Strain Fitness in Escherichia fergusonii Becca around EFB2_01443

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,510,714	+				-3.2
1,510,745	+		EFB2_01442	0.11	-0.7
1,510,745	+		EFB2_01442	0.11	+0.5
1,510,745	+		EFB2_01442	0.11	-0.7
1,510,745	+		EFB2_01442	0.11	+0.2
1,510,745	+		EFB2_01442	0.11	-2.3
1,510,745	+		EFB2_01442	0.11	-0.0
1,510,745	+		EFB2_01442	0.11	+0.1
1,510,745	+		EFB2_01442	0.11	-0.5
1,510,745	+		EFB2_01442	0.11	+0.5
1,510,745	+		EFB2_01442	0.11	+0.1
1,510,745	+		EFB2_01442	0.11	-1.6
1,510,746	-		EFB2_01442	0.11	+1.3
1,510,746	-		EFB2_01442	0.11	+0.6
1,510,746	-		EFB2_01442	0.11	-1.9
1,510,746	-		EFB2_01442	0.11	-0.1
1,510,746	-		EFB2_01442	0.11	+1.4
1,510,746	-		EFB2_01442	0.11	+0.2
1,510,765	+		EFB2_01442	0.13	-0.3
1,510,784	+		EFB2_01442	0.15	-2.4
1,510,784	+		EFB2_01442	0.15	+0.1
1,510,784	+		EFB2_01442	0.15	-0.1
1,510,785	-		EFB2_01442	0.15	-0.5
1,510,785	-		EFB2_01442	0.15	-1.3
1,510,843	+		EFB2_01442	0.21	-2.4
1,510,843	+		EFB2_01442	0.21	+0.4
1,510,843	+		EFB2_01442	0.21	-0.1
1,510,862	+		EFB2_01442	0.23	+1.9
1,510,862	+		EFB2_01442	0.23	-0.8
1,510,862	+		EFB2_01442	0.23	-0.8
1,510,862	+		EFB2_01442	0.23	-1.3
1,510,862	+		EFB2_01442	0.23	-1.4
1,510,862	+		EFB2_01442	0.23	+1.2
1,510,863	-		EFB2_01442	0.23	-1.5
1,510,863	-		EFB2_01442	0.23	+0.8
1,510,863	-		EFB2_01442	0.23	-0.4
1,510,863	-		EFB2_01442	0.23	+1.3
1,511,016	+		EFB2_01442	0.37	+0.0
1,511,016	+		EFB2_01442	0.37	-2.5
1,511,016	+		EFB2_01442	0.37	-2.8
1,511,016	+		EFB2_01442	0.37	-2.4
1,511,016	+		EFB2_01442	0.37	+1.5
1,511,016	+		EFB2_01442	0.37	+1.0
1,511,016	+		EFB2_01442	0.37	+0.3
1,511,017	-		EFB2_01442	0.37	+0.5
1,511,017	-		EFB2_01442	0.37	-0.0
1,511,017	-		EFB2_01442	0.37	-1.4
1,511,017	-		EFB2_01442	0.37	-0.0
1,511,017	-		EFB2_01442	0.37	-0.4
1,511,017	-		EFB2_01442	0.37	+0.9
1,511,017	-		EFB2_01442	0.37	-0.6
1,511,017	-		EFB2_01442	0.37	-0.3
1,511,017	-		EFB2_01442	0.37	+0.6
1,511,017	-		EFB2_01442	0.37	-1.7
1,511,020	+		EFB2_01442	0.38	+0.5
1,511,020	+		EFB2_01442	0.38	-0.1
1,511,020	+		EFB2_01442	0.38	-0.7
1,511,020	+		EFB2_01442	0.38	+1.1
1,511,020	+		EFB2_01442	0.38	-0.2
1,511,021	-		EFB2_01442	0.38	+1.6
1,511,021	-		EFB2_01442	0.38	-0.6
1,511,033	+		EFB2_01442	0.39	+1.6
1,511,033	+		EFB2_01442	0.39	+0.9
1,511,033	+		EFB2_01442	0.39	-2.8
1,511,034	-		EFB2_01442	0.39	+1.1
1,511,049	+		EFB2_01442	0.40	-1.4
1,511,049	+		EFB2_01442	0.40	+0.3
1,511,049	+		EFB2_01442	0.40	+0.2
1,511,049	+		EFB2_01442	0.40	-1.7
1,511,049	+		EFB2_01442	0.40	+1.2
1,511,050	-		EFB2_01442	0.40	-2.0
1,511,095	+		EFB2_01442	0.45	+1.3
1,511,109	+		EFB2_01442	0.46	+2.2
1,511,112	+		EFB2_01442	0.46	+1.5
1,511,112	+		EFB2_01442	0.46	-0.7
1,511,112	+		EFB2_01442	0.46	-1.6
1,511,112	+		EFB2_01442	0.46	+0.3
1,511,112	+		EFB2_01442	0.46	+0.4
1,511,112	+		EFB2_01442	0.46	+0.2
1,511,112	+		EFB2_01442	0.46	-1.5
1,511,112	+		EFB2_01442	0.46	+0.7
1,511,112	+		EFB2_01442	0.46	+0.3
1,511,112	+		EFB2_01442	0.46	+0.4
1,511,112	+		EFB2_01442	0.46	-0.2
1,511,112	+		EFB2_01442	0.46	-1.3
1,511,112	+		EFB2_01442	0.46	-0.3
1,511,112	+		EFB2_01442	0.46	-0.8
1,511,112	+		EFB2_01442	0.46	+0.2
1,511,112	+		EFB2_01442	0.46	-1.1
1,511,112	+		EFB2_01442	0.46	+0.1
1,511,112	+		EFB2_01442	0.46	-0.7
1,511,112	+		EFB2_01442	0.46	-0.1
1,511,112	+		EFB2_01442	0.46	-1.4
1,511,112	+		EFB2_01442	0.46	+0.3
1,511,112	+		EFB2_01442	0.46	-0.4
1,511,112	+		EFB2_01442	0.46	-1.5
1,511,112	+		EFB2_01442	0.46	+0.5
1,511,112	+		EFB2_01442	0.46	+0.1
1,511,112	+		EFB2_01442	0.46	-3.2
1,511,112	+		EFB2_01442	0.46	+1.6
1,511,112	+		EFB2_01442	0.46	+0.1
1,511,112	+		EFB2_01442	0.46	+0.7
1,511,112	+		EFB2_01442	0.46	-2.1
1,511,112	+		EFB2_01442	0.46	-0.1
1,511,112	+		EFB2_01442	0.46	+0.5
1,511,112	+		EFB2_01442	0.46	+0.8
1,511,112	+		EFB2_01442	0.46	+0.6
1,511,112	+		EFB2_01442	0.46	+2.0
1,511,112	+		EFB2_01442	0.46	+0.5
1,511,112	+		EFB2_01442	0.46	-1.3
1,511,112	+		EFB2_01442	0.46	-0.9
1,511,112	+		EFB2_01442	0.46	+0.8
1,511,112	+		EFB2_01442	0.46	-1.0
1,511,112	+		EFB2_01442	0.46	-0.6
1,511,112	+		EFB2_01442	0.46	-1.3
1,511,112	+		EFB2_01442	0.46	+0.7
1,511,112	+		EFB2_01442	0.46	-0.9
1,511,112	+		EFB2_01442	0.46	-2.1
1,511,112	+		EFB2_01442	0.46	+0.8
1,511,112	+		EFB2_01442	0.46	+0.3
1,511,112	+		EFB2_01442	0.46	-2.1
1,511,112	+		EFB2_01442	0.46	-1.5
1,511,112	+		EFB2_01442	0.46	-1.7
1,511,112	+		EFB2_01442	0.46	+1.0
1,511,113	-		EFB2_01442	0.46	-0.5
1,511,113	-		EFB2_01442	0.46	+0.4
1,511,113	-		EFB2_01442	0.46	+0.9
1,511,113	-		EFB2_01442	0.46	-0.5
1,511,113	-		EFB2_01442	0.46	-2.3
1,511,113	-		EFB2_01442	0.46	+0.2
1,511,113	-		EFB2_01442	0.46	+1.5
1,511,113	-		EFB2_01442	0.46	-0.0
1,511,113	-		EFB2_01442	0.46	-1.8
1,511,113	-		EFB2_01442	0.46	-2.2
1,511,113	-		EFB2_01442	0.46	+0.9
1,511,113	-		EFB2_01442	0.46	+0.4
1,511,113	-		EFB2_01442	0.46	-2.8
1,511,113	-		EFB2_01442	0.46	-0.5
1,511,113	-		EFB2_01442	0.46	-2.6
1,511,113	-		EFB2_01442	0.46	+1.4
1,511,113	-		EFB2_01442	0.46	-2.9
1,511,113	-		EFB2_01442	0.46	-0.6
1,511,113	-		EFB2_01442	0.46	+1.2
1,511,113	-		EFB2_01442	0.46	-0.1
1,511,113	-		EFB2_01442	0.46	+0.1
1,511,113	-		EFB2_01442	0.46	+0.5
1,511,113	-		EFB2_01442	0.46	-0.7
1,511,113	-		EFB2_01442	0.46	-1.3
1,511,113	-		EFB2_01442	0.46	+0.4
1,511,113	-		EFB2_01442	0.46	+0.9
1,511,113	-		EFB2_01442	0.46	+1.0
1,511,113	-		EFB2_01442	0.46	+0.1
1,511,113	-		EFB2_01442	0.46	-0.2
1,511,113	-		EFB2_01442	0.46	-0.6
1,511,113	-		EFB2_01442	0.46	+1.2
1,511,113	-		EFB2_01442	0.46	+0.9
1,511,113	-		EFB2_01442	0.46	-1.3
1,511,113	-		EFB2_01442	0.46	-2.6
1,511,113	-		EFB2_01442	0.46	+0.9
1,511,113	-		EFB2_01442	0.46	-0.1
1,511,113	-		EFB2_01442	0.46	+1.8
1,511,113	-		EFB2_01442	0.46	-1.8
1,511,113	-		EFB2_01442	0.46	-2.0
1,511,113	-		EFB2_01442	0.46	+1.0
1,511,113	-		EFB2_01442	0.46	-0.9
1,511,113	-		EFB2_01442	0.46	+2.0
1,511,113	-		EFB2_01442	0.46	+0.7
1,511,116	+		EFB2_01442	0.47	-2.8
1,511,116	+		EFB2_01442	0.47	+0.0
1,511,116	+		EFB2_01442	0.47	-0.5
1,511,116	+		EFB2_01442	0.47	+0.3
1,511,116	+		EFB2_01442	0.47	-0.4
1,511,116	+		EFB2_01442	0.47	+0.8
1,511,116	+		EFB2_01442	0.47	+0.6
1,511,116	+		EFB2_01442	0.47	-2.8
1,511,116	+		EFB2_01442	0.47	+0.0
1,511,116	+		EFB2_01442	0.47	-0.1
1,511,116	+		EFB2_01442	0.47	-0.3
1,511,116	+		EFB2_01442	0.47	-2.2
1,511,116	+		EFB2_01442	0.47	+0.7
1,511,116	+		EFB2_01442	0.47	-0.3
1,511,116	+		EFB2_01442	0.47	+0.1
1,511,116	+		EFB2_01442	0.47	-1.8
1,511,116	+		EFB2_01442	0.47	-1.3
1,511,116	+		EFB2_01442	0.47	+0.1
1,511,116	+		EFB2_01442	0.47	-0.4
1,511,116	+		EFB2_01442	0.47	-3.1
1,511,116	+		EFB2_01442	0.47	-0.5
1,511,116	+		EFB2_01442	0.47	+1.0
1,511,116	+		EFB2_01442	0.47	-0.6
1,511,116	+		EFB2_01442	0.47	-0.7
1,511,116	+		EFB2_01442	0.47	-0.7
1,511,116	+		EFB2_01442	0.47	-2.2
1,511,117	-		EFB2_01442	0.47	-0.3
1,511,117	-		EFB2_01442	0.47	-0.6
1,511,117	-		EFB2_01442	0.47	+0.7
1,511,117	-		EFB2_01442	0.47	-4.0
1,511,117	-		EFB2_01442	0.47	-1.0
1,511,117	-		EFB2_01442	0.47	+0.2
1,511,117	-		EFB2_01442	0.47	-1.8
1,511,117	-		EFB2_01442	0.47	-0.7
1,511,117	-		EFB2_01442	0.47	-3.0
1,511,117	-		EFB2_01442	0.47	+1.1
1,511,117	-		EFB2_01442	0.47	+0.7
1,511,117	-		EFB2_01442	0.47	-1.9
1,511,117	-		EFB2_01442	0.47	-0.0
1,511,117	-		EFB2_01442	0.47	-2.0
1,511,117	-		EFB2_01442	0.47	-2.7
1,511,117	-		EFB2_01442	0.47	+1.4
1,511,117	-		EFB2_01442	0.47	-1.2
1,511,117	-		EFB2_01442	0.47	-0.8
1,511,117	-		EFB2_01442	0.47	-2.0
1,511,117	-		EFB2_01442	0.47	-2.2
1,511,117	-		EFB2_01442	0.47	+1.2
1,511,117	-		EFB2_01442	0.47	-1.3
1,511,117	-		EFB2_01442	0.47	-0.7
1,511,117	-		EFB2_01442	0.47	-2.4
1,511,117	-		EFB2_01442	0.47	-1.3
1,511,117	-		EFB2_01442	0.47	+0.2
1,511,117	-		EFB2_01442	0.47	-1.4
1,511,117	-		EFB2_01442	0.47	-3.8
1,511,117	-		EFB2_01442	0.47	+1.5
1,511,117	-		EFB2_01442	0.47	+1.4
1,511,117	-		EFB2_01442	0.47	-3.2
1,511,117	-		EFB2_01442	0.47	+0.7
1,511,117	-		EFB2_01442	0.47	-1.0
1,511,117	-		EFB2_01442	0.47	+1.6
1,511,117	-		EFB2_01442	0.47	+0.2
1,511,117	-		EFB2_01442	0.47	+0.8
1,511,117	-		EFB2_01442	0.47	+0.9
1,511,117	-		EFB2_01442	0.47	+0.5
1,511,158	+		EFB2_01442	0.51	-0.1
1,511,158	+		EFB2_01442	0.51	+0.8
1,511,159	-		EFB2_01442	0.51	-1.5
1,511,159	-		EFB2_01442	0.51	-1.0
1,511,159	-		EFB2_01442	0.51	-0.3
1,511,159	-		EFB2_01442	0.51	-2.6
1,511,159	-		EFB2_01442	0.51	-1.0
1,511,159	-		EFB2_01442	0.51	+0.3
1,511,258	-		EFB2_01442	0.60	-0.6
1,511,265	+		EFB2_01442	0.61	-1.7
1,511,266	-		EFB2_01442	0.61	+0.3
1,511,336	+		EFB2_01442	0.68	+1.0
1,511,336	+		EFB2_01442	0.68	+1.4
1,511,337	-		EFB2_01442	0.68	-0.7
1,511,337	-		EFB2_01442	0.68	-1.6
1,511,366	+		EFB2_01442	0.70	-0.1
1,511,366	+		EFB2_01442	0.70	+0.6
1,511,366	+		EFB2_01442	0.70	-1.1
1,511,366	+		EFB2_01442	0.70	-1.2
1,511,366	+		EFB2_01442	0.70	-1.5
1,511,366	+		EFB2_01442	0.70	+1.7
1,511,366	+		EFB2_01442	0.70	+0.3
1,511,366	+		EFB2_01442	0.70	+0.2
1,511,366	+		EFB2_01442	0.70	+0.3
1,511,366	+		EFB2_01442	0.70	-0.9
1,511,366	+		EFB2_01442	0.70	+1.2
1,511,366	+		EFB2_01442	0.70	+0.3
1,511,366	+		EFB2_01442	0.70	-1.4
1,511,366	+		EFB2_01442	0.70	+0.0
1,511,366	+		EFB2_01442	0.70	-0.2
1,511,366	+		EFB2_01442	0.70	+0.9
1,511,367	-		EFB2_01442	0.70	-1.5
1,511,367	-		EFB2_01442	0.70	+0.5
1,511,367	-		EFB2_01442	0.70	-1.1
1,511,367	-		EFB2_01442	0.70	+0.4
1,511,367	-		EFB2_01442	0.70	-0.9
1,511,367	-		EFB2_01442	0.70	+0.4
1,511,367	-		EFB2_01442	0.70	+1.3
1,511,367	-		EFB2_01442	0.70	+0.8
1,511,367	-		EFB2_01442	0.70	-0.4
1,511,367	-		EFB2_01442	0.70	+1.0
1,511,367	-		EFB2_01442	0.70	-0.2
1,511,367	-		EFB2_01442	0.70	+1.9
1,511,367	-		EFB2_01442	0.70	+1.6
1,511,367	-		EFB2_01442	0.70	-0.1
1,511,367	-		EFB2_01442	0.70	-0.9
1,511,367	-		EFB2_01442	0.70	+0.8
1,511,367	-		EFB2_01442	0.70	-0.2
1,511,367	-		EFB2_01442	0.70	-0.3
1,511,367	-		EFB2_01442	0.70	-0.3
1,511,367	-		EFB2_01442	0.70	-1.2
1,511,367	-		EFB2_01442	0.70	-1.4
1,511,367	-		EFB2_01442	0.70	-3.0
1,511,367	-		EFB2_01442	0.70	+0.8
1,511,367	-		EFB2_01442	0.70	+0.6
1,511,380	+		EFB2_01442	0.72	+1.2
1,511,380	+		EFB2_01442	0.72	-0.5
1,511,381	-		EFB2_01442	0.72	+0.7
1,511,381	-		EFB2_01442	0.72	-1.4
1,511,381	-		EFB2_01442	0.72	+0.3
1,511,442	+		EFB2_01442	0.78	-1.5
1,511,442	+		EFB2_01442	0.78	+1.5
1,511,442	+		EFB2_01442	0.78	+1.6
1,511,442	+		EFB2_01442	0.78	-0.8
1,511,443	-		EFB2_01442	0.78	-2.9
1,511,443	-		EFB2_01442	0.78	+1.5
1,511,443	-		EFB2_01442	0.78	-1.7
1,511,443	-		EFB2_01442	0.78	+1.0
1,511,443	-		EFB2_01442	0.78	+0.5
1,511,443	-		EFB2_01442	0.78	+0.5
1,511,443	-		EFB2_01442	0.78	-0.5
1,511,443	-		EFB2_01442	0.78	+0.2
1,511,443	-		EFB2_01442	0.78	-0.7
1,511,443	-		EFB2_01442	0.78	-1.5
1,511,443	-		EFB2_01442	0.78	+1.0
1,511,497	+		EFB2_01442	0.83	-0.7
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