Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS17665

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS17660 and COO64_RS17665 are separated by 158 nucleotidesCOO64_RS17665 and COO64_RS17670 overlap by 17 nucleotides COO64_RS17660: COO64_RS17660 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 48,220 to 49,056 _RS17660 COO64_RS17665: COO64_RS17665 - carbamoyltransferase, at 49,215 to 50,972 _RS17665 COO64_RS17670: COO64_RS17670 - glycosyltransferase, at 50,956 to 52,086 _RS17670 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1at 48.226 kb on + strandat 48.226 kb on + strandat 48.226 kb on + strandat 48.227 kb on - strandat 48.388 kb on - strand, within COO64_RS17660at 48.458 kb on - strand, within COO64_RS17660at 48.503 kb on - strand, within COO64_RS17660at 48.838 kb on + strand, within COO64_RS17660at 48.838 kb on + strand, within COO64_RS17660at 48.839 kb on - strand, within COO64_RS17660at 48.856 kb on - strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.889 kb on + strand, within COO64_RS17660at 48.890 kb on - strand, within COO64_RS17660at 48.890 kb on - strand, within COO64_RS17660at 48.890 kb on - strand, within COO64_RS17660at 48.890 kb on - strand, within COO64_RS17660at 49.023 kb on + strandat 49.024 kb on - strandat 49.055 kb on - strandat 49.063 kb on + strandat 49.063 kb on + strandat 49.064 kb on - strandat 49.064 kb on - strandat 49.102 kb on + strandat 49.102 kb on + strandat 49.102 kb on + strandat 49.102 kb on + strandat 49.102 kb on + strandat 49.102 kb on + strandat 49.103 kb on - strandat 49.103 kb on - strandat 49.103 kb on - strandat 49.103 kb on - strandat 49.103 kb on - strandat 49.103 kb on - strandat 49.130 kb on - strandat 49.142 kb on - strandat 49.143 kb on + strandat 49.143 kb on + strandat 49.143 kb on + strandat 49.143 kb on + strandat 49.188 kb on + strandat 49.188 kb on + strandat 49.188 kb on + strandat 49.193 kb on - strandat 49.193 kb on - strandat 49.208 kb on + strandat 49.208 kb on + strandat 49.275 kb on + strandat 49.275 kb on + strandat 49.275 kb on + strandat 49.276 kb on - strandat 49.788 kb on + strand, within COO64_RS17665at 49.788 kb on + strand, within COO64_RS17665at 49.788 kb on + strand, within COO64_RS17665at 49.986 kb on + strand, within COO64_RS17665at 50.052 kb on + strand, within COO64_RS17665at 50.052 kb on + strand, within COO64_RS17665at 50.052 kb on + strand, within COO64_RS17665at 50.280 kb on + strand, within COO64_RS17665at 50.280 kb on + strand, within COO64_RS17665at 50.280 kb on + strand, within COO64_RS17665at 50.328 kb on + strand, within COO64_RS17665at 50.328 kb on + strand, within COO64_RS17665at 50.772 kb on + strand, within COO64_RS17665at 50.772 kb on + strand, within COO64_RS17665at 50.955 kb on + strandat 50.955 kb on + strandat 50.955 kb on + strandat 50.955 kb on + strandat 50.955 kb on + strandat 50.955 kb on + strandat 50.955 kb on + strandat 50.955 kb on + strandat 50.955 kb on + strandat 50.955 kb on + strandat 50.955 kb on + strandat 50.956 kb on - strandat 50.956 kb on - strandat 50.956 kb on - strandat 50.956 kb on - strandat 50.981 kb on + strandat 50.981 kb on + strandat 51.001 kb on + strandat 51.259 kb on + strand, within COO64_RS17670at 51.259 kb on + strand, within COO64_RS17670at 51.259 kb on + strand, within COO64_RS17670at 51.259 kb on + strand, within COO64_RS17670at 51.259 kb on + strand, within COO64_RS17670at 51.259 kb on + strand, within COO64_RS17670at 51.260 kb on - strand, within COO64_RS17670at 51.260 kb on - strand, within COO64_RS17670at 51.260 kb on - strand, within COO64_RS17670at 51.319 kb on + strand, within COO64_RS17670at 51.495 kb on - strand, within COO64_RS17670at 51.647 kb on + strand, within COO64_RS17670

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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48,226 + +0.5
48,226 + +0.1
48,226 + +0.6
48,227 - +0.2
48,388 - COO64_RS17660 0.20 +1.3
48,458 - COO64_RS17660 0.28 -0.6
48,503 - COO64_RS17660 0.34 +0.6
48,838 + COO64_RS17660 0.74 -0.7
48,838 + COO64_RS17660 0.74 -0.4
48,839 - COO64_RS17660 0.74 -0.0
48,856 - COO64_RS17660 0.76 -0.4
48,889 + COO64_RS17660 0.80 -0.2
48,889 + COO64_RS17660 0.80 +0.2
48,889 + COO64_RS17660 0.80 +0.3
48,889 + COO64_RS17660 0.80 +0.1
48,889 + COO64_RS17660 0.80 +0.4
48,889 + COO64_RS17660 0.80 -0.2
48,889 + COO64_RS17660 0.80 +0.0
48,889 + COO64_RS17660 0.80 +0.6
48,889 + COO64_RS17660 0.80 -0.2
48,889 + COO64_RS17660 0.80 -0.1
48,889 + COO64_RS17660 0.80 -0.9
48,889 + COO64_RS17660 0.80 +0.3
48,889 + COO64_RS17660 0.80 -2.2
48,889 + COO64_RS17660 0.80 +0.5
48,889 + COO64_RS17660 0.80 -1.7
48,890 - COO64_RS17660 0.80 +0.0
48,890 - COO64_RS17660 0.80 -0.8
48,890 - COO64_RS17660 0.80 -0.3
48,890 - COO64_RS17660 0.80 +0.9
49,023 + -0.8
49,024 - -0.5
49,055 - +0.3
49,063 + +0.6
49,063 + -0.1
49,064 - -0.6
49,064 - +0.0
49,102 + +0.0
49,102 + +0.2
49,102 + +0.6
49,102 + +0.2
49,102 + +0.5
49,102 + -2.4
49,103 - +0.0
49,103 - -1.3
49,103 - +0.2
49,103 - -0.1
49,103 - +0.6
49,103 - -2.7
49,130 - +0.4
49,142 - +0.9
49,143 + +1.0
49,143 + +1.2
49,143 + +0.6
49,143 + +0.8
49,188 + -0.8
49,188 + -0.2
49,188 + -1.4
49,193 - +0.0
49,193 - -0.3
49,208 + -0.4
49,208 + +1.3
49,275 + +0.0
49,275 + +0.6
49,275 + +0.5
49,276 - -0.5
49,788 + COO64_RS17665 0.33 -0.3
49,788 + COO64_RS17665 0.33 +1.2
49,788 + COO64_RS17665 0.33 -0.5
49,986 + COO64_RS17665 0.44 -0.5
50,052 + COO64_RS17665 0.48 +0.5
50,052 + COO64_RS17665 0.48 -0.3
50,052 + COO64_RS17665 0.48 +0.5
50,280 + COO64_RS17665 0.61 -0.9
50,280 + COO64_RS17665 0.61 -0.5
50,280 + COO64_RS17665 0.61 -0.3
50,328 + COO64_RS17665 0.63 -0.5
50,328 + COO64_RS17665 0.63 -0.4
50,772 + COO64_RS17665 0.89 -1.0
50,772 + COO64_RS17665 0.89 +0.5
50,955 + +0.2
50,955 + -0.5
50,955 + +0.8
50,955 + -0.1
50,955 + -0.5
50,955 + -0.8
50,955 + +0.2
50,955 + -0.9
50,955 + +0.6
50,955 + +1.4
50,955 + +0.2
50,956 - -1.3
50,956 - +0.0
50,956 - -0.5
50,956 - -1.5
50,981 + -1.1
50,981 + -0.5
51,001 + +0.7
51,259 + COO64_RS17670 0.27 -1.9
51,259 + COO64_RS17670 0.27 +0.5
51,259 + COO64_RS17670 0.27 -0.5
51,259 + COO64_RS17670 0.27 -1.5
51,259 + COO64_RS17670 0.27 -1.2
51,259 + COO64_RS17670 0.27 -1.4
51,260 - COO64_RS17670 0.27 +0.0
51,260 - COO64_RS17670 0.27 -1.0
51,260 - COO64_RS17670 0.27 -1.0
51,319 + COO64_RS17670 0.32 -0.5
51,495 - COO64_RS17670 0.48 -0.5
51,647 + COO64_RS17670 0.61 -0.8

Or see this region's nucleotide sequence