Experiment: supernatant control, M9 with 0.25X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemN and COO64_RS18650 are separated by 83 nucleotides COO64_RS18650 and ccoS overlap by 8 nucleotides ccoS and COO64_RS18660 are separated by 12 nucleotides COO64_RS18660 and COO64_RS18665 are separated by 102 nucleotides COO64_RS18665 and ccoG are separated by 12 nucleotides
COO64_RS18645: hemN - oxygen-independent coproporphyrinogen III oxidase, at 36,214 to 37,596
hemN
COO64_RS18650: COO64_RS18650 - sulfite exporter TauE/SafE family protein, at 37,680 to 38,363
_RS18650
COO64_RS18655: ccoS - cbb3-type cytochrome oxidase assembly protein CcoS, at 38,356 to 38,568
ccoS
COO64_RS18660: COO64_RS18660 - heavy metal translocating P-type ATPase, at 38,581 to 41,034
_RS18660
COO64_RS18665: COO64_RS18665 - FixH family protein, at 41,137 to 41,676
_RS18665
COO64_RS18670: ccoG - cytochrome c oxidase accessory protein CcoG, at 41,689 to 43,104
ccoG
Position (kb) 38
39
40
41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 37.667 kb on + strand at 37.667 kb on + strand at 37.667 kb on + strand at 37.912 kb on + strand, within COO64_RS18650 at 37.912 kb on + strand, within COO64_RS18650 at 37.913 kb on - strand, within COO64_RS18650 at 37.913 kb on - strand, within COO64_RS18650 at 37.914 kb on + strand, within COO64_RS18650 at 37.914 kb on + strand, within COO64_RS18650 at 37.914 kb on + strand, within COO64_RS18650 at 37.914 kb on + strand, within COO64_RS18650 at 38.010 kb on - strand, within COO64_RS18650 at 38.074 kb on + strand, within COO64_RS18650 at 38.074 kb on + strand, within COO64_RS18650 at 38.074 kb on + strand, within COO64_RS18650 at 38.075 kb on - strand, within COO64_RS18650 at 38.209 kb on + strand, within COO64_RS18650 at 38.210 kb on - strand, within COO64_RS18650 at 38.349 kb on + strand at 38.349 kb on + strand at 38.350 kb on - strand at 38.374 kb on - strand at 38.478 kb on - strand, within ccoS at 38.478 kb on - strand, within ccoS at 38.478 kb on - strand, within ccoS at 38.478 kb on - strand, within ccoS at 38.510 kb on + strand, within ccoS at 38.510 kb on + strand, within ccoS at 38.510 kb on + strand, within ccoS at 38.510 kb on + strand, within ccoS at 38.510 kb on + strand, within ccoS at 38.510 kb on + strand, within ccoS at 38.510 kb on + strand, within ccoS at 38.510 kb on + strand, within ccoS at 38.511 kb on - strand, within ccoS at 38.511 kb on - strand, within ccoS at 38.511 kb on - strand, within ccoS at 38.511 kb on - strand, within ccoS at 38.511 kb on - strand, within ccoS at 38.511 kb on - strand, within ccoS at 38.511 kb on - strand, within ccoS at 38.511 kb on - strand, within ccoS at 38.555 kb on + strand at 38.556 kb on - strand at 38.556 kb on - strand at 38.556 kb on - strand at 38.754 kb on + strand at 38.754 kb on + strand at 38.755 kb on - strand at 38.755 kb on - strand at 38.756 kb on + strand at 38.756 kb on + strand at 38.756 kb on + strand at 38.757 kb on - strand at 38.757 kb on - strand at 38.904 kb on + strand, within COO64_RS18660 at 39.514 kb on + strand, within COO64_RS18660 at 39.933 kb on - strand, within COO64_RS18660 at 39.982 kb on - strand, within COO64_RS18660 at 40.211 kb on + strand, within COO64_RS18660 at 40.211 kb on + strand, within COO64_RS18660 at 40.212 kb on - strand, within COO64_RS18660 at 40.352 kb on + strand, within COO64_RS18660 at 40.353 kb on - strand, within COO64_RS18660 at 40.353 kb on - strand, within COO64_RS18660 at 40.353 kb on - strand, within COO64_RS18660 at 40.353 kb on - strand, within COO64_RS18660 at 40.353 kb on - strand, within COO64_RS18660 at 40.353 kb on - strand, within COO64_RS18660 at 40.553 kb on + strand, within COO64_RS18660 at 40.554 kb on - strand, within COO64_RS18660 at 40.770 kb on + strand, within COO64_RS18660 at 40.770 kb on + strand, within COO64_RS18660 at 40.771 kb on - strand, within COO64_RS18660 at 40.808 kb on + strand at 40.881 kb on - strand at 40.881 kb on - strand at 40.884 kb on - strand at 40.884 kb on - strand at 40.884 kb on - strand at 41.013 kb on - strand at 41.013 kb on - strand at 41.037 kb on + strand at 41.038 kb on - strand at 41.094 kb on + strand at 41.528 kb on + strand, within COO64_RS18665 at 41.528 kb on + strand, within COO64_RS18665 at 41.531 kb on + strand, within COO64_RS18665 at 41.531 kb on + strand, within COO64_RS18665 at 41.531 kb on + strand, within COO64_RS18665 at 41.532 kb on - strand, within COO64_RS18665 at 41.532 kb on - strand, within COO64_RS18665 at 41.532 kb on - strand, within COO64_RS18665 at 41.532 kb on - strand, within COO64_RS18665 at 41.532 kb on - strand, within COO64_RS18665 at 41.532 kb on - strand, within COO64_RS18665 at 41.532 kb on - strand, within COO64_RS18665 at 41.532 kb on - strand, within COO64_RS18665 at 41.536 kb on - strand, within COO64_RS18665 at 41.536 kb on - strand, within COO64_RS18665 at 41.611 kb on + strand, within COO64_RS18665 at 41.645 kb on + strand at 41.646 kb on - strand at 41.646 kb on - strand at 41.818 kb on + strand at 41.819 kb on - strand at 41.854 kb on + strand, within ccoG at 41.854 kb on + strand, within ccoG at 41.854 kb on + strand, within ccoG at 41.855 kb on - strand, within ccoG at 41.855 kb on - strand, within ccoG at 41.910 kb on - strand, within ccoG at 41.910 kb on - strand, within ccoG at 41.910 kb on - strand, within ccoG at 41.951 kb on + strand, within ccoG at 41.952 kb on - strand, within ccoG
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB remove 37,667 + -0.1 37,667 + -0.5 37,667 + -1.1 37,912 + COO64_RS18650 0.34 +0.9 37,912 + COO64_RS18650 0.34 -0.4 37,913 - COO64_RS18650 0.34 -0.1 37,913 - COO64_RS18650 0.34 -0.1 37,914 + COO64_RS18650 0.34 +0.5 37,914 + COO64_RS18650 0.34 -0.6 37,914 + COO64_RS18650 0.34 -0.9 37,914 + COO64_RS18650 0.34 -0.4 38,010 - COO64_RS18650 0.48 +1.1 38,074 + COO64_RS18650 0.58 -1.2 38,074 + COO64_RS18650 0.58 -0.9 38,074 + COO64_RS18650 0.58 -0.1 38,075 - COO64_RS18650 0.58 +0.8 38,209 + COO64_RS18650 0.77 +0.5 38,210 - COO64_RS18650 0.77 -0.1 38,349 + -1.5 38,349 + +0.4 38,350 - +1.4 38,374 - -0.4 38,478 - ccoS COO64_RS18655 0.57 -1.8 38,478 - ccoS COO64_RS18655 0.57 -0.6 38,478 - ccoS COO64_RS18655 0.57 +0.7 38,478 - ccoS COO64_RS18655 0.57 +1.2 38,510 + ccoS COO64_RS18655 0.72 +0.9 38,510 + ccoS COO64_RS18655 0.72 +0.2 38,510 + ccoS COO64_RS18655 0.72 -1.4 38,510 + ccoS COO64_RS18655 0.72 +0.2 38,510 + ccoS COO64_RS18655 0.72 +0.9 38,510 + ccoS COO64_RS18655 0.72 +0.4 38,510 + ccoS COO64_RS18655 0.72 +1.2 38,510 + ccoS COO64_RS18655 0.72 -2.3 38,511 - ccoS COO64_RS18655 0.73 +1.4 38,511 - ccoS COO64_RS18655 0.73 +0.6 38,511 - ccoS COO64_RS18655 0.73 -0.4 38,511 - ccoS COO64_RS18655 0.73 -0.2 38,511 - ccoS COO64_RS18655 0.73 -0.6 38,511 - ccoS COO64_RS18655 0.73 -0.9 38,511 - ccoS COO64_RS18655 0.73 -1.2 38,511 - ccoS COO64_RS18655 0.73 +0.4 38,555 + +1.9 38,556 - +0.9 38,556 - -1.4 38,556 - -1.5 38,754 + +0.2 38,754 + -0.4 38,755 - -0.5 38,755 - +1.9 38,756 + +0.9 38,756 + +0.5 38,756 + +1.9 38,757 - -0.6 38,757 - -0.4 38,904 + COO64_RS18660 0.13 -0.9 39,514 + COO64_RS18660 0.38 +0.1 39,933 - COO64_RS18660 0.55 +0.4 39,982 - COO64_RS18660 0.57 -0.1 40,211 + COO64_RS18660 0.66 -1.0 40,211 + COO64_RS18660 0.66 -0.2 40,212 - COO64_RS18660 0.66 -1.8 40,352 + COO64_RS18660 0.72 -0.8 40,353 - COO64_RS18660 0.72 +1.6 40,353 - COO64_RS18660 0.72 -0.4 40,353 - COO64_RS18660 0.72 +0.6 40,353 - COO64_RS18660 0.72 +0.4 40,353 - COO64_RS18660 0.72 -0.4 40,353 - COO64_RS18660 0.72 -0.6 40,553 + COO64_RS18660 0.80 +0.7 40,554 - COO64_RS18660 0.80 -0.6 40,770 + COO64_RS18660 0.89 -0.1 40,770 + COO64_RS18660 0.89 -0.6 40,771 - COO64_RS18660 0.89 +0.6 40,808 + +0.9 40,881 - -1.8 40,881 - -0.2 40,884 - +0.4 40,884 - +1.4 40,884 - -0.4 41,013 - +1.1 41,013 - -1.1 41,037 + +0.2 41,038 - +0.5 41,094 + -0.3 41,528 + COO64_RS18665 0.72 -0.8 41,528 + COO64_RS18665 0.72 -0.6 41,531 + COO64_RS18665 0.73 +2.5 41,531 + COO64_RS18665 0.73 +0.2 41,531 + COO64_RS18665 0.73 +1.1 41,532 - COO64_RS18665 0.73 +0.9 41,532 - COO64_RS18665 0.73 -1.1 41,532 - COO64_RS18665 0.73 -0.4 41,532 - COO64_RS18665 0.73 -0.2 41,532 - COO64_RS18665 0.73 +1.6 41,532 - COO64_RS18665 0.73 +0.2 41,532 - COO64_RS18665 0.73 +0.8 41,532 - COO64_RS18665 0.73 -0.6 41,536 - COO64_RS18665 0.74 -0.7 41,536 - COO64_RS18665 0.74 +1.2 41,611 + COO64_RS18665 0.88 -1.5 41,645 + +0.1 41,646 - -0.6 41,646 - +0.5 41,818 + -0.4 41,819 - +0.6 41,854 + ccoG COO64_RS18670 0.12 -1.1 41,854 + ccoG COO64_RS18670 0.12 +0.8 41,854 + ccoG COO64_RS18670 0.12 +1.5 41,855 - ccoG COO64_RS18670 0.12 -1.0 41,855 - ccoG COO64_RS18670 0.12 -0.2 41,910 - ccoG COO64_RS18670 0.16 -0.9 41,910 - ccoG COO64_RS18670 0.16 +1.6 41,910 - ccoG COO64_RS18670 0.16 -0.8 41,951 + ccoG COO64_RS18670 0.19 +0.2 41,952 - ccoG COO64_RS18670 0.19 +1.9
Or see this region's nucleotide sequence