		EFB2_02099	0.75	-0.1
2,251,771	+		EFB2_02099	0.75	-0.6
2,251,782	+		EFB2_02099	0.76	-1.0
2,251,803	+		EFB2_02099	0.77	+3.2
2,251,803	+		EFB2_02099	0.77	-1.4
2,251,829	+		EFB2_02099	0.78	+2.4
2,251,830	-		EFB2_02099	0.78	-0.8
2,251,830	-		EFB2_02099	0.78	-0.3
2,251,830	-		EFB2_02099	0.78	-1.1
2,251,830	-		EFB2_02099	0.78	+0.7
2,251,891	+		EFB2_02099	0.81	+0.7
2,251,892	-		EFB2_02099	0.81	+0.8
2,251,909	+		EFB2_02099	0.82	+0.1
2,251,909	+		EFB2_02099	0.82	+0.5
2,251,909	+		EFB2_02099	0.82	+0.5
2,251,909	+		EFB2_02099	0.82	+0.8
2,251,909	+		EFB2_02099	0.82	+0.4
2,251,909	+		EFB2_02099	0.82	+0.9
2,251,910	-		EFB2_02099	0.82	+1.5
2,251,910	-		EFB2_02099	0.82	-0.8
2,251,910	-		EFB2_02099	0.82	+0.7
2,251,910	-		EFB2_02099	0.82	+2.2
2,251,940	+		EFB2_02099	0.83	+1.5
2,251,940	+		EFB2_02099	0.83	-0.3
2,251,941	-		EFB2_02099	0.83	-0.9
2,251,989	+		EFB2_02099	0.86	-0.9
2,251,989	+		EFB2_02099	0.86	+2.7
2,251,989	+		EFB2_02099	0.86	-0.9
2,251,990	-		EFB2_02099	0.86	-0.2
2,251,990	-		EFB2_02099	0.86	-0.5
2,251,990	-		EFB2_02099	0.86	+1.5
2,251,995	+		EFB2_02099	0.86	+2.0
2,251,995	+		EFB2_02099	0.86	+0.3
2,251,995	+		EFB2_02099	0.86	+1.3
2,251,995	+		EFB2_02099	0.86	-0.8
2,251,995	+		EFB2_02099	0.86	+1.6
2,251,995	+		EFB2_02099	0.86	-0.8
2,251,995	+		EFB2_02099	0.86	+0.7
2,251,996	-		EFB2_02099	0.86	-1.5
2,251,996	-		EFB2_02099	0.86	+1.7
2,251,996	-		EFB2_02099	0.86	+0.2
2,251,996	-		EFB2_02099	0.86	-1.3
2,251,996	-		EFB2_02099	0.86	+0.1
2,251,996	-		EFB2_02099	0.86	+1.7
2,251,996	-		EFB2_02099	0.86	-0.5
2,251,996	-		EFB2_02099	0.86	+1.4
2,251,996	-		EFB2_02099	0.86	+0.3
2,251,997	+		EFB2_02099	0.86	-1.0
2,251,997	+		EFB2_02099	0.86	+2.8
2,251,997	+		EFB2_02099	0.86	+0.6
2,251,997	+		EFB2_02099	0.86	+0.9
2,251,997	+		EFB2_02099	0.86	-1.7
2,251,997	+		EFB2_02099	0.86	+1.5
2,251,997	+		EFB2_02099	0.86	+1.7
2,251,998	-		EFB2_02099	0.86	-0.1
2,251,998	-		EFB2_02099	0.86	+0.5
2,251,998	-		EFB2_02099	0.86	+3.3
2,251,998	-		EFB2_02099	0.86	-0.3
2,251,998	-		EFB2_02099	0.86	-0.1
2,252,007	+		EFB2_02099	0.86	-0.3
2,252,007	+		EFB2_02099	0.86	+1.7
2,252,007	+		EFB2_02099	0.86	+2.1
2,252,007	+		EFB2_02099	0.86	+0.6
2,252,008	-		EFB2_02099	0.87	+0.4
2,252,008	-		EFB2_02099	0.87	+1.8
2,252,008	-		EFB2_02099	0.87	+0.3
2,252,016	+		EFB2_02099	0.87	-1.1
2,252,017	-		EFB2_02099	0.87	+0.5
2,252,050	+		EFB2_02099	0.89	+0.9
2,252,050	+		EFB2_02099	0.89	-2.2
2,252,068	+		EFB2_02099	0.89	+0.1
2,252,089	-				+0.8
2,252,149	+				-1.2
2,252,149	+				-1.6
2,252,149	+				-1.6
2,252,149	+				-1.2
2,252,149	+				-0.5
2,252,150	-				+0.4
2,252,150	-				+2.2
2,252,186	+				-3.1
2,252,201	+				-1.3
2,252,201	+				+0.9
2,252,201	+				-1.7
2,252,208	+				-1.2
2,252,208	+				+0.5
2,252,209	-				+1.5
2,252,209	-				+2.7
2,252,229	+				+1.2
2,252,229	+				-0.1
2,252,230	-				+0.3
2,252,283	+				-0.1
2,252,283	+				-2.3
2,252,283	+				-2.6
2,252,284	-				+0.0
2,252,284	-				+3.1
2,252,287	+				-2.3
2,252,288	-				-1.2
2,252,288	-				+0.6
2,252,298	+				+0.5
2,252,298	+				-1.0
2,252,298	+				-1.0
2,252,344	+				+1.1
2,252,345	-				-1.9
2,252,348	-				-1.0
2,252,410	-		EFB2_02100	0.19	-2.2
2,252,410	-		EFB2_02100	0.19	-0.4
2,252,494	+		EFB2_02100	0.32	+1.1
2,252,495	-		EFB2_02100	0.32	+0.7
2,252,495	-		EFB2_02100	0.32	+0.9
2,252,495	-		EFB2_02100	0.32	+1.7
2,252,495	-		EFB2_02100	0.32	+0.1
2,252,495	-		EFB2_02100	0.32	-0.1
2,252,495	-		EFB2_02100	0.32	-1.3
2,252,495	-		EFB2_02100	0.32	+0.2
2,252,498	-		EFB2_02100	0.33	-1.0
2,252,521	+		EFB2_02100	0.36	-1.0
2,252,521	+		EFB2_02100	0.36	-1.0
2,252,521	+		EFB2_02100	0.36	+3.2
2,252,521	+		EFB2_02100	0.36	+0.4
2,252,522	-		EFB2_02100	0.36	-0.2
2,252,522	-		EFB2_02100	0.36	+0.8
2,252,522	-		EFB2_02100	0.36	+0.6
2,252,522	-		EFB2_02100	0.36	-0.3
2,252,522	-		EFB2_02100	0.36	+0.5
2,252,522	-		EFB2_02100	0.36	-1.1
2,252,522	-		EFB2_02100	0.36	-1.3
2,252,522	-		EFB2_02100	0.36	+0.6
2,252,523	+		EFB2_02100	0.36	-1.9
2,252,523	+		EFB2_02100	0.36	-1.3
2,252,523	+		EFB2_02100	0.36	+1.7
2,252,523	+		EFB2_02100	0.36	-1.2
2,252,523	+		EFB2_02100	0.36	-0.5
2,252,523	+		EFB2_02100	0.36	+0.1
2,252,524	-		EFB2_02100	0.37	+0.3
2,252,524	-		EFB2_02100	0.37	+0.4
2,252,524	-		EFB2_02100	0.37	+0.7
2,252,524	-		EFB2_02100	0.37	+1.7
2,252,524	-		EFB2_02100	0.37	+0.7
2,252,524	-		EFB2_02100	0.37	+1.1
2,252,524	-		EFB2_02100	0.37	-0.5
2,252,524	-		EFB2_02100	0.37	+0.3
2,252,524	-		EFB2_02100	0.37	-2.0
2,252,524	-		EFB2_02100	0.37	-0.1
2,252,524	-		EFB2_02100	0.37	-0.9
2,252,524	-		EFB2_02100	0.37	+1.5
2,252,524	-		EFB2_02100	0.37	+0.2
2,252,524	-		EFB2_02100	0.37	+0.5
2,252,524	-		EFB2_02100	0.37	+0.1
2,252,524	-		EFB2_02100	0.37	+0.6
2,252,524	-		EFB2_02100	0.37	+0.6
2,252,524	-		EFB2_02100	0.37	-2.3
2,252,524	-		EFB2_02100	0.37	+0.2
2,252,524	-		EFB2_02100	0.37	+0.4
2,252,532	+		EFB2_02100	0.38	+2.2
2,252,532	+		EFB2_02100	0.38	+1.5
2,252,532	+		EFB2_02100	0.38	-2.3
2,252,532	+		EFB2_02100	0.38	+0.5
2,252,532	+		EFB2_02100	0.38	+0.2
2,252,532	+		EFB2_02100	0.38	-0.1
2,252,532	+		EFB2_02100	0.38	-2.7
2,252,532	+		EFB2_02100	0.38	+2.3
2,252,533	-		EFB2_02100	0.38	+1.1
2,252,533	-		EFB2_02100	0.38	+2.4
2,252,533	-		EFB2_02100	0.38	-1.7
2,252,533	-		EFB2_02100	0.38	+4.1
2,252,533	-		EFB2_02100	0.38	+0.7
2,252,533	-		EFB2_02100	0.38	-1.9
2,252,533	-		EFB2_02100	0.38	-0.5
2,252,533	-		EFB2_02100	0.38	+0.8
2,252,533	-		EFB2_02100	0.38	+1.2
2,252,533	-		EFB2_02100	0.38	-0.4
2,252,533	-		EFB2_02100	0.38	-3.4
2,252,570	+		EFB2_02100	0.43	-1.1
2,252,570	+		EFB2_02100	0.43	-1.2
2,252,570	+		EFB2_02100	0.43	-0.1
2,252,570	+		EFB2_02100	0.43	-2.0
2,252,571	-		EFB2_02100	0.44	-0.3
2,252,571	-		EFB2_02100	0.44	-0.3
2,252,590	+		EFB2_02100	0.46	+0.7
2,252,590	+		EFB2_02100	0.46	-1.1
2,252,590	+		EFB2_02100	0.46	+4.3
2,252,590	+		EFB2_02100	0.46	+0.4
2,252,590	+		EFB2_02100	0.46	+0.7
2,252,590	+		EFB2_02100	0.46	+0.7
2,252,590	+		EFB2_02100	0.46	+0.5
2,252,591	-		EFB2_02100	0.47	-0.1
2,252,591	-		EFB2_02100	0.47	+1.0
2,252,591	-		EFB2_02100	0.47	+2.2
2,252,591	-		EFB2_02100	0.47	-0.6
2,252,591	-		EFB2_02100	0.47	-0.8
2,252,591	-		EFB2_02100	0.47	-0.0
2,252,591	-		EFB2_02100	0.47	+0.2
2,252,591	-		EFB2_02100	0.47	+1.4
2,252,591	-		EFB2_02100	0.47	-1.3
2,252,592	+		EFB2_02100	0.47	-1.5
2,252,593	-		EFB2_02100	0.47	-2.5
2,252,593	-		EFB2_02100	0.47	+0.0
2,252,593	-		EFB2_02100	0.47	-1.9
2,252,593	-		EFB2_02100	0.47	-1.0
2,252,593	-		EFB2_02100	0.47	-0.1
2,252,593	-		EFB2_02100	0.47	-2.5
2,252,593	-		EFB2_02100	0.47	-1.6
2,252,593	-		EFB2_02100	0.47	+1.1
2,252,594	+		EFB2_02100	0.47	+2.0
2,252,594	+		EFB2_02100	0.47	+0.7
2,252,594	+		EFB2_02100	0.47	+2.4
2,252,594	+		EFB2_02100	0.47	+0.4
2,252,594	+		EFB2_02100	0.47	+0.5
2,252,595	-		EFB2_02100	0.47	-1.6
2,252,595	-		EFB2_02100	0.47	-1.3
2,252,595	-		EFB2_02100	0.47	-1.2
2,252,595	-		EFB2_02100	0.47	-1.1
2,252,602	+		EFB2_02100	0.48	-1.6
2,252,603	-		EFB2_02100	0.48	+1.3
2,252,603	-		EFB2_02100	0.48	+0.6
2,252,603	-		EFB2_02100	0.48	-2.5
2,252,610	+		EFB2_02100	0.49	-1.2
2,252,610	+		EFB2_02100	0.49	+0.8
2,252,610	+		EFB2_02100	0.49	-0.4
2,252,611	-		EFB2_02100	0.50	+5.7
2,252,611	-		EFB2_02100	0.50	-1.6
2,252,611	-		EFB2_02100	0.50	+2.1
2,252,611	-		EFB2_02100	0.50	+0.2
2,252,611	-		EFB2_02100	0.50	-0.3
2,252,647	+		EFB2_02100	0.55	-0.3
2,252,648	-		EFB2_02100	0.55	-1.1
2,252,648	-		EFB2_02100	0.55	-1.4
2,252,648	-		EFB2_02100	0.55	-2.3
2,252,682	-		EFB2_02100	0.60	+0.4
2,252,705	-		EFB2_02100	0.64	+1.5
2,252,715	+		EFB2_02100	0.65	+0.8
2,252,715	+		EFB2_02100	0.65	-1.3
2,252,715	+		EFB2_02100	0.65	-1.2
2,252,715	+		EFB2_02100	0.65	-1.2
2,252,715	+		EFB2_02100	0.65	-0.1
2,252,715	+		EFB2_02100	0.65	-0.9
2,252,715	+		EFB2_02100	0.65	+2.5
2,252,716	-		EFB2_02100	0.65	+1.9
2,252,716	-		EFB2_02100	0.65	+1.2
2,252,716	-		EFB2_02100	0.65	-0.9
2,252,716	-		EFB2_02100	0.65	+0.0
2,252,716	-		EFB2_02100	0.65	-1.6
2,252,716	-		EFB2_02100	0.65	-1.0
2,252,716	-		EFB2_02100	0.65	+1.6
2,252,716	-		EFB2_02100	0.65	+1.8
2,252,716	-		EFB2_02100	0.65	-1.7
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