Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS19405

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS19400 and COO64_RS19405 overlap by 4 nucleotidesCOO64_RS19405 and COO64_RS19410 overlap by 1 nucleotides COO64_RS19400: COO64_RS19400 - monovalent cation/H+ antiporter subunit D, at 205,712 to 207,397 _RS19400 COO64_RS19405: COO64_RS19405 - Na+/H+ antiporter subunit C, at 207,394 to 207,738 _RS19405 COO64_RS19410: COO64_RS19410 - monovalent cation/H+ antiporter subunit A, at 207,738 to 210,653 _RS19410 Position (kb) 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 206.495 kb on + strand, within COO64_RS19400at 206.495 kb on + strand, within COO64_RS19400at 206.535 kb on + strand, within COO64_RS19400at 206.536 kb on - strand, within COO64_RS19400at 206.600 kb on + strand, within COO64_RS19400at 206.600 kb on + strand, within COO64_RS19400at 206.609 kb on + strand, within COO64_RS19400at 206.609 kb on + strand, within COO64_RS19400at 206.609 kb on + strand, within COO64_RS19400at 206.609 kb on + strand, within COO64_RS19400at 206.610 kb on - strand, within COO64_RS19400at 206.610 kb on - strand, within COO64_RS19400at 206.610 kb on - strand, within COO64_RS19400at 206.610 kb on - strand, within COO64_RS19400at 206.610 kb on - strand, within COO64_RS19400at 206.610 kb on - strand, within COO64_RS19400at 206.616 kb on + strand, within COO64_RS19400at 206.616 kb on + strand, within COO64_RS19400at 206.616 kb on + strand, within COO64_RS19400at 206.616 kb on + strand, within COO64_RS19400at 206.617 kb on - strand, within COO64_RS19400at 206.617 kb on - strand, within COO64_RS19400at 206.676 kb on + strand, within COO64_RS19400at 206.676 kb on + strand, within COO64_RS19400at 206.677 kb on - strand, within COO64_RS19400at 206.677 kb on - strand, within COO64_RS19400at 206.838 kb on + strand, within COO64_RS19400at 206.838 kb on + strand, within COO64_RS19400at 206.838 kb on + strand, within COO64_RS19400at 206.838 kb on + strand, within COO64_RS19400at 206.838 kb on + strand, within COO64_RS19400at 206.838 kb on + strand, within COO64_RS19400at 206.839 kb on - strand, within COO64_RS19400at 206.895 kb on + strand, within COO64_RS19400at 206.895 kb on + strand, within COO64_RS19400at 206.895 kb on + strand, within COO64_RS19400at 206.895 kb on + strand, within COO64_RS19400at 206.895 kb on + strand, within COO64_RS19400at 206.895 kb on + strand, within COO64_RS19400at 206.895 kb on + strand, within COO64_RS19400at 206.895 kb on + strand, within COO64_RS19400at 206.895 kb on + strand, within COO64_RS19400at 206.895 kb on + strand, within COO64_RS19400at 206.895 kb on + strand, within COO64_RS19400at 206.896 kb on - strand, within COO64_RS19400at 206.896 kb on - strand, within COO64_RS19400at 206.896 kb on - strand, within COO64_RS19400at 206.949 kb on + strand, within COO64_RS19400at 207.199 kb on - strand, within COO64_RS19400at 207.199 kb on - strand, within COO64_RS19400at 207.536 kb on + strand, within COO64_RS19405at 207.536 kb on + strand, within COO64_RS19405at 207.536 kb on + strand, within COO64_RS19405at 207.537 kb on - strand, within COO64_RS19405at 207.537 kb on - strand, within COO64_RS19405at 207.537 kb on - strand, within COO64_RS19405at 208.060 kb on + strand, within COO64_RS19410at 208.060 kb on + strand, within COO64_RS19410at 208.060 kb on + strand, within COO64_RS19410at 208.060 kb on + strand, within COO64_RS19410at 208.060 kb on + strand, within COO64_RS19410at 208.060 kb on + strand, within COO64_RS19410at 208.060 kb on + strand, within COO64_RS19410at 208.060 kb on + strand, within COO64_RS19410at 208.060 kb on + strand, within COO64_RS19410at 208.061 kb on - strand, within COO64_RS19410at 208.061 kb on - strand, within COO64_RS19410at 208.061 kb on - strand, within COO64_RS19410at 208.061 kb on - strand, within COO64_RS19410at 208.061 kb on - strand, within COO64_RS19410at 208.141 kb on + strand, within COO64_RS19410at 208.141 kb on + strand, within COO64_RS19410at 208.141 kb on + strand, within COO64_RS19410at 208.142 kb on - strand, within COO64_RS19410at 208.142 kb on - strand, within COO64_RS19410at 208.142 kb on - strand, within COO64_RS19410at 208.142 kb on - strand, within COO64_RS19410at 208.456 kb on + strand, within COO64_RS19410at 208.501 kb on + strand, within COO64_RS19410at 208.501 kb on + strand, within COO64_RS19410at 208.501 kb on + strand, within COO64_RS19410at 208.502 kb on - strand, within COO64_RS19410at 208.715 kb on + strand, within COO64_RS19410at 208.716 kb on - strand, within COO64_RS19410at 208.716 kb on - strand, within COO64_RS19410at 208.716 kb on - strand, within COO64_RS19410at 208.716 kb on - strand, within COO64_RS19410

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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206,495 + COO64_RS19400 0.46 -1.1
206,495 + COO64_RS19400 0.46 -1.2
206,535 + COO64_RS19400 0.49 -0.4
206,536 - COO64_RS19400 0.49 +1.4
206,600 + COO64_RS19400 0.53 +0.3
206,600 + COO64_RS19400 0.53 -0.2
206,609 + COO64_RS19400 0.53 +0.3
206,609 + COO64_RS19400 0.53 -0.3
206,609 + COO64_RS19400 0.53 -2.8
206,609 + COO64_RS19400 0.53 +0.6
206,610 - COO64_RS19400 0.53 +0.1
206,610 - COO64_RS19400 0.53 -0.3
206,610 - COO64_RS19400 0.53 -1.1
206,610 - COO64_RS19400 0.53 -0.2
206,610 - COO64_RS19400 0.53 -0.1
206,610 - COO64_RS19400 0.53 +0.4
206,616 + COO64_RS19400 0.54 +0.1
206,616 + COO64_RS19400 0.54 +0.6
206,616 + COO64_RS19400 0.54 -2.5
206,616 + COO64_RS19400 0.54 -0.9
206,617 - COO64_RS19400 0.54 +0.0
206,617 - COO64_RS19400 0.54 +2.3
206,676 + COO64_RS19400 0.57 +0.6
206,676 + COO64_RS19400 0.57 -0.8
206,677 - COO64_RS19400 0.57 +0.2
206,677 - COO64_RS19400 0.57 +0.7
206,838 + COO64_RS19400 0.67 +0.7
206,838 + COO64_RS19400 0.67 -0.5
206,838 + COO64_RS19400 0.67 -0.6
206,838 + COO64_RS19400 0.67 -0.3
206,838 + COO64_RS19400 0.67 -0.4
206,838 + COO64_RS19400 0.67 +0.9
206,839 - COO64_RS19400 0.67 +1.4
206,895 + COO64_RS19400 0.70 +0.6
206,895 + COO64_RS19400 0.70 -0.5
206,895 + COO64_RS19400 0.70 +0.1
206,895 + COO64_RS19400 0.70 +0.2
206,895 + COO64_RS19400 0.70 -2.2
206,895 + COO64_RS19400 0.70 -1.7
206,895 + COO64_RS19400 0.70 -1.0
206,895 + COO64_RS19400 0.70 +0.0
206,895 + COO64_RS19400 0.70 +0.6
206,895 + COO64_RS19400 0.70 -0.2
206,895 + COO64_RS19400 0.70 +0.5
206,896 - COO64_RS19400 0.70 +0.0
206,896 - COO64_RS19400 0.70 +0.3
206,896 - COO64_RS19400 0.70 -0.1
206,949 + COO64_RS19400 0.73 -0.7
207,199 - COO64_RS19400 0.88 +0.7
207,199 - COO64_RS19400 0.88 -0.6
207,536 + COO64_RS19405 0.41 -0.6
207,536 + COO64_RS19405 0.41 -1.5
207,536 + COO64_RS19405 0.41 -0.7
207,537 - COO64_RS19405 0.41 -0.6
207,537 - COO64_RS19405 0.41 -0.6
207,537 - COO64_RS19405 0.41 -0.7
208,060 + COO64_RS19410 0.11 -1.4
208,060 + COO64_RS19410 0.11 +0.4
208,060 + COO64_RS19410 0.11 -1.2
208,060 + COO64_RS19410 0.11 -0.7
208,060 + COO64_RS19410 0.11 +0.4
208,060 + COO64_RS19410 0.11 -1.9
208,060 + COO64_RS19410 0.11 +0.9
208,060 + COO64_RS19410 0.11 -0.1
208,060 + COO64_RS19410 0.11 -0.2
208,061 - COO64_RS19410 0.11 -0.0
208,061 - COO64_RS19410 0.11 +0.4
208,061 - COO64_RS19410 0.11 -0.8
208,061 - COO64_RS19410 0.11 -0.3
208,061 - COO64_RS19410 0.11 +0.9
208,141 + COO64_RS19410 0.14 -2.6
208,141 + COO64_RS19410 0.14 -0.6
208,141 + COO64_RS19410 0.14 +0.2
208,142 - COO64_RS19410 0.14 -0.2
208,142 - COO64_RS19410 0.14 -0.3
208,142 - COO64_RS19410 0.14 -0.3
208,142 - COO64_RS19410 0.14 -0.6
208,456 + COO64_RS19410 0.25 -0.9
208,501 + COO64_RS19410 0.26 -0.7
208,501 + COO64_RS19410 0.26 +0.1
208,501 + COO64_RS19410 0.26 -0.9
208,502 - COO64_RS19410 0.26 -1.9
208,715 + COO64_RS19410 0.34 -0.5
208,716 - COO64_RS19410 0.34 +0.6
208,716 - COO64_RS19410 0.34 +0.9
208,716 - COO64_RS19410 0.34 -0.4
208,716 - COO64_RS19410 0.34 +2.2

Or see this region's nucleotide sequence