Experiment: supernatant control, M9 with 0.25X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS24265 and COO64_RS24270 are separated by 358 nucleotides COO64_RS24270 and COO64_RS24275 are separated by 10 nucleotides COO64_RS24275 and nuoC are separated by 78 nucleotides
COO64_RS24265: COO64_RS24265 - lysoplasmalogenase, at 63,085 to 63,747
_RS24265
COO64_RS24270: COO64_RS24270 - NADH-quinone oxidoreductase subunit A, at 64,106 to 64,519
_RS24270
COO64_RS24275: COO64_RS24275 - NADH-quinone oxidoreductase subunit B, at 64,530 to 65,207
_RS24275
COO64_RS24280: nuoC - NADH-quinone oxidoreductase subunit C/D, at 65,286 to 67,067
nuoC
Position (kb) 64
65 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 63.136 kb on + strand at 63.136 kb on + strand at 63.136 kb on + strand at 63.136 kb on + strand at 63.136 kb on + strand at 63.136 kb on + strand at 63.136 kb on + strand at 63.136 kb on + strand at 63.136 kb on + strand at 63.136 kb on + strand at 63.137 kb on - strand at 63.137 kb on - strand at 63.137 kb on - strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.140 kb on + strand at 63.141 kb on - strand at 63.141 kb on - strand at 63.141 kb on - strand at 63.141 kb on - strand at 63.141 kb on - strand at 63.141 kb on - strand at 63.141 kb on - strand at 63.141 kb on - strand at 63.141 kb on - strand at 63.141 kb on - strand at 63.141 kb on - strand at 63.141 kb on - strand at 63.142 kb on + strand at 63.142 kb on + strand at 63.142 kb on + strand at 63.142 kb on + strand at 63.142 kb on + strand at 63.142 kb on + strand at 63.143 kb on - strand at 63.143 kb on - strand at 63.143 kb on - strand at 63.143 kb on - strand at 63.143 kb on - strand at 63.258 kb on + strand, within COO64_RS24265 at 63.259 kb on - strand, within COO64_RS24265 at 63.358 kb on + strand, within COO64_RS24265 at 63.358 kb on + strand, within COO64_RS24265 at 63.358 kb on + strand, within COO64_RS24265 at 63.359 kb on - strand, within COO64_RS24265 at 63.493 kb on + strand, within COO64_RS24265 at 63.632 kb on - strand, within COO64_RS24265 at 63.632 kb on - strand, within COO64_RS24265 at 63.640 kb on - strand, within COO64_RS24265 at 63.685 kb on + strand at 63.685 kb on + strand at 63.686 kb on - strand at 63.780 kb on + strand at 63.780 kb on + strand at 63.780 kb on + strand at 63.781 kb on - strand at 63.781 kb on - strand at 63.781 kb on - strand at 63.781 kb on - strand at 63.781 kb on - strand at 63.813 kb on + strand at 63.814 kb on - strand at 63.890 kb on + strand at 63.890 kb on + strand at 63.890 kb on + strand at 63.891 kb on - strand at 63.894 kb on + strand at 63.966 kb on - strand at 64.007 kb on - strand at 64.043 kb on + strand at 64.043 kb on + strand at 64.044 kb on - strand at 64.090 kb on + strand at 64.090 kb on + strand at 64.090 kb on + strand at 64.090 kb on + strand at 64.091 kb on - strand at 64.092 kb on + strand at 64.420 kb on - strand, within COO64_RS24270 at 64.420 kb on - strand, within COO64_RS24270 at 64.445 kb on + strand, within COO64_RS24270 at 64.445 kb on + strand, within COO64_RS24270 at 64.445 kb on + strand, within COO64_RS24270 at 64.446 kb on - strand, within COO64_RS24270 at 64.446 kb on - strand, within COO64_RS24270 at 64.446 kb on - strand, within COO64_RS24270 at 64.449 kb on + strand, within COO64_RS24270 at 64.449 kb on + strand, within COO64_RS24270 at 64.450 kb on - strand, within COO64_RS24270 at 64.450 kb on - strand, within COO64_RS24270 at 64.536 kb on + strand at 64.536 kb on + strand at 64.536 kb on + strand at 64.536 kb on + strand at 64.536 kb on + strand at 64.537 kb on - strand at 64.537 kb on - strand at 64.618 kb on + strand, within COO64_RS24275 at 64.619 kb on - strand, within COO64_RS24275 at 64.619 kb on - strand, within COO64_RS24275 at 64.695 kb on - strand, within COO64_RS24275 at 64.714 kb on - strand, within COO64_RS24275 at 64.737 kb on + strand, within COO64_RS24275 at 64.737 kb on + strand, within COO64_RS24275 at 64.737 kb on + strand, within COO64_RS24275 at 64.737 kb on + strand, within COO64_RS24275 at 64.738 kb on - strand, within COO64_RS24275 at 64.950 kb on + strand, within COO64_RS24275 at 64.951 kb on - strand, within COO64_RS24275 at 64.951 kb on - strand, within COO64_RS24275 at 64.960 kb on - strand, within COO64_RS24275 at 65.004 kb on + strand, within COO64_RS24275 at 65.005 kb on - strand, within COO64_RS24275 at 65.005 kb on - strand, within COO64_RS24275 at 65.122 kb on - strand, within COO64_RS24275 at 65.122 kb on - strand, within COO64_RS24275 at 65.260 kb on + strand at 65.261 kb on - strand at 65.303 kb on + strand at 65.303 kb on + strand at 65.304 kb on - strand at 65.307 kb on + strand at 65.307 kb on + strand at 65.307 kb on + strand at 65.307 kb on + strand at 65.307 kb on + strand at 65.307 kb on + strand at 65.307 kb on + strand at 65.307 kb on + strand at 65.307 kb on + strand at 65.307 kb on + strand at 65.307 kb on + strand at 65.307 kb on + strand at 65.308 kb on - strand at 65.308 kb on - strand at 65.308 kb on - strand at 65.308 kb on - strand at 65.308 kb on - strand at 65.308 kb on - strand at 65.308 kb on - strand at 65.319 kb on + strand at 65.320 kb on - strand at 65.320 kb on - strand at 65.320 kb on - strand at 65.320 kb on - strand at 65.478 kb on + strand, within nuoC at 65.479 kb on - strand, within nuoC at 65.491 kb on - strand, within nuoC at 65.491 kb on - strand, within nuoC at 65.491 kb on - strand, within nuoC
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB remove 63,136 + -0.0 63,136 + -1.6 63,136 + +0.0 63,136 + -0.2 63,136 + +1.2 63,136 + -0.7 63,136 + +0.2 63,136 + -0.3 63,136 + +0.2 63,136 + -0.4 63,137 - +0.2 63,137 - +2.0 63,137 - -1.7 63,140 + -0.0 63,140 + +1.2 63,140 + -0.3 63,140 + +0.0 63,140 + +0.5 63,140 + +0.1 63,140 + -0.4 63,140 + -0.8 63,140 + -2.2 63,140 + -1.4 63,140 + -1.5 63,140 + -0.1 63,140 + +0.7 63,140 + -0.0 63,141 - +0.4 63,141 - -0.0 63,141 - -1.2 63,141 - +0.4 63,141 - +1.7 63,141 - +0.9 63,141 - -1.0 63,141 - +1.2 63,141 - -0.2 63,141 - +0.4 63,141 - +0.2 63,141 - -0.2 63,142 + +0.4 63,142 + +0.4 63,142 + +0.8 63,142 + -0.2 63,142 + -1.0 63,142 + -0.4 63,143 - +0.6 63,143 - +0.2 63,143 - +1.2 63,143 - -0.7 63,143 - -0.3 63,258 + COO64_RS24265 0.26 +0.1 63,259 - COO64_RS24265 0.26 +2.3 63,358 + COO64_RS24265 0.41 -0.0 63,358 + COO64_RS24265 0.41 +1.4 63,358 + COO64_RS24265 0.41 -0.3 63,359 - COO64_RS24265 0.41 -0.8 63,493 + COO64_RS24265 0.62 +0.2 63,632 - COO64_RS24265 0.83 +0.6 63,632 - COO64_RS24265 0.83 -0.8 63,640 - COO64_RS24265 0.84 -0.2 63,685 + -0.7 63,685 + +0.1 63,686 - -0.5 63,780 + -0.9 63,780 + +0.8 63,780 + -0.1 63,781 - +2.0 63,781 - +0.4 63,781 - +1.1 63,781 - +0.5 63,781 - +0.6 63,813 + -0.6 63,814 - +0.1 63,890 + -0.3 63,890 + +0.3 63,890 + +0.3 63,891 - -1.0 63,894 + +1.2 63,966 - -0.4 64,007 - -0.0 64,043 + +0.7 64,043 + -0.4 64,044 - +0.2 64,090 + +0.1 64,090 + -0.6 64,090 + +0.4 64,090 + +0.5 64,091 - +1.0 64,092 + +0.4 64,420 - COO64_RS24270 0.76 +1.2 64,420 - COO64_RS24270 0.76 +0.6 64,445 + COO64_RS24270 0.82 -0.6 64,445 + COO64_RS24270 0.82 +0.6 64,445 + COO64_RS24270 0.82 -1.0 64,446 - COO64_RS24270 0.82 -1.2 64,446 - COO64_RS24270 0.82 -0.5 64,446 - COO64_RS24270 0.82 -0.6 64,449 + COO64_RS24270 0.83 +0.6 64,449 + COO64_RS24270 0.83 -1.9 64,450 - COO64_RS24270 0.83 +1.0 64,450 - COO64_RS24270 0.83 -0.8 64,536 + +0.5 64,536 + +0.4 64,536 + -0.4 64,536 + -0.4 64,536 + +1.0 64,537 - +0.8 64,537 - -0.6 64,618 + COO64_RS24275 0.13 +1.4 64,619 - COO64_RS24275 0.13 -0.8 64,619 - COO64_RS24275 0.13 -0.9 64,695 - COO64_RS24275 0.24 -0.0 64,714 - COO64_RS24275 0.27 +0.4 64,737 + COO64_RS24275 0.31 +1.2 64,737 + COO64_RS24275 0.31 +0.6 64,737 + COO64_RS24275 0.31 +0.4 64,737 + COO64_RS24275 0.31 +0.2 64,738 - COO64_RS24275 0.31 +0.5 64,950 + COO64_RS24275 0.62 -0.8 64,951 - COO64_RS24275 0.62 -0.2 64,951 - COO64_RS24275 0.62 -0.8 64,960 - COO64_RS24275 0.63 -1.4 65,004 + COO64_RS24275 0.70 -0.0 65,005 - COO64_RS24275 0.70 -0.0 65,005 - COO64_RS24275 0.70 +1.5 65,122 - COO64_RS24275 0.87 +0.2 65,122 - COO64_RS24275 0.87 -0.6 65,260 + -0.5 65,261 - +0.2 65,303 + +0.6 65,303 + +1.0 65,304 - +0.4 65,307 + +1.2 65,307 + +1.2 65,307 + -0.7 65,307 + -1.2 65,307 + +0.6 65,307 + +0.7 65,307 + +0.7 65,307 + -1.0 65,307 + +1.0 65,307 + -0.6 65,307 + -0.0 65,307 + -0.8 65,308 - +0.4 65,308 - -0.0 65,308 - +3.0 65,308 - -0.5 65,308 - +0.3 65,308 - -0.6 65,308 - +0.7 65,319 + +1.0 65,320 - +1.2 65,320 - +0.2 65,320 - -0.0 65,320 - +2.0 65,478 + nuoC COO64_RS24280 0.11 +0.4 65,479 - nuoC COO64_RS24280 0.11 +1.2 65,491 - nuoC COO64_RS24280 0.12 -0.8 65,491 - nuoC COO64_RS24280 0.12 +0.4 65,491 - nuoC COO64_RS24280 0.12 +0.4
Or see this region's nucleotide sequence