Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS20350

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS20340 and COO64_RS20345 overlap by 4 nucleotidesCOO64_RS20345 and COO64_RS20350 overlap by 4 nucleotidesCOO64_RS20350 and COO64_RS27360 overlap by 4 nucleotidesCOO64_RS27360 and COO64_RS20365 overlap by 20 nucleotides COO64_RS20340: COO64_RS20340 - Rha family transcriptional regulator, at 162,979 to 163,704 _RS20340 COO64_RS20345: COO64_RS20345 - hypothetical protein, at 163,701 to 164,303 _RS20345 COO64_RS20350: COO64_RS20350 - hypothetical protein, at 164,300 to 164,527 _RS20350 COO64_RS27360: COO64_RS27360 - hypothetical protein, at 164,524 to 165,309 _RS27360 COO64_RS20365: COO64_RS20365 - ATP-binding protein, at 165,290 to 166,093 _RS20365 Position (kb) 164 165Strain fitness (log2 ratio) -2 -1 0 1 2at 163.343 kb on + strand, within COO64_RS20340at 163.343 kb on + strand, within COO64_RS20340at 163.344 kb on - strand, within COO64_RS20340at 163.344 kb on - strand, within COO64_RS20340at 163.486 kb on + strand, within COO64_RS20340at 163.486 kb on + strand, within COO64_RS20340at 163.486 kb on + strand, within COO64_RS20340at 163.486 kb on + strand, within COO64_RS20340at 163.487 kb on - strand, within COO64_RS20340at 163.487 kb on - strand, within COO64_RS20340at 163.516 kb on - strand, within COO64_RS20340at 163.780 kb on + strand, within COO64_RS20345at 163.780 kb on + strand, within COO64_RS20345at 163.781 kb on - strand, within COO64_RS20345at 163.781 kb on - strand, within COO64_RS20345at 163.781 kb on - strand, within COO64_RS20345at 163.781 kb on - strand, within COO64_RS20345at 163.929 kb on + strand, within COO64_RS20345at 163.930 kb on - strand, within COO64_RS20345at 164.100 kb on + strand, within COO64_RS20345at 164.100 kb on + strand, within COO64_RS20345at 164.101 kb on - strand, within COO64_RS20345at 164.376 kb on - strand, within COO64_RS20350at 164.376 kb on - strand, within COO64_RS20350at 164.420 kb on + strand, within COO64_RS20350at 164.420 kb on + strand, within COO64_RS20350at 164.484 kb on - strand, within COO64_RS20350at 164.564 kb on - strandat 164.564 kb on - strandat 164.564 kb on - strandat 164.758 kb on + strand, within COO64_RS27360at 164.759 kb on - strand, within COO64_RS27360at 164.812 kb on + strand, within COO64_RS27360at 164.812 kb on + strand, within COO64_RS27360at 164.812 kb on + strand, within COO64_RS27360at 164.813 kb on - strand, within COO64_RS27360at 164.813 kb on - strand, within COO64_RS27360at 164.813 kb on - strand, within COO64_RS27360at 164.813 kb on - strand, within COO64_RS27360at 164.848 kb on + strand, within COO64_RS27360at 164.848 kb on + strand, within COO64_RS27360at 164.848 kb on + strand, within COO64_RS27360at 164.848 kb on + strand, within COO64_RS27360at 164.848 kb on + strand, within COO64_RS27360at 164.849 kb on - strand, within COO64_RS27360at 164.849 kb on - strand, within COO64_RS27360at 164.849 kb on - strand, within COO64_RS27360at 164.850 kb on + strand, within COO64_RS27360at 164.912 kb on + strand, within COO64_RS27360at 164.912 kb on + strand, within COO64_RS27360at 164.912 kb on + strand, within COO64_RS27360at 164.913 kb on - strand, within COO64_RS27360at 164.913 kb on - strand, within COO64_RS27360at 164.913 kb on - strand, within COO64_RS27360at 164.913 kb on - strand, within COO64_RS27360at 164.913 kb on - strand, within COO64_RS27360at 164.913 kb on - strand, within COO64_RS27360at 164.913 kb on - strand, within COO64_RS27360at 164.913 kb on - strand, within COO64_RS27360at 164.915 kb on + strand, within COO64_RS27360at 164.915 kb on + strand, within COO64_RS27360at 164.915 kb on + strand, within COO64_RS27360at 164.915 kb on + strand, within COO64_RS27360at 164.915 kb on + strand, within COO64_RS27360at 164.915 kb on + strand, within COO64_RS27360at 164.915 kb on + strand, within COO64_RS27360at 164.915 kb on + strand, within COO64_RS27360at 164.915 kb on + strand, within COO64_RS27360at 164.916 kb on - strand, within COO64_RS27360at 164.916 kb on - strand, within COO64_RS27360at 164.916 kb on - strand, within COO64_RS27360at 164.916 kb on - strand, within COO64_RS27360at 164.916 kb on - strand, within COO64_RS27360at 164.916 kb on - strand, within COO64_RS27360at 164.916 kb on - strand, within COO64_RS27360at 164.916 kb on - strand, within COO64_RS27360at 164.916 kb on - strand, within COO64_RS27360at 164.916 kb on - strand, within COO64_RS27360at 164.916 kb on - strand, within COO64_RS27360at 164.916 kb on - strand, within COO64_RS27360at 164.919 kb on + strand, within COO64_RS27360at 164.919 kb on + strand, within COO64_RS27360at 164.919 kb on + strand, within COO64_RS27360at 164.919 kb on + strand, within COO64_RS27360at 164.919 kb on + strand, within COO64_RS27360at 164.919 kb on + strand, within COO64_RS27360at 164.920 kb on - strand, within COO64_RS27360at 164.920 kb on - strand, within COO64_RS27360at 164.920 kb on - strand, within COO64_RS27360at 164.920 kb on - strand, within COO64_RS27360at 164.920 kb on - strand, within COO64_RS27360at 164.920 kb on - strand, within COO64_RS27360at 164.920 kb on - strand, within COO64_RS27360at 164.920 kb on - strand, within COO64_RS27360at 164.928 kb on + strand, within COO64_RS27360at 164.928 kb on + strand, within COO64_RS27360at 164.928 kb on + strand, within COO64_RS27360at 164.928 kb on + strand, within COO64_RS27360at 164.928 kb on + strand, within COO64_RS27360at 164.929 kb on - strand, within COO64_RS27360at 164.929 kb on - strand, within COO64_RS27360at 164.929 kb on - strand, within COO64_RS27360at 164.929 kb on - strand, within COO64_RS27360at 164.929 kb on - strand, within COO64_RS27360at 164.955 kb on + strand, within COO64_RS27360at 165.156 kb on + strand, within COO64_RS27360at 165.156 kb on + strand, within COO64_RS27360at 165.156 kb on + strand, within COO64_RS27360at 165.157 kb on - strand, within COO64_RS27360at 165.188 kb on - strand, within COO64_RS27360at 165.188 kb on - strand, within COO64_RS27360at 165.274 kb on + strandat 165.274 kb on + strandat 165.274 kb on + strandat 165.274 kb on + strandat 165.274 kb on + strandat 165.275 kb on - strandat 165.275 kb on - strandat 165.275 kb on - strandat 165.275 kb on - strandat 165.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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163,343 + COO64_RS20340 0.50 +0.2
163,343 + COO64_RS20340 0.50 -0.0
163,344 - COO64_RS20340 0.50 -0.0
163,344 - COO64_RS20340 0.50 -1.1
163,486 + COO64_RS20340 0.70 -0.3
163,486 + COO64_RS20340 0.70 -0.5
163,486 + COO64_RS20340 0.70 -0.7
163,486 + COO64_RS20340 0.70 -0.4
163,487 - COO64_RS20340 0.70 +0.6
163,487 - COO64_RS20340 0.70 +0.1
163,516 - COO64_RS20340 0.74 -0.9
163,780 + COO64_RS20345 0.13 +0.5
163,780 + COO64_RS20345 0.13 -0.3
163,781 - COO64_RS20345 0.13 +0.2
163,781 - COO64_RS20345 0.13 +0.5
163,781 - COO64_RS20345 0.13 -1.0
163,781 - COO64_RS20345 0.13 -0.5
163,929 + COO64_RS20345 0.38 -0.4
163,930 - COO64_RS20345 0.38 +0.2
164,100 + COO64_RS20345 0.66 -0.0
164,100 + COO64_RS20345 0.66 -0.9
164,101 - COO64_RS20345 0.66 -0.7
164,376 - COO64_RS20350 0.33 +0.0
164,376 - COO64_RS20350 0.33 +0.5
164,420 + COO64_RS20350 0.53 -1.8
164,420 + COO64_RS20350 0.53 -1.0
164,484 - COO64_RS20350 0.81 -1.3
164,564 - -0.1
164,564 - +0.7
164,564 - -0.5
164,758 + COO64_RS27360 0.30 -0.1
164,759 - COO64_RS27360 0.30 +0.5
164,812 + COO64_RS27360 0.37 +0.2
164,812 + COO64_RS27360 0.37 +0.6
164,812 + COO64_RS27360 0.37 +1.1
164,813 - COO64_RS27360 0.37 -0.7
164,813 - COO64_RS27360 0.37 -0.1
164,813 - COO64_RS27360 0.37 -1.9
164,813 - COO64_RS27360 0.37 -0.2
164,848 + COO64_RS27360 0.41 +0.4
164,848 + COO64_RS27360 0.41 -0.3
164,848 + COO64_RS27360 0.41 +0.5
164,848 + COO64_RS27360 0.41 -0.5
164,848 + COO64_RS27360 0.41 +0.8
164,849 - COO64_RS27360 0.41 -1.0
164,849 - COO64_RS27360 0.41 -0.6
164,849 - COO64_RS27360 0.41 +0.9
164,850 + COO64_RS27360 0.41 -0.5
164,912 + COO64_RS27360 0.49 -1.5
164,912 + COO64_RS27360 0.49 -1.4
164,912 + COO64_RS27360 0.49 -1.0
164,913 - COO64_RS27360 0.49 -0.3
164,913 - COO64_RS27360 0.49 -0.3
164,913 - COO64_RS27360 0.49 -0.5
164,913 - COO64_RS27360 0.49 -1.8
164,913 - COO64_RS27360 0.49 -1.3
164,913 - COO64_RS27360 0.49 +0.7
164,913 - COO64_RS27360 0.49 -0.1
164,913 - COO64_RS27360 0.49 -0.2
164,915 + COO64_RS27360 0.50 -1.6
164,915 + COO64_RS27360 0.50 +0.9
164,915 + COO64_RS27360 0.50 -1.1
164,915 + COO64_RS27360 0.50 +0.8
164,915 + COO64_RS27360 0.50 +0.5
164,915 + COO64_RS27360 0.50 -0.7
164,915 + COO64_RS27360 0.50 -0.3
164,915 + COO64_RS27360 0.50 +1.4
164,915 + COO64_RS27360 0.50 -0.3
164,916 - COO64_RS27360 0.50 -0.2
164,916 - COO64_RS27360 0.50 +0.0
164,916 - COO64_RS27360 0.50 -1.3
164,916 - COO64_RS27360 0.50 -1.1
164,916 - COO64_RS27360 0.50 -0.5
164,916 - COO64_RS27360 0.50 +0.5
164,916 - COO64_RS27360 0.50 -0.8
164,916 - COO64_RS27360 0.50 +0.2
164,916 - COO64_RS27360 0.50 +0.1
164,916 - COO64_RS27360 0.50 +0.2
164,916 - COO64_RS27360 0.50 +1.0
164,916 - COO64_RS27360 0.50 +0.6
164,919 + COO64_RS27360 0.50 -0.7
164,919 + COO64_RS27360 0.50 +0.2
164,919 + COO64_RS27360 0.50 -0.1
164,919 + COO64_RS27360 0.50 -0.4
164,919 + COO64_RS27360 0.50 -1.5
164,919 + COO64_RS27360 0.50 +0.6
164,920 - COO64_RS27360 0.50 -0.2
164,920 - COO64_RS27360 0.50 -0.1
164,920 - COO64_RS27360 0.50 +0.3
164,920 - COO64_RS27360 0.50 +1.0
164,920 - COO64_RS27360 0.50 -0.4
164,920 - COO64_RS27360 0.50 -0.5
164,920 - COO64_RS27360 0.50 -0.1
164,920 - COO64_RS27360 0.50 -1.3
164,928 + COO64_RS27360 0.51 -0.1
164,928 + COO64_RS27360 0.51 -1.0
164,928 + COO64_RS27360 0.51 -0.1
164,928 + COO64_RS27360 0.51 +0.0
164,928 + COO64_RS27360 0.51 +1.0
164,929 - COO64_RS27360 0.52 -0.9
164,929 - COO64_RS27360 0.52 +0.2
164,929 - COO64_RS27360 0.52 +0.3
164,929 - COO64_RS27360 0.52 -0.4
164,929 - COO64_RS27360 0.52 +2.0
164,955 + COO64_RS27360 0.55 +0.5
165,156 + COO64_RS27360 0.80 +0.3
165,156 + COO64_RS27360 0.80 +0.8
165,156 + COO64_RS27360 0.80 +0.3
165,157 - COO64_RS27360 0.81 +0.3
165,188 - COO64_RS27360 0.84 -0.0
165,188 - COO64_RS27360 0.84 +0.7
165,274 + +0.1
165,274 + +0.9
165,274 + -0.8
165,274 + +1.0
165,274 + +0.3
165,275 - +0.2
165,275 - -0.5
165,275 - -0.8
165,275 - +0.5
165,275 - -0.3

Or see this region's nucleotide sequence