Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS22810

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS22800 and COO64_RS22805 overlap by 1 nucleotidesCOO64_RS22805 and COO64_RS22810 overlap by 4 nucleotidesCOO64_RS22810 and rfaP overlap by 1 nucleotidesrfaP and COO64_RS22820 overlap by 4 nucleotides COO64_RS22800: COO64_RS22800 - lipopolysaccharide kinase InaA family protein, at 103,720 to 105,162 _RS22800 COO64_RS22805: COO64_RS22805 - lipopolysaccharide kinase InaA family protein, at 105,162 to 105,914 _RS22805 COO64_RS22810: COO64_RS22810 - lipopolysaccharide kinase InaA family protein, at 105,911 to 106,645 _RS22810 COO64_RS22815: rfaP - lipopolysaccharide core heptose(I) kinase RfaP, at 106,645 to 107,451 rfaP COO64_RS22820: COO64_RS22820 - glycosyltransferase family 4 protein, at 107,448 to 108,572 _RS22820 Position (kb) 105 106 107Strain fitness (log2 ratio) -2 -1 0 1at 105.213 kb on - strandat 105.213 kb on - strandat 105.248 kb on - strand, within COO64_RS22805at 105.425 kb on - strand, within COO64_RS22805at 105.425 kb on - strand, within COO64_RS22805at 105.425 kb on - strand, within COO64_RS22805at 105.462 kb on - strand, within COO64_RS22805at 105.462 kb on - strand, within COO64_RS22805at 105.620 kb on - strand, within COO64_RS22805at 105.620 kb on - strand, within COO64_RS22805at 105.666 kb on - strand, within COO64_RS22805at 105.749 kb on - strand, within COO64_RS22805at 105.749 kb on - strand, within COO64_RS22805at 105.749 kb on - strand, within COO64_RS22805at 105.749 kb on - strand, within COO64_RS22805at 105.752 kb on - strand, within COO64_RS22805at 105.752 kb on - strand, within COO64_RS22805at 105.752 kb on - strand, within COO64_RS22805at 105.779 kb on - strand, within COO64_RS22805at 105.999 kb on + strand, within COO64_RS22810at 105.999 kb on + strand, within COO64_RS22810at 106.000 kb on - strand, within COO64_RS22810at 106.032 kb on + strand, within COO64_RS22810at 106.032 kb on + strand, within COO64_RS22810at 106.032 kb on + strand, within COO64_RS22810at 106.033 kb on - strand, within COO64_RS22810at 106.033 kb on - strand, within COO64_RS22810at 106.033 kb on - strand, within COO64_RS22810at 106.456 kb on - strand, within COO64_RS22810at 106.484 kb on - strand, within COO64_RS22810at 106.498 kb on - strand, within COO64_RS22810at 106.498 kb on - strand, within COO64_RS22810at 106.498 kb on - strand, within COO64_RS22810at 106.501 kb on - strand, within COO64_RS22810at 106.501 kb on - strand, within COO64_RS22810at 106.501 kb on - strand, within COO64_RS22810at 106.501 kb on - strand, within COO64_RS22810at 106.501 kb on - strand, within COO64_RS22810at 106.501 kb on - strand, within COO64_RS22810at 106.501 kb on - strand, within COO64_RS22810at 106.501 kb on - strand, within COO64_RS22810at 106.672 kb on - strandat 106.672 kb on - strandat 106.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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105,213 - -0.7
105,213 - -0.2
105,248 - COO64_RS22805 0.11 +0.1
105,425 - COO64_RS22805 0.35 -0.6
105,425 - COO64_RS22805 0.35 -0.3
105,425 - COO64_RS22805 0.35 -0.5
105,462 - COO64_RS22805 0.40 +1.7
105,462 - COO64_RS22805 0.40 -0.1
105,620 - COO64_RS22805 0.61 +0.1
105,620 - COO64_RS22805 0.61 -0.3
105,666 - COO64_RS22805 0.67 +1.7
105,749 - COO64_RS22805 0.78 +0.0
105,749 - COO64_RS22805 0.78 -0.4
105,749 - COO64_RS22805 0.78 -0.6
105,749 - COO64_RS22805 0.78 -0.3
105,752 - COO64_RS22805 0.78 +0.5
105,752 - COO64_RS22805 0.78 +0.1
105,752 - COO64_RS22805 0.78 -0.5
105,779 - COO64_RS22805 0.82 +0.1
105,999 + COO64_RS22810 0.12 +1.7
105,999 + COO64_RS22810 0.12 +0.5
106,000 - COO64_RS22810 0.12 -0.5
106,032 + COO64_RS22810 0.16 +0.5
106,032 + COO64_RS22810 0.16 +0.1
106,032 + COO64_RS22810 0.16 +0.5
106,033 - COO64_RS22810 0.17 +0.3
106,033 - COO64_RS22810 0.17 -0.7
106,033 - COO64_RS22810 0.17 +0.1
106,456 - COO64_RS22810 0.74 -0.6
106,484 - COO64_RS22810 0.78 -1.9
106,498 - COO64_RS22810 0.80 +0.5
106,498 - COO64_RS22810 0.80 -0.5
106,498 - COO64_RS22810 0.80 +0.7
106,501 - COO64_RS22810 0.80 -1.5
106,501 - COO64_RS22810 0.80 -0.7
106,501 - COO64_RS22810 0.80 +0.2
106,501 - COO64_RS22810 0.80 -1.0
106,501 - COO64_RS22810 0.80 +0.3
106,501 - COO64_RS22810 0.80 +0.3
106,501 - COO64_RS22810 0.80 +0.2
106,501 - COO64_RS22810 0.80 -0.7
106,672 - +1.1
106,672 - -1.8
106,672 - +0.4

Or see this region's nucleotide sequence