Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS25800

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS25795 and COO64_RS25800 are separated by 99 nucleotidesCOO64_RS25800 and COO64_RS25805 are separated by 131 nucleotides COO64_RS25795: COO64_RS25795 - transporter substrate-binding domain-containing protein, at 32,805 to 33,716 _RS25795 COO64_RS25800: COO64_RS25800 - Lrp/AsnC family transcriptional regulator, at 33,816 to 34,253 _RS25800 COO64_RS25805: COO64_RS25805 - DMT family transporter, at 34,385 to 35,290 _RS25805 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 32.967 kb on + strand, within COO64_RS25795at 32.967 kb on + strand, within COO64_RS25795at 32.967 kb on + strand, within COO64_RS25795at 32.968 kb on - strand, within COO64_RS25795at 32.968 kb on - strand, within COO64_RS25795at 32.968 kb on - strand, within COO64_RS25795at 32.968 kb on - strand, within COO64_RS25795at 32.968 kb on - strand, within COO64_RS25795at 33.000 kb on + strand, within COO64_RS25795at 33.075 kb on + strand, within COO64_RS25795at 33.190 kb on - strand, within COO64_RS25795at 33.190 kb on - strand, within COO64_RS25795at 33.197 kb on + strand, within COO64_RS25795at 33.198 kb on - strand, within COO64_RS25795at 33.306 kb on + strand, within COO64_RS25795at 33.307 kb on - strand, within COO64_RS25795at 33.318 kb on + strand, within COO64_RS25795at 33.380 kb on + strand, within COO64_RS25795at 33.380 kb on + strand, within COO64_RS25795at 33.380 kb on + strand, within COO64_RS25795at 33.381 kb on - strand, within COO64_RS25795at 33.414 kb on + strand, within COO64_RS25795at 33.414 kb on + strand, within COO64_RS25795at 33.414 kb on + strand, within COO64_RS25795at 33.414 kb on + strand, within COO64_RS25795at 33.414 kb on + strand, within COO64_RS25795at 33.415 kb on - strand, within COO64_RS25795at 33.415 kb on - strand, within COO64_RS25795at 33.415 kb on - strand, within COO64_RS25795at 33.435 kb on + strand, within COO64_RS25795at 33.507 kb on + strand, within COO64_RS25795at 33.507 kb on + strand, within COO64_RS25795at 33.507 kb on + strand, within COO64_RS25795at 33.508 kb on - strand, within COO64_RS25795at 33.508 kb on - strand, within COO64_RS25795at 33.508 kb on - strand, within COO64_RS25795at 33.577 kb on - strand, within COO64_RS25795at 33.577 kb on - strand, within COO64_RS25795at 33.603 kb on + strand, within COO64_RS25795at 33.603 kb on + strand, within COO64_RS25795at 33.603 kb on + strand, within COO64_RS25795at 33.603 kb on + strand, within COO64_RS25795at 33.603 kb on + strand, within COO64_RS25795at 33.604 kb on - strand, within COO64_RS25795at 33.604 kb on - strand, within COO64_RS25795at 33.604 kb on - strand, within COO64_RS25795at 33.604 kb on - strand, within COO64_RS25795at 33.604 kb on - strand, within COO64_RS25795at 33.645 kb on - strandat 33.809 kb on + strandat 33.809 kb on + strandat 33.809 kb on + strandat 33.810 kb on - strandat 33.810 kb on - strandat 33.810 kb on - strandat 34.191 kb on - strand, within COO64_RS25800at 34.191 kb on - strand, within COO64_RS25800at 34.291 kb on + strandat 34.291 kb on + strandat 34.291 kb on + strandat 34.291 kb on + strandat 34.301 kb on - strandat 34.301 kb on - strandat 34.314 kb on - strandat 34.314 kb on - strandat 34.314 kb on - strandat 34.323 kb on + strandat 34.324 kb on - strandat 34.649 kb on + strand, within COO64_RS25805at 34.683 kb on + strand, within COO64_RS25805at 34.683 kb on + strand, within COO64_RS25805at 34.683 kb on + strand, within COO64_RS25805at 34.683 kb on + strand, within COO64_RS25805at 34.683 kb on + strand, within COO64_RS25805at 34.685 kb on + strand, within COO64_RS25805at 34.685 kb on + strand, within COO64_RS25805at 34.685 kb on + strand, within COO64_RS25805at 34.685 kb on + strand, within COO64_RS25805at 34.685 kb on + strand, within COO64_RS25805at 34.685 kb on + strand, within COO64_RS25805at 34.685 kb on + strand, within COO64_RS25805at 34.686 kb on - strand, within COO64_RS25805at 34.686 kb on - strand, within COO64_RS25805at 34.686 kb on - strand, within COO64_RS25805at 34.686 kb on - strand, within COO64_RS25805at 34.710 kb on + strand, within COO64_RS25805at 34.710 kb on + strand, within COO64_RS25805at 34.711 kb on - strand, within COO64_RS25805at 34.711 kb on - strand, within COO64_RS25805at 34.839 kb on - strand, within COO64_RS25805at 34.880 kb on + strand, within COO64_RS25805at 34.881 kb on - strand, within COO64_RS25805at 35.063 kb on + strand, within COO64_RS25805at 35.063 kb on + strand, within COO64_RS25805at 35.063 kb on + strand, within COO64_RS25805at 35.063 kb on + strand, within COO64_RS25805at 35.063 kb on + strand, within COO64_RS25805at 35.063 kb on + strand, within COO64_RS25805at 35.063 kb on + strand, within COO64_RS25805at 35.063 kb on + strand, within COO64_RS25805at 35.064 kb on - strand, within COO64_RS25805at 35.064 kb on - strand, within COO64_RS25805at 35.064 kb on - strand, within COO64_RS25805at 35.064 kb on - strand, within COO64_RS25805at 35.064 kb on - strand, within COO64_RS25805at 35.064 kb on - strand, within COO64_RS25805at 35.064 kb on - strand, within COO64_RS25805at 35.064 kb on - strand, within COO64_RS25805at 35.064 kb on - strand, within COO64_RS25805at 35.064 kb on - strand, within COO64_RS25805at 35.064 kb on - strand, within COO64_RS25805at 35.064 kb on - strand, within COO64_RS25805at 35.129 kb on + strand, within COO64_RS25805at 35.129 kb on + strand, within COO64_RS25805at 35.129 kb on + strand, within COO64_RS25805at 35.130 kb on - strand, within COO64_RS25805at 35.230 kb on + strandat 35.231 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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32,967 + COO64_RS25795 0.18 +1.0
32,967 + COO64_RS25795 0.18 +1.4
32,967 + COO64_RS25795 0.18 +0.7
32,968 - COO64_RS25795 0.18 +0.0
32,968 - COO64_RS25795 0.18 -0.7
32,968 - COO64_RS25795 0.18 +0.3
32,968 - COO64_RS25795 0.18 -0.5
32,968 - COO64_RS25795 0.18 -0.2
33,000 + COO64_RS25795 0.21 -0.3
33,075 + COO64_RS25795 0.30 +0.6
33,190 - COO64_RS25795 0.42 -0.5
33,190 - COO64_RS25795 0.42 +0.3
33,197 + COO64_RS25795 0.43 +1.3
33,198 - COO64_RS25795 0.43 -0.5
33,306 + COO64_RS25795 0.55 -1.0
33,307 - COO64_RS25795 0.55 -0.5
33,318 + COO64_RS25795 0.56 -0.6
33,380 + COO64_RS25795 0.63 -0.4
33,380 + COO64_RS25795 0.63 +0.5
33,380 + COO64_RS25795 0.63 +0.3
33,381 - COO64_RS25795 0.63 +0.8
33,414 + COO64_RS25795 0.67 +0.2
33,414 + COO64_RS25795 0.67 +0.4
33,414 + COO64_RS25795 0.67 -1.3
33,414 + COO64_RS25795 0.67 +0.2
33,414 + COO64_RS25795 0.67 +0.6
33,415 - COO64_RS25795 0.67 +1.2
33,415 - COO64_RS25795 0.67 -0.1
33,415 - COO64_RS25795 0.67 +0.2
33,435 + COO64_RS25795 0.69 +0.5
33,507 + COO64_RS25795 0.77 -1.3
33,507 + COO64_RS25795 0.77 +0.0
33,507 + COO64_RS25795 0.77 -0.1
33,508 - COO64_RS25795 0.77 +0.6
33,508 - COO64_RS25795 0.77 +0.1
33,508 - COO64_RS25795 0.77 -0.8
33,577 - COO64_RS25795 0.85 +1.4
33,577 - COO64_RS25795 0.85 -0.4
33,603 + COO64_RS25795 0.88 +1.1
33,603 + COO64_RS25795 0.88 -0.7
33,603 + COO64_RS25795 0.88 +0.7
33,603 + COO64_RS25795 0.88 +0.7
33,603 + COO64_RS25795 0.88 +0.6
33,604 - COO64_RS25795 0.88 +0.1
33,604 - COO64_RS25795 0.88 -0.7
33,604 - COO64_RS25795 0.88 +1.1
33,604 - COO64_RS25795 0.88 -1.6
33,604 - COO64_RS25795 0.88 +0.3
33,645 - +0.5
33,809 + -0.1
33,809 + -0.6
33,809 + +0.3
33,810 - -1.0
33,810 - +0.0
33,810 - -1.0
34,191 - COO64_RS25800 0.86 -0.5
34,191 - COO64_RS25800 0.86 -0.7
34,291 + -0.2
34,291 + -0.1
34,291 + -0.5
34,291 + -2.1
34,301 - +0.5
34,301 - +0.9
34,314 - -0.3
34,314 - +0.3
34,314 - +1.0
34,323 + +0.4
34,324 - +1.5
34,649 + COO64_RS25805 0.29 -0.4
34,683 + COO64_RS25805 0.33 -0.6
34,683 + COO64_RS25805 0.33 -0.2
34,683 + COO64_RS25805 0.33 -1.4
34,683 + COO64_RS25805 0.33 +0.4
34,683 + COO64_RS25805 0.33 +0.3
34,685 + COO64_RS25805 0.33 +1.9
34,685 + COO64_RS25805 0.33 +0.0
34,685 + COO64_RS25805 0.33 -0.6
34,685 + COO64_RS25805 0.33 +0.2
34,685 + COO64_RS25805 0.33 -0.2
34,685 + COO64_RS25805 0.33 -0.2
34,685 + COO64_RS25805 0.33 +0.8
34,686 - COO64_RS25805 0.33 +0.4
34,686 - COO64_RS25805 0.33 -0.4
34,686 - COO64_RS25805 0.33 -0.1
34,686 - COO64_RS25805 0.33 -0.8
34,710 + COO64_RS25805 0.36 -2.0
34,710 + COO64_RS25805 0.36 +0.9
34,711 - COO64_RS25805 0.36 -2.7
34,711 - COO64_RS25805 0.36 +0.4
34,839 - COO64_RS25805 0.50 -1.0
34,880 + COO64_RS25805 0.55 +0.1
34,881 - COO64_RS25805 0.55 -0.4
35,063 + COO64_RS25805 0.75 +1.1
35,063 + COO64_RS25805 0.75 -1.9
35,063 + COO64_RS25805 0.75 -0.3
35,063 + COO64_RS25805 0.75 +1.5
35,063 + COO64_RS25805 0.75 +0.2
35,063 + COO64_RS25805 0.75 -1.3
35,063 + COO64_RS25805 0.75 -0.1
35,063 + COO64_RS25805 0.75 -0.4
35,064 - COO64_RS25805 0.75 -0.1
35,064 - COO64_RS25805 0.75 -0.8
35,064 - COO64_RS25805 0.75 -0.5
35,064 - COO64_RS25805 0.75 +0.3
35,064 - COO64_RS25805 0.75 -0.0
35,064 - COO64_RS25805 0.75 -1.1
35,064 - COO64_RS25805 0.75 -0.4
35,064 - COO64_RS25805 0.75 -0.0
35,064 - COO64_RS25805 0.75 -1.0
35,064 - COO64_RS25805 0.75 -0.6
35,064 - COO64_RS25805 0.75 -0.6
35,064 - COO64_RS25805 0.75 +0.5
35,129 + COO64_RS25805 0.82 -1.2
35,129 + COO64_RS25805 0.82 -0.7
35,129 + COO64_RS25805 0.82 -0.6
35,130 - COO64_RS25805 0.82 -0.5
35,230 + -0.5
35,231 - +0.9

Or see this region's nucleotide sequence