Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS22030

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS22025 and COO64_RS22030 are separated by 35 nucleotidesCOO64_RS22030 and COO64_RS22035 are separated by 3 nucleotides COO64_RS22025: COO64_RS22025 - alpha/beta hydrolase, at 187,651 to 188,595 _RS22025 COO64_RS22030: COO64_RS22030 - MaoC family dehydratase, at 188,631 to 189,101 _RS22030 COO64_RS22035: COO64_RS22035 - RNA polymerase sigma factor, at 189,105 to 190,340 _RS22035 Position (kb) 188 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1at 187.699 kb on + strandat 187.700 kb on - strandat 187.700 kb on - strandat 187.700 kb on - strandat 187.700 kb on - strandat 187.705 kb on + strandat 187.706 kb on - strandat 187.816 kb on + strand, within COO64_RS22025at 187.816 kb on + strand, within COO64_RS22025at 187.874 kb on + strand, within COO64_RS22025at 187.875 kb on - strand, within COO64_RS22025at 187.999 kb on + strand, within COO64_RS22025at 187.999 kb on + strand, within COO64_RS22025at 187.999 kb on + strand, within COO64_RS22025at 187.999 kb on + strand, within COO64_RS22025at 187.999 kb on + strand, within COO64_RS22025at 187.999 kb on + strand, within COO64_RS22025at 187.999 kb on + strand, within COO64_RS22025at 187.999 kb on + strand, within COO64_RS22025at 187.999 kb on + strand, within COO64_RS22025at 187.999 kb on + strand, within COO64_RS22025at 187.999 kb on + strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.000 kb on - strand, within COO64_RS22025at 188.001 kb on + strand, within COO64_RS22025at 188.251 kb on + strand, within COO64_RS22025at 188.251 kb on + strand, within COO64_RS22025at 188.251 kb on + strand, within COO64_RS22025at 188.251 kb on + strand, within COO64_RS22025at 188.251 kb on + strand, within COO64_RS22025at 188.251 kb on + strand, within COO64_RS22025at 188.251 kb on + strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.252 kb on - strand, within COO64_RS22025at 188.378 kb on + strand, within COO64_RS22025at 188.378 kb on + strand, within COO64_RS22025at 188.465 kb on + strand, within COO64_RS22025at 188.465 kb on + strand, within COO64_RS22025at 188.465 kb on + strand, within COO64_RS22025at 188.466 kb on - strand, within COO64_RS22025at 188.466 kb on - strand, within COO64_RS22025at 188.466 kb on - strand, within COO64_RS22025at 188.466 kb on - strand, within COO64_RS22025at 188.466 kb on - strand, within COO64_RS22025at 188.613 kb on + strandat 188.613 kb on + strandat 188.613 kb on + strandat 188.614 kb on - strandat 188.614 kb on - strandat 188.614 kb on - strandat 188.614 kb on - strandat 188.655 kb on + strandat 188.877 kb on + strand, within COO64_RS22030at 188.877 kb on + strand, within COO64_RS22030at 188.877 kb on + strand, within COO64_RS22030at 188.878 kb on - strand, within COO64_RS22030at 188.878 kb on - strand, within COO64_RS22030at 189.017 kb on - strand, within COO64_RS22030at 189.017 kb on - strand, within COO64_RS22030at 189.208 kb on - strandat 189.208 kb on - strandat 189.250 kb on + strand, within COO64_RS22035at 189.250 kb on + strand, within COO64_RS22035at 189.250 kb on + strand, within COO64_RS22035at 189.251 kb on - strand, within COO64_RS22035at 189.251 kb on - strand, within COO64_RS22035at 189.251 kb on - strand, within COO64_RS22035at 189.385 kb on + strand, within COO64_RS22035at 189.385 kb on + strand, within COO64_RS22035at 189.385 kb on + strand, within COO64_RS22035at 189.386 kb on - strand, within COO64_RS22035at 189.386 kb on - strand, within COO64_RS22035at 189.386 kb on - strand, within COO64_RS22035at 189.467 kb on + strand, within COO64_RS22035at 189.467 kb on + strand, within COO64_RS22035at 189.467 kb on + strand, within COO64_RS22035at 189.467 kb on + strand, within COO64_RS22035at 189.467 kb on + strand, within COO64_RS22035at 189.467 kb on + strand, within COO64_RS22035at 189.467 kb on + strand, within COO64_RS22035at 189.467 kb on + strand, within COO64_RS22035at 189.467 kb on + strand, within COO64_RS22035at 189.467 kb on + strand, within COO64_RS22035at 189.468 kb on - strand, within COO64_RS22035at 189.468 kb on - strand, within COO64_RS22035at 189.468 kb on - strand, within COO64_RS22035at 189.468 kb on - strand, within COO64_RS22035at 189.468 kb on - strand, within COO64_RS22035at 189.468 kb on - strand, within COO64_RS22035at 189.468 kb on - strand, within COO64_RS22035at 189.468 kb on - strand, within COO64_RS22035at 189.468 kb on - strand, within COO64_RS22035at 189.468 kb on - strand, within COO64_RS22035at 189.469 kb on + strand, within COO64_RS22035at 189.469 kb on + strand, within COO64_RS22035at 189.469 kb on + strand, within COO64_RS22035at 189.469 kb on + strand, within COO64_RS22035at 189.470 kb on - strand, within COO64_RS22035at 189.745 kb on + strand, within COO64_RS22035at 189.746 kb on - strand, within COO64_RS22035at 189.746 kb on - strand, within COO64_RS22035at 189.766 kb on + strand, within COO64_RS22035at 189.766 kb on + strand, within COO64_RS22035at 189.766 kb on + strand, within COO64_RS22035at 189.766 kb on + strand, within COO64_RS22035at 189.767 kb on - strand, within COO64_RS22035at 189.767 kb on - strand, within COO64_RS22035at 189.785 kb on + strand, within COO64_RS22035at 189.826 kb on + strand, within COO64_RS22035at 189.869 kb on + strand, within COO64_RS22035at 189.869 kb on + strand, within COO64_RS22035at 189.869 kb on + strand, within COO64_RS22035at 189.869 kb on + strand, within COO64_RS22035at 189.869 kb on + strand, within COO64_RS22035at 189.869 kb on + strand, within COO64_RS22035at 189.870 kb on - strand, within COO64_RS22035at 189.870 kb on - strand, within COO64_RS22035at 189.870 kb on - strand, within COO64_RS22035at 189.870 kb on - strand, within COO64_RS22035at 189.870 kb on - strand, within COO64_RS22035at 189.870 kb on - strand, within COO64_RS22035at 189.870 kb on - strand, within COO64_RS22035at 189.870 kb on - strand, within COO64_RS22035

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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187,699 + +0.3
187,700 - +0.3
187,700 - -0.3
187,700 - -0.1
187,700 - +0.0
187,705 + -1.1
187,706 - +0.2
187,816 + COO64_RS22025 0.17 -0.4
187,816 + COO64_RS22025 0.17 -1.1
187,874 + COO64_RS22025 0.24 -1.8
187,875 - COO64_RS22025 0.24 +0.0
187,999 + COO64_RS22025 0.37 -0.5
187,999 + COO64_RS22025 0.37 +0.4
187,999 + COO64_RS22025 0.37 +0.4
187,999 + COO64_RS22025 0.37 +1.6
187,999 + COO64_RS22025 0.37 +1.3
187,999 + COO64_RS22025 0.37 -0.6
187,999 + COO64_RS22025 0.37 +0.6
187,999 + COO64_RS22025 0.37 -1.2
187,999 + COO64_RS22025 0.37 +0.1
187,999 + COO64_RS22025 0.37 -0.5
187,999 + COO64_RS22025 0.37 -1.2
188,000 - COO64_RS22025 0.37 +0.2
188,000 - COO64_RS22025 0.37 -1.1
188,000 - COO64_RS22025 0.37 -0.8
188,000 - COO64_RS22025 0.37 -0.6
188,000 - COO64_RS22025 0.37 -2.5
188,000 - COO64_RS22025 0.37 -1.1
188,000 - COO64_RS22025 0.37 -0.7
188,000 - COO64_RS22025 0.37 +0.4
188,000 - COO64_RS22025 0.37 +0.8
188,000 - COO64_RS22025 0.37 +0.7
188,000 - COO64_RS22025 0.37 -0.5
188,000 - COO64_RS22025 0.37 +0.4
188,000 - COO64_RS22025 0.37 -0.7
188,000 - COO64_RS22025 0.37 -1.2
188,000 - COO64_RS22025 0.37 +1.2
188,001 + COO64_RS22025 0.37 +0.9
188,251 + COO64_RS22025 0.63 +0.4
188,251 + COO64_RS22025 0.63 -1.5
188,251 + COO64_RS22025 0.63 -0.6
188,251 + COO64_RS22025 0.63 -0.6
188,251 + COO64_RS22025 0.63 -1.0
188,251 + COO64_RS22025 0.63 +1.7
188,251 + COO64_RS22025 0.63 +0.8
188,252 - COO64_RS22025 0.64 +0.3
188,252 - COO64_RS22025 0.64 -0.6
188,252 - COO64_RS22025 0.64 -0.1
188,252 - COO64_RS22025 0.64 +0.1
188,252 - COO64_RS22025 0.64 -0.3
188,252 - COO64_RS22025 0.64 -0.3
188,252 - COO64_RS22025 0.64 +0.6
188,252 - COO64_RS22025 0.64 -0.1
188,252 - COO64_RS22025 0.64 +0.4
188,252 - COO64_RS22025 0.64 +0.4
188,252 - COO64_RS22025 0.64 +0.0
188,252 - COO64_RS22025 0.64 +0.3
188,252 - COO64_RS22025 0.64 -1.6
188,252 - COO64_RS22025 0.64 +0.3
188,252 - COO64_RS22025 0.64 -0.6
188,252 - COO64_RS22025 0.64 -0.9
188,252 - COO64_RS22025 0.64 -0.9
188,378 + COO64_RS22025 0.77 +0.0
188,378 + COO64_RS22025 0.77 +1.7
188,465 + COO64_RS22025 0.86 -0.5
188,465 + COO64_RS22025 0.86 +0.7
188,465 + COO64_RS22025 0.86 +0.7
188,466 - COO64_RS22025 0.86 -2.4
188,466 - COO64_RS22025 0.86 +0.1
188,466 - COO64_RS22025 0.86 +0.8
188,466 - COO64_RS22025 0.86 +0.4
188,466 - COO64_RS22025 0.86 -1.0
188,613 + -0.1
188,613 + +0.8
188,613 + +0.9
188,614 - +0.4
188,614 - -0.7
188,614 - +0.4
188,614 - +0.5
188,655 + -3.3
188,877 + COO64_RS22030 0.52 -0.4
188,877 + COO64_RS22030 0.52 -1.4
188,877 + COO64_RS22030 0.52 -0.6
188,878 - COO64_RS22030 0.52 -1.4
188,878 - COO64_RS22030 0.52 -0.2
189,017 - COO64_RS22030 0.82 +0.5
189,017 - COO64_RS22030 0.82 -1.1
189,208 - -0.9
189,208 - -0.2
189,250 + COO64_RS22035 0.12 -0.6
189,250 + COO64_RS22035 0.12 -1.5
189,250 + COO64_RS22035 0.12 +0.4
189,251 - COO64_RS22035 0.12 -0.5
189,251 - COO64_RS22035 0.12 -0.1
189,251 - COO64_RS22035 0.12 -0.2
189,385 + COO64_RS22035 0.23 -0.5
189,385 + COO64_RS22035 0.23 -0.1
189,385 + COO64_RS22035 0.23 +0.4
189,386 - COO64_RS22035 0.23 +0.8
189,386 - COO64_RS22035 0.23 -1.9
189,386 - COO64_RS22035 0.23 +0.8
189,467 + COO64_RS22035 0.29 -0.1
189,467 + COO64_RS22035 0.29 -1.1
189,467 + COO64_RS22035 0.29 +0.7
189,467 + COO64_RS22035 0.29 +0.4
189,467 + COO64_RS22035 0.29 +0.4
189,467 + COO64_RS22035 0.29 +0.0
189,467 + COO64_RS22035 0.29 -1.8
189,467 + COO64_RS22035 0.29 -0.3
189,467 + COO64_RS22035 0.29 -1.4
189,467 + COO64_RS22035 0.29 +0.2
189,468 - COO64_RS22035 0.29 -0.7
189,468 - COO64_RS22035 0.29 +0.3
189,468 - COO64_RS22035 0.29 +0.3
189,468 - COO64_RS22035 0.29 -0.1
189,468 - COO64_RS22035 0.29 -0.5
189,468 - COO64_RS22035 0.29 +0.6
189,468 - COO64_RS22035 0.29 +0.9
189,468 - COO64_RS22035 0.29 -0.2
189,468 - COO64_RS22035 0.29 -1.1
189,468 - COO64_RS22035 0.29 -0.4
189,469 + COO64_RS22035 0.29 -0.0
189,469 + COO64_RS22035 0.29 -0.1
189,469 + COO64_RS22035 0.29 -0.2
189,469 + COO64_RS22035 0.29 -0.3
189,470 - COO64_RS22035 0.30 +0.1
189,745 + COO64_RS22035 0.52 -0.1
189,746 - COO64_RS22035 0.52 -1.1
189,746 - COO64_RS22035 0.52 -1.7
189,766 + COO64_RS22035 0.53 +1.0
189,766 + COO64_RS22035 0.53 -0.4
189,766 + COO64_RS22035 0.53 -0.1
189,766 + COO64_RS22035 0.53 +0.2
189,767 - COO64_RS22035 0.54 -0.8
189,767 - COO64_RS22035 0.54 -0.2
189,785 + COO64_RS22035 0.55 +0.4
189,826 + COO64_RS22035 0.58 +0.0
189,869 + COO64_RS22035 0.62 -0.8
189,869 + COO64_RS22035 0.62 +0.3
189,869 + COO64_RS22035 0.62 -0.2
189,869 + COO64_RS22035 0.62 -0.2
189,869 + COO64_RS22035 0.62 +0.5
189,869 + COO64_RS22035 0.62 +0.3
189,870 - COO64_RS22035 0.62 -0.1
189,870 - COO64_RS22035 0.62 -1.6
189,870 - COO64_RS22035 0.62 +0.6
189,870 - COO64_RS22035 0.62 +0.2
189,870 - COO64_RS22035 0.62 -0.1
189,870 - COO64_RS22035 0.62 +0.0
189,870 - COO64_RS22035 0.62 -0.9
189,870 - COO64_RS22035 0.62 +0.9

Or see this region's nucleotide sequence