Experiment: supernatant control, M9 with 0.25X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS23095 and COO64_RS23100 are separated by 159 nucleotides COO64_RS23100 and COO64_RS23105 are separated by 415 nucleotides COO64_RS23105 and COO64_RS23110 are separated by 56 nucleotides COO64_RS23110 and COO64_RS23115 are separated by 108 nucleotides
COO64_RS23095: COO64_RS23095 - hypothetical protein, at 43,159 to 43,353
_RS23095
COO64_RS23100: COO64_RS23100 - hypothetical protein, at 43,513 to 43,917
_RS23100
COO64_RS23105: COO64_RS23105 - YceK/YidQ family lipoprotein, at 44,333 to 44,653
_RS23105
COO64_RS23110: COO64_RS23110 - hypothetical protein, at 44,710 to 45,021
_RS23110
COO64_RS23115: COO64_RS23115 - helix-turn-helix domain-containing protein, at 45,130 to 45,948
_RS23115
Position (kb) 44
45 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.418 kb on + strand at 43.418 kb on + strand at 43.431 kb on + strand at 43.451 kb on - strand at 43.495 kb on + strand at 43.495 kb on + strand at 43.600 kb on - strand, within COO64_RS23100 at 43.652 kb on + strand, within COO64_RS23100 at 43.671 kb on - strand, within COO64_RS23100 at 43.671 kb on - strand, within COO64_RS23100 at 43.755 kb on + strand, within COO64_RS23100 at 43.755 kb on + strand, within COO64_RS23100 at 43.755 kb on + strand, within COO64_RS23100 at 43.756 kb on - strand, within COO64_RS23100 at 43.757 kb on + strand, within COO64_RS23100 at 43.758 kb on - strand, within COO64_RS23100 at 43.758 kb on - strand, within COO64_RS23100 at 43.758 kb on - strand, within COO64_RS23100 at 43.861 kb on - strand, within COO64_RS23100 at 43.877 kb on + strand at 43.877 kb on + strand at 43.878 kb on - strand at 44.015 kb on + strand at 44.015 kb on + strand at 44.015 kb on + strand at 44.016 kb on - strand at 44.050 kb on + strand at 44.059 kb on + strand at 44.059 kb on + strand at 44.059 kb on + strand at 44.120 kb on + strand at 44.121 kb on - strand at 44.122 kb on + strand at 44.122 kb on + strand at 44.122 kb on + strand at 44.123 kb on - strand at 44.123 kb on - strand at 44.123 kb on - strand at 44.123 kb on - strand at 44.123 kb on - strand at 44.123 kb on - strand at 44.152 kb on + strand at 44.152 kb on + strand at 44.152 kb on + strand at 44.153 kb on - strand at 44.155 kb on + strand at 44.156 kb on - strand at 44.156 kb on - strand at 44.165 kb on + strand at 44.165 kb on + strand at 44.166 kb on - strand at 44.340 kb on + strand at 44.418 kb on + strand, within COO64_RS23105 at 44.418 kb on + strand, within COO64_RS23105 at 44.418 kb on + strand, within COO64_RS23105 at 44.418 kb on + strand, within COO64_RS23105 at 44.419 kb on - strand, within COO64_RS23105 at 44.626 kb on + strand at 44.627 kb on - strand at 44.648 kb on + strand at 44.649 kb on - strand at 44.649 kb on - strand at 44.649 kb on - strand at 44.740 kb on + strand at 44.740 kb on + strand at 44.741 kb on - strand at 44.741 kb on - strand at 44.748 kb on - strand, within COO64_RS23110 at 44.748 kb on - strand, within COO64_RS23110 at 44.792 kb on + strand, within COO64_RS23110 at 44.792 kb on + strand, within COO64_RS23110 at 44.792 kb on + strand, within COO64_RS23110 at 44.792 kb on + strand, within COO64_RS23110 at 44.792 kb on + strand, within COO64_RS23110 at 44.792 kb on + strand, within COO64_RS23110 at 44.792 kb on + strand, within COO64_RS23110 at 44.792 kb on + strand, within COO64_RS23110 at 44.792 kb on + strand, within COO64_RS23110 at 44.793 kb on - strand, within COO64_RS23110 at 44.793 kb on - strand, within COO64_RS23110 at 44.793 kb on - strand, within COO64_RS23110 at 44.793 kb on - strand, within COO64_RS23110 at 44.793 kb on - strand, within COO64_RS23110 at 44.840 kb on - strand, within COO64_RS23110 at 44.840 kb on - strand, within COO64_RS23110 at 44.873 kb on + strand, within COO64_RS23110 at 44.874 kb on - strand, within COO64_RS23110 at 44.874 kb on - strand, within COO64_RS23110 at 44.970 kb on + strand, within COO64_RS23110 at 44.970 kb on + strand, within COO64_RS23110 at 44.971 kb on - strand, within COO64_RS23110 at 44.971 kb on - strand, within COO64_RS23110 at 44.971 kb on - strand, within COO64_RS23110 at 44.971 kb on - strand, within COO64_RS23110 at 44.971 kb on - strand, within COO64_RS23110 at 44.972 kb on + strand, within COO64_RS23110 at 44.972 kb on + strand, within COO64_RS23110 at 44.972 kb on + strand, within COO64_RS23110 at 44.972 kb on + strand, within COO64_RS23110 at 44.972 kb on + strand, within COO64_RS23110 at 44.972 kb on + strand, within COO64_RS23110 at 44.972 kb on + strand, within COO64_RS23110 at 44.972 kb on + strand, within COO64_RS23110 at 44.972 kb on + strand, within COO64_RS23110 at 44.972 kb on + strand, within COO64_RS23110 at 44.973 kb on - strand, within COO64_RS23110 at 44.973 kb on - strand, within COO64_RS23110 at 44.973 kb on - strand, within COO64_RS23110 at 44.973 kb on - strand, within COO64_RS23110 at 44.973 kb on - strand, within COO64_RS23110 at 44.973 kb on - strand, within COO64_RS23110 at 44.973 kb on - strand, within COO64_RS23110 at 44.974 kb on + strand, within COO64_RS23110 at 44.974 kb on + strand, within COO64_RS23110 at 44.974 kb on + strand, within COO64_RS23110 at 44.974 kb on + strand, within COO64_RS23110 at 44.975 kb on - strand, within COO64_RS23110 at 44.975 kb on - strand, within COO64_RS23110 at 44.975 kb on - strand, within COO64_RS23110 at 44.975 kb on - strand, within COO64_RS23110 at 44.975 kb on - strand, within COO64_RS23110 at 44.975 kb on - strand, within COO64_RS23110 at 44.975 kb on - strand, within COO64_RS23110 at 44.975 kb on - strand, within COO64_RS23110 at 45.009 kb on - strand at 45.049 kb on + strand at 45.054 kb on + strand at 45.054 kb on + strand at 45.054 kb on + strand at 45.055 kb on - strand at 45.060 kb on + strand at 45.060 kb on + strand at 45.061 kb on - strand at 45.061 kb on - strand at 45.061 kb on - strand at 45.123 kb on + strand at 45.123 kb on + strand at 45.123 kb on + strand at 45.123 kb on + strand at 45.123 kb on + strand at 45.123 kb on + strand at 45.124 kb on - strand at 45.124 kb on - strand at 45.135 kb on + strand at 45.135 kb on + strand at 45.136 kb on - strand at 45.136 kb on - strand at 45.188 kb on - strand at 45.188 kb on - strand at 45.227 kb on + strand, within COO64_RS23115 at 45.227 kb on + strand, within COO64_RS23115 at 45.227 kb on + strand, within COO64_RS23115 at 45.227 kb on + strand, within COO64_RS23115 at 45.228 kb on - strand, within COO64_RS23115 at 45.228 kb on - strand, within COO64_RS23115 at 45.228 kb on - strand, within COO64_RS23115 at 45.233 kb on + strand, within COO64_RS23115 at 45.234 kb on - strand, within COO64_RS23115 at 45.234 kb on - strand, within COO64_RS23115 at 45.267 kb on + strand, within COO64_RS23115 at 45.267 kb on + strand, within COO64_RS23115 at 45.267 kb on + strand, within COO64_RS23115 at 45.267 kb on + strand, within COO64_RS23115 at 45.268 kb on - strand, within COO64_RS23115 at 45.268 kb on - strand, within COO64_RS23115 at 45.275 kb on + strand, within COO64_RS23115 at 45.276 kb on - strand, within COO64_RS23115 at 45.354 kb on + strand, within COO64_RS23115 at 45.354 kb on + strand, within COO64_RS23115 at 45.354 kb on + strand, within COO64_RS23115 at 45.355 kb on - strand, within COO64_RS23115 at 45.355 kb on - strand, within COO64_RS23115 at 45.362 kb on + strand, within COO64_RS23115 at 45.362 kb on + strand, within COO64_RS23115 at 45.362 kb on + strand, within COO64_RS23115 at 45.363 kb on - strand, within COO64_RS23115 at 45.363 kb on - strand, within COO64_RS23115 at 45.363 kb on - strand, within COO64_RS23115 at 45.363 kb on - strand, within COO64_RS23115 at 45.392 kb on - strand, within COO64_RS23115 at 45.433 kb on + strand, within COO64_RS23115 at 45.434 kb on - strand, within COO64_RS23115 at 45.434 kb on - strand, within COO64_RS23115 at 45.434 kb on - strand, within COO64_RS23115 at 45.434 kb on - strand, within COO64_RS23115 at 45.450 kb on + strand, within COO64_RS23115 at 45.451 kb on - strand, within COO64_RS23115 at 45.451 kb on - strand, within COO64_RS23115 at 45.507 kb on + strand, within COO64_RS23115 at 45.508 kb on - strand, within COO64_RS23115 at 45.508 kb on - strand, within COO64_RS23115 at 45.508 kb on - strand, within COO64_RS23115 at 45.596 kb on + strand, within COO64_RS23115 at 45.596 kb on + strand, within COO64_RS23115 at 45.597 kb on - strand, within COO64_RS23115 at 45.597 kb on - strand, within COO64_RS23115 at 45.622 kb on + strand, within COO64_RS23115 at 45.623 kb on - strand, within COO64_RS23115 at 45.623 kb on - strand, within COO64_RS23115
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB remove 43,418 + -1.0 43,418 + +0.5 43,431 + -0.0 43,451 - -1.1 43,495 + -0.4 43,495 + +0.0 43,600 - COO64_RS23100 0.21 -0.0 43,652 + COO64_RS23100 0.34 +0.0 43,671 - COO64_RS23100 0.39 -0.2 43,671 - COO64_RS23100 0.39 -0.1 43,755 + COO64_RS23100 0.60 -0.0 43,755 + COO64_RS23100 0.60 +0.3 43,755 + COO64_RS23100 0.60 -0.3 43,756 - COO64_RS23100 0.60 +0.0 43,757 + COO64_RS23100 0.60 +1.1 43,758 - COO64_RS23100 0.60 -0.4 43,758 - COO64_RS23100 0.60 +0.8 43,758 - COO64_RS23100 0.60 +1.0 43,861 - COO64_RS23100 0.86 -0.3 43,877 + -0.5 43,877 + -0.0 43,878 - -0.5 44,015 + +0.4 44,015 + -1.0 44,015 + -1.1 44,016 - +2.1 44,050 + +0.1 44,059 + +0.0 44,059 + -1.2 44,059 + -0.4 44,120 + -1.1 44,121 - -0.1 44,122 + -0.6 44,122 + +1.3 44,122 + -0.3 44,123 - +0.3 44,123 - +2.3 44,123 - +1.0 44,123 - -2.0 44,123 - +0.5 44,123 - -1.3 44,152 + -1.0 44,152 + -0.0 44,152 + +0.5 44,153 - -0.2 44,155 + -0.3 44,156 - -0.8 44,156 - -0.2 44,165 + -0.9 44,165 + +0.4 44,166 - +0.9 44,340 + -0.9 44,418 + COO64_RS23105 0.26 +0.0 44,418 + COO64_RS23105 0.26 -0.5 44,418 + COO64_RS23105 0.26 -0.0 44,418 + COO64_RS23105 0.26 -0.5 44,419 - COO64_RS23105 0.27 -1.2 44,626 + -0.1 44,627 - -0.3 44,648 + -0.5 44,649 - +0.8 44,649 - -0.1 44,649 - +0.5 44,740 + +1.3 44,740 + -0.4 44,741 - +1.0 44,741 - +0.2 44,748 - COO64_RS23110 0.12 -0.7 44,748 - COO64_RS23110 0.12 +0.9 44,792 + COO64_RS23110 0.26 -0.6 44,792 + COO64_RS23110 0.26 -1.0 44,792 + COO64_RS23110 0.26 +0.1 44,792 + COO64_RS23110 0.26 -0.5 44,792 + COO64_RS23110 0.26 -0.3 44,792 + COO64_RS23110 0.26 +0.6 44,792 + COO64_RS23110 0.26 -0.3 44,792 + COO64_RS23110 0.26 +0.3 44,792 + COO64_RS23110 0.26 +0.4 44,793 - COO64_RS23110 0.27 -0.2 44,793 - COO64_RS23110 0.27 +0.6 44,793 - COO64_RS23110 0.27 -0.1 44,793 - COO64_RS23110 0.27 -0.5 44,793 - COO64_RS23110 0.27 -0.4 44,840 - COO64_RS23110 0.42 -0.7 44,840 - COO64_RS23110 0.42 -1.0 44,873 + COO64_RS23110 0.52 +0.9 44,874 - COO64_RS23110 0.53 -0.5 44,874 - COO64_RS23110 0.53 -0.2 44,970 + COO64_RS23110 0.83 -0.4 44,970 + COO64_RS23110 0.83 +1.0 44,971 - COO64_RS23110 0.84 +0.1 44,971 - COO64_RS23110 0.84 -1.7 44,971 - COO64_RS23110 0.84 -0.7 44,971 - COO64_RS23110 0.84 -0.5 44,971 - COO64_RS23110 0.84 +0.6 44,972 + COO64_RS23110 0.84 +0.0 44,972 + COO64_RS23110 0.84 -0.6 44,972 + COO64_RS23110 0.84 -0.7 44,972 + COO64_RS23110 0.84 -0.7 44,972 + COO64_RS23110 0.84 -0.3 44,972 + COO64_RS23110 0.84 -0.2 44,972 + COO64_RS23110 0.84 +0.7 44,972 + COO64_RS23110 0.84 +0.3 44,972 + COO64_RS23110 0.84 +0.3 44,972 + COO64_RS23110 0.84 -0.8 44,973 - COO64_RS23110 0.84 -0.9 44,973 - COO64_RS23110 0.84 -1.0 44,973 - COO64_RS23110 0.84 +0.4 44,973 - COO64_RS23110 0.84 +0.4 44,973 - COO64_RS23110 0.84 -0.3 44,973 - COO64_RS23110 0.84 -0.3 44,973 - COO64_RS23110 0.84 -0.0 44,974 + COO64_RS23110 0.85 -0.5 44,974 + COO64_RS23110 0.85 -0.0 44,974 + COO64_RS23110 0.85 +0.3 44,974 + COO64_RS23110 0.85 +0.4 44,975 - COO64_RS23110 0.85 -0.5 44,975 - COO64_RS23110 0.85 -0.5 44,975 - COO64_RS23110 0.85 +1.7 44,975 - COO64_RS23110 0.85 +0.0 44,975 - COO64_RS23110 0.85 +0.6 44,975 - COO64_RS23110 0.85 +0.2 44,975 - COO64_RS23110 0.85 -1.1 44,975 - COO64_RS23110 0.85 -2.1 45,009 - -2.1 45,049 + -0.3 45,054 + -1.7 45,054 + -0.1 45,054 + -1.4 45,055 - -0.6 45,060 + -0.2 45,060 + -1.0 45,061 - -0.5 45,061 - +0.1 45,061 - -0.2 45,123 + -0.5 45,123 + +0.5 45,123 + +0.0 45,123 + +0.1 45,123 + +0.1 45,123 + +0.4 45,124 - +1.2 45,124 - -2.5 45,135 + -0.5 45,135 + -0.9 45,136 - -0.1 45,136 - -1.5 45,188 - -1.2 45,188 - -1.1 45,227 + COO64_RS23115 0.12 +0.3 45,227 + COO64_RS23115 0.12 +0.4 45,227 + COO64_RS23115 0.12 +0.1 45,227 + COO64_RS23115 0.12 +0.4 45,228 - COO64_RS23115 0.12 +0.1 45,228 - COO64_RS23115 0.12 +0.3 45,228 - COO64_RS23115 0.12 -1.5 45,233 + COO64_RS23115 0.13 -0.3 45,234 - COO64_RS23115 0.13 -0.0 45,234 - COO64_RS23115 0.13 +0.2 45,267 + COO64_RS23115 0.17 -0.0 45,267 + COO64_RS23115 0.17 +0.4 45,267 + COO64_RS23115 0.17 +0.7 45,267 + COO64_RS23115 0.17 -0.6 45,268 - COO64_RS23115 0.17 +0.4 45,268 - COO64_RS23115 0.17 -0.1 45,275 + COO64_RS23115 0.18 +0.1 45,276 - COO64_RS23115 0.18 -0.2 45,354 + COO64_RS23115 0.27 -0.4 45,354 + COO64_RS23115 0.27 -0.4 45,354 + COO64_RS23115 0.27 -0.4 45,355 - COO64_RS23115 0.27 +1.3 45,355 - COO64_RS23115 0.27 +0.6 45,362 + COO64_RS23115 0.28 +0.6 45,362 + COO64_RS23115 0.28 -0.5 45,362 + COO64_RS23115 0.28 -1.3 45,363 - COO64_RS23115 0.28 +1.7 45,363 - COO64_RS23115 0.28 -1.3 45,363 - COO64_RS23115 0.28 -1.1 45,363 - COO64_RS23115 0.28 -0.2 45,392 - COO64_RS23115 0.32 -0.2 45,433 + COO64_RS23115 0.37 -0.4 45,434 - COO64_RS23115 0.37 -0.5 45,434 - COO64_RS23115 0.37 -0.5 45,434 - COO64_RS23115 0.37 -0.2 45,434 - COO64_RS23115 0.37 -1.6 45,450 + COO64_RS23115 0.39 -1.1 45,451 - COO64_RS23115 0.39 -1.7 45,451 - COO64_RS23115 0.39 -0.1 45,507 + COO64_RS23115 0.46 +0.7 45,508 - COO64_RS23115 0.46 -0.2 45,508 - COO64_RS23115 0.46 +0.4 45,508 - COO64_RS23115 0.46 +0.0 45,596 + COO64_RS23115 0.57 +0.7 45,596 + COO64_RS23115 0.57 -2.0 45,597 - COO64_RS23115 0.57 +0.3 45,597 - COO64_RS23115 0.57 -0.6 45,622 + COO64_RS23115 0.60 -0.7 45,623 - COO64_RS23115 0.60 -0.5 45,623 - COO64_RS23115 0.60 -0.7
Or see this region's nucleotide sequence