Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS27435

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS24930 and COO64_RS27435 are separated by 86 nucleotides COO64_RS24930: COO64_RS24930 - TonB-dependent receptor, at 123,220 to 125,457 _RS24930 COO64_RS27435: COO64_RS27435 - hypothetical protein, at 125,544 to 125,723 _RS27435 Position (kb) 125 126Strain fitness (log2 ratio) -2 -1 0 1at 124.544 kb on + strand, within COO64_RS24930at 124.545 kb on - strand, within COO64_RS24930at 124.658 kb on + strand, within COO64_RS24930at 124.658 kb on + strand, within COO64_RS24930at 124.796 kb on + strand, within COO64_RS24930at 124.848 kb on - strand, within COO64_RS24930at 125.015 kb on + strand, within COO64_RS24930at 125.115 kb on - strand, within COO64_RS24930at 125.174 kb on + strand, within COO64_RS24930at 125.174 kb on + strand, within COO64_RS24930at 125.174 kb on + strand, within COO64_RS24930at 125.174 kb on + strand, within COO64_RS24930at 125.445 kb on + strandat 125.518 kb on + strandat 125.568 kb on - strand, within COO64_RS27435at 125.571 kb on + strand, within COO64_RS27435at 125.571 kb on + strand, within COO64_RS27435at 125.572 kb on - strand, within COO64_RS27435

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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124,544 + COO64_RS24930 0.59 -0.3
124,545 - COO64_RS24930 0.59 -0.9
124,658 + COO64_RS24930 0.64 +0.2
124,658 + COO64_RS24930 0.64 +0.5
124,796 + COO64_RS24930 0.70 -0.0
124,848 - COO64_RS24930 0.73 -2.0
125,015 + COO64_RS24930 0.80 -1.9
125,115 - COO64_RS24930 0.85 +0.0
125,174 + COO64_RS24930 0.87 -0.0
125,174 + COO64_RS24930 0.87 -1.9
125,174 + COO64_RS24930 0.87 -0.2
125,174 + COO64_RS24930 0.87 -0.2
125,445 + -0.6
125,518 + -0.9
125,568 - COO64_RS27435 0.13 -0.8
125,571 + COO64_RS27435 0.15 -1.2
125,571 + COO64_RS27435 0.15 +0.2
125,572 - COO64_RS27435 0.16 -1.5

Or see this region's nucleotide sequence