Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS20635

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS20630 and COO64_RS20635 are separated by 286 nucleotidesCOO64_RS20635 and COO64_RS20640 are separated by 187 nucleotides COO64_RS20630: COO64_RS20630 - glycosyl hydrolase family 18 protein, at 25,955 to 27,421 _RS20630 COO64_RS20635: COO64_RS20635 - CAP domain-containing protein, at 27,708 to 28,568 _RS20635 COO64_RS20640: COO64_RS20640 - dTMP kinase, at 28,756 to 29,367 _RS20640 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 26.793 kb on + strand, within COO64_RS20630at 26.793 kb on + strand, within COO64_RS20630at 26.794 kb on - strand, within COO64_RS20630at 26.794 kb on - strand, within COO64_RS20630at 26.794 kb on - strand, within COO64_RS20630at 26.796 kb on + strand, within COO64_RS20630at 26.797 kb on - strand, within COO64_RS20630at 26.797 kb on - strand, within COO64_RS20630at 26.797 kb on - strand, within COO64_RS20630at 26.797 kb on - strand, within COO64_RS20630at 26.817 kb on + strand, within COO64_RS20630at 26.817 kb on + strand, within COO64_RS20630at 26.818 kb on - strand, within COO64_RS20630at 26.818 kb on - strand, within COO64_RS20630at 26.821 kb on - strand, within COO64_RS20630at 26.850 kb on + strand, within COO64_RS20630at 26.851 kb on - strand, within COO64_RS20630at 26.851 kb on - strand, within COO64_RS20630at 26.851 kb on - strand, within COO64_RS20630at 26.922 kb on + strand, within COO64_RS20630at 26.922 kb on + strand, within COO64_RS20630at 26.922 kb on + strand, within COO64_RS20630at 26.923 kb on - strand, within COO64_RS20630at 27.149 kb on + strand, within COO64_RS20630at 27.149 kb on + strand, within COO64_RS20630at 27.183 kb on + strand, within COO64_RS20630at 27.184 kb on - strand, within COO64_RS20630at 27.184 kb on - strand, within COO64_RS20630at 27.196 kb on + strand, within COO64_RS20630at 27.202 kb on + strand, within COO64_RS20630at 27.202 kb on + strand, within COO64_RS20630at 27.202 kb on + strand, within COO64_RS20630at 27.202 kb on + strand, within COO64_RS20630at 27.203 kb on - strand, within COO64_RS20630at 27.224 kb on + strand, within COO64_RS20630at 27.241 kb on - strand, within COO64_RS20630at 27.251 kb on + strand, within COO64_RS20630at 27.251 kb on + strand, within COO64_RS20630at 27.251 kb on + strand, within COO64_RS20630at 27.252 kb on - strand, within COO64_RS20630at 27.252 kb on - strand, within COO64_RS20630at 27.291 kb on + strandat 27.319 kb on + strandat 27.319 kb on + strandat 27.320 kb on - strandat 27.358 kb on + strandat 27.359 kb on - strandat 27.359 kb on - strandat 27.384 kb on - strandat 27.428 kb on - strandat 27.428 kb on - strandat 27.443 kb on + strandat 27.444 kb on - strandat 27.454 kb on + strandat 27.455 kb on - strandat 27.455 kb on - strandat 27.455 kb on - strandat 27.551 kb on + strandat 27.609 kb on + strandat 27.632 kb on + strandat 27.680 kb on - strandat 27.736 kb on + strandat 27.737 kb on - strandat 27.769 kb on + strandat 27.770 kb on - strandat 27.964 kb on + strand, within COO64_RS20635at 27.964 kb on + strand, within COO64_RS20635at 27.965 kb on - strand, within COO64_RS20635at 27.965 kb on - strand, within COO64_RS20635at 28.237 kb on + strand, within COO64_RS20635at 28.355 kb on + strand, within COO64_RS20635at 28.355 kb on + strand, within COO64_RS20635at 28.515 kb on + strandat 28.516 kb on - strandat 28.517 kb on + strandat 28.517 kb on + strandat 28.517 kb on + strandat 28.517 kb on + strandat 28.518 kb on - strandat 28.518 kb on - strandat 28.518 kb on - strandat 28.518 kb on - strandat 28.671 kb on + strandat 28.711 kb on + strandat 28.712 kb on - strandat 28.712 kb on - strandat 28.723 kb on + strandat 28.739 kb on - strandat 28.739 kb on - strandat 28.770 kb on + strandat 28.770 kb on + strandat 28.771 kb on - strandat 28.772 kb on + strandat 28.773 kb on - strandat 28.773 kb on - strandat 28.882 kb on - strand, within COO64_RS20640at 28.882 kb on - strand, within COO64_RS20640at 28.896 kb on + strand, within COO64_RS20640at 28.896 kb on + strand, within COO64_RS20640at 28.896 kb on + strand, within COO64_RS20640at 29.020 kb on + strand, within COO64_RS20640at 29.021 kb on - strand, within COO64_RS20640at 29.021 kb on - strand, within COO64_RS20640at 29.137 kb on - strand, within COO64_RS20640at 29.137 kb on - strand, within COO64_RS20640at 29.143 kb on - strand, within COO64_RS20640at 29.288 kb on - strand, within COO64_RS20640at 29.320 kb on - strandat 29.386 kb on + strandat 29.386 kb on + strandat 29.387 kb on - strandat 29.388 kb on + strandat 29.388 kb on + strandat 29.388 kb on + strandat 29.389 kb on - strandat 29.389 kb on - strandat 29.482 kb on + strandat 29.483 kb on - strandat 29.529 kb on + strandat 29.529 kb on + strandat 29.566 kb on + strandat 29.566 kb on + strandat 29.566 kb on + strandat 29.566 kb on + strandat 29.566 kb on + strandat 29.567 kb on - strandat 29.567 kb on - strandat 29.567 kb on - strandat 29.567 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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26,793 + COO64_RS20630 0.57 +0.1
26,793 + COO64_RS20630 0.57 +0.6
26,794 - COO64_RS20630 0.57 -0.1
26,794 - COO64_RS20630 0.57 -0.2
26,794 - COO64_RS20630 0.57 +0.2
26,796 + COO64_RS20630 0.57 -0.6
26,797 - COO64_RS20630 0.57 +0.0
26,797 - COO64_RS20630 0.57 -0.0
26,797 - COO64_RS20630 0.57 -1.3
26,797 - COO64_RS20630 0.57 -0.4
26,817 + COO64_RS20630 0.59 +0.4
26,817 + COO64_RS20630 0.59 +0.4
26,818 - COO64_RS20630 0.59 +2.0
26,818 - COO64_RS20630 0.59 +1.5
26,821 - COO64_RS20630 0.59 -0.5
26,850 + COO64_RS20630 0.61 -0.2
26,851 - COO64_RS20630 0.61 +0.9
26,851 - COO64_RS20630 0.61 -1.0
26,851 - COO64_RS20630 0.61 -0.5
26,922 + COO64_RS20630 0.66 +0.8
26,922 + COO64_RS20630 0.66 +0.4
26,922 + COO64_RS20630 0.66 -1.0
26,923 - COO64_RS20630 0.66 -0.1
27,149 + COO64_RS20630 0.81 -0.4
27,149 + COO64_RS20630 0.81 +0.0
27,183 + COO64_RS20630 0.84 +0.5
27,184 - COO64_RS20630 0.84 +0.8
27,184 - COO64_RS20630 0.84 +0.9
27,196 + COO64_RS20630 0.85 +0.3
27,202 + COO64_RS20630 0.85 -0.6
27,202 + COO64_RS20630 0.85 -0.2
27,202 + COO64_RS20630 0.85 +0.6
27,202 + COO64_RS20630 0.85 -0.1
27,203 - COO64_RS20630 0.85 +0.6
27,224 + COO64_RS20630 0.87 +0.6
27,241 - COO64_RS20630 0.88 -1.0
27,251 + COO64_RS20630 0.88 +0.6
27,251 + COO64_RS20630 0.88 -2.3
27,251 + COO64_RS20630 0.88 +0.2
27,252 - COO64_RS20630 0.88 +1.0
27,252 - COO64_RS20630 0.88 -1.0
27,291 + -1.3
27,319 + +0.2
27,319 + -0.0
27,320 - +0.8
27,358 + +0.2
27,359 - -1.3
27,359 - -0.1
27,384 - -1.4
27,428 - -0.8
27,428 - +0.2
27,443 + +0.4
27,444 - +0.2
27,454 + -0.4
27,455 - -0.8
27,455 - +0.2
27,455 - -0.8
27,551 + -0.2
27,609 + +0.5
27,632 + +0.6
27,680 - +0.5
27,736 + -0.7
27,737 - -1.8
27,769 + -0.2
27,770 - -0.3
27,964 + COO64_RS20635 0.30 -0.5
27,964 + COO64_RS20635 0.30 -0.1
27,965 - COO64_RS20635 0.30 -0.6
27,965 - COO64_RS20635 0.30 -0.7
28,237 + COO64_RS20635 0.61 -2.6
28,355 + COO64_RS20635 0.75 -0.5
28,355 + COO64_RS20635 0.75 -0.6
28,515 + +0.8
28,516 - -1.2
28,517 + -0.0
28,517 + +0.2
28,517 + +1.1
28,517 + +0.4
28,518 - -0.0
28,518 - +0.9
28,518 - -1.2
28,518 - +0.3
28,671 + +0.0
28,711 + +0.1
28,712 - -0.4
28,712 - +0.2
28,723 + +0.4
28,739 - -0.2
28,739 - +0.4
28,770 + +1.1
28,770 + +1.9
28,771 - -0.7
28,772 + +0.0
28,773 - +0.1
28,773 - -1.2
28,882 - COO64_RS20640 0.21 -0.7
28,882 - COO64_RS20640 0.21 +0.4
28,896 + COO64_RS20640 0.23 -0.4
28,896 + COO64_RS20640 0.23 +1.2
28,896 + COO64_RS20640 0.23 +0.5
29,020 + COO64_RS20640 0.43 -0.2
29,021 - COO64_RS20640 0.43 -0.1
29,021 - COO64_RS20640 0.43 -0.4
29,137 - COO64_RS20640 0.62 +0.8
29,137 - COO64_RS20640 0.62 -1.2
29,143 - COO64_RS20640 0.63 +0.6
29,288 - COO64_RS20640 0.87 -0.4
29,320 - -1.8
29,386 + -0.3
29,386 + +0.0
29,387 - +0.3
29,388 + -1.0
29,388 + +1.1
29,388 + -1.0
29,389 - +0.6
29,389 - +0.2
29,482 + -0.2
29,483 - -1.3
29,529 + +0.4
29,529 + -0.3
29,566 + +0.2
29,566 + -0.2
29,566 + +1.8
29,566 + -0.4
29,566 + -1.4
29,567 - +1.0
29,567 - +0.3
29,567 - -0.2
29,567 - -1.0

Or see this region's nucleotide sequence