Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS16615

Experiment: supernatant control, M9 with 0.25X LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntcmoB and cmoA overlap by 4 nucleotidescmoA and COO64_RS16620 are separated by 85 nucleotidesCOO64_RS16620 and COO64_RS16625 are separated by 121 nucleotides COO64_RS16610: cmoB - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 63,627 to 64,583 cmoB COO64_RS16615: cmoA - carboxy-S-adenosyl-L-methionine synthase CmoA, at 64,580 to 65,323 cmoA COO64_RS16620: COO64_RS16620 - protease inhibitor I42 family protein, at 65,409 to 65,807 _RS16620 COO64_RS16625: COO64_RS16625 - alpha-xenorhabdolysin family binary toxin subunit A, at 65,929 to 67,092 _RS16625 Position (kb) 64 65 66Strain fitness (log2 ratio) -1 0 1 2 3at 63.724 kb on + strand, within cmoBat 63.997 kb on + strand, within cmoBat 63.998 kb on - strand, within cmoBat 64.097 kb on - strand, within cmoBat 64.189 kb on + strand, within cmoBat 64.189 kb on + strand, within cmoBat 64.190 kb on - strand, within cmoBat 64.190 kb on - strand, within cmoBat 64.190 kb on - strand, within cmoBat 64.190 kb on - strand, within cmoBat 64.190 kb on - strand, within cmoBat 64.425 kb on - strand, within cmoBat 64.610 kb on + strandat 64.610 kb on + strandat 65.019 kb on + strand, within cmoAat 65.019 kb on + strand, within cmoAat 65.019 kb on + strand, within cmoAat 65.020 kb on - strand, within cmoAat 65.020 kb on - strand, within cmoAat 65.020 kb on - strand, within cmoAat 65.020 kb on - strand, within cmoAat 65.139 kb on + strand, within cmoAat 65.140 kb on - strand, within cmoAat 65.140 kb on - strand, within cmoAat 65.140 kb on - strand, within cmoAat 65.301 kb on - strandat 65.365 kb on - strandat 65.410 kb on + strandat 65.410 kb on + strandat 65.476 kb on + strand, within COO64_RS16620at 65.476 kb on + strand, within COO64_RS16620at 65.575 kb on + strand, within COO64_RS16620at 65.575 kb on + strand, within COO64_RS16620at 65.576 kb on - strand, within COO64_RS16620at 65.622 kb on + strand, within COO64_RS16620at 65.623 kb on - strand, within COO64_RS16620at 65.623 kb on - strand, within COO64_RS16620at 65.694 kb on + strand, within COO64_RS16620at 65.694 kb on + strand, within COO64_RS16620at 65.694 kb on + strand, within COO64_RS16620at 65.694 kb on + strand, within COO64_RS16620at 65.695 kb on - strand, within COO64_RS16620at 65.695 kb on - strand, within COO64_RS16620at 65.695 kb on - strand, within COO64_RS16620at 65.695 kb on - strand, within COO64_RS16620at 65.695 kb on - strand, within COO64_RS16620at 65.695 kb on - strand, within COO64_RS16620at 65.695 kb on - strand, within COO64_RS16620at 65.695 kb on - strand, within COO64_RS16620at 65.695 kb on - strand, within COO64_RS16620at 65.832 kb on + strandat 65.882 kb on + strandat 65.882 kb on + strandat 65.882 kb on + strandat 65.882 kb on + strandat 65.882 kb on + strandat 65.883 kb on - strandat 65.883 kb on - strandat 65.883 kb on - strandat 65.914 kb on - strandat 65.914 kb on - strandat 65.914 kb on - strandat 65.937 kb on + strandat 65.937 kb on + strandat 65.937 kb on + strandat 65.938 kb on - strandat 65.938 kb on - strandat 66.057 kb on + strand, within COO64_RS16625at 66.057 kb on + strand, within COO64_RS16625at 66.057 kb on + strand, within COO64_RS16625at 66.057 kb on + strand, within COO64_RS16625at 66.057 kb on + strand, within COO64_RS16625at 66.057 kb on + strand, within COO64_RS16625at 66.057 kb on + strand, within COO64_RS16625at 66.058 kb on - strand, within COO64_RS16625at 66.058 kb on - strand, within COO64_RS16625at 66.058 kb on - strand, within COO64_RS16625at 66.058 kb on - strand, within COO64_RS16625at 66.058 kb on - strand, within COO64_RS16625at 66.058 kb on - strand, within COO64_RS16625at 66.058 kb on - strand, within COO64_RS16625at 66.058 kb on - strand, within COO64_RS16625at 66.058 kb on - strand, within COO64_RS16625at 66.077 kb on - strand, within COO64_RS16625at 66.085 kb on + strand, within COO64_RS16625at 66.085 kb on + strand, within COO64_RS16625at 66.085 kb on + strand, within COO64_RS16625at 66.085 kb on + strand, within COO64_RS16625at 66.085 kb on + strand, within COO64_RS16625at 66.086 kb on - strand, within COO64_RS16625at 66.086 kb on - strand, within COO64_RS16625at 66.086 kb on - strand, within COO64_RS16625at 66.086 kb on - strand, within COO64_RS16625at 66.086 kb on - strand, within COO64_RS16625at 66.086 kb on - strand, within COO64_RS16625at 66.086 kb on - strand, within COO64_RS16625at 66.088 kb on - strand, within COO64_RS16625at 66.088 kb on - strand, within COO64_RS16625at 66.088 kb on - strand, within COO64_RS16625at 66.088 kb on - strand, within COO64_RS16625at 66.088 kb on - strand, within COO64_RS16625at 66.088 kb on - strand, within COO64_RS16625at 66.105 kb on + strand, within COO64_RS16625at 66.197 kb on + strand, within COO64_RS16625at 66.198 kb on - strand, within COO64_RS16625at 66.224 kb on + strand, within COO64_RS16625at 66.225 kb on - strand, within COO64_RS16625at 66.225 kb on - strand, within COO64_RS16625at 66.225 kb on - strand, within COO64_RS16625at 66.225 kb on - strand, within COO64_RS16625at 66.225 kb on - strand, within COO64_RS16625at 66.225 kb on - strand, within COO64_RS16625at 66.225 kb on - strand, within COO64_RS16625at 66.237 kb on + strand, within COO64_RS16625at 66.237 kb on + strand, within COO64_RS16625at 66.238 kb on - strand, within COO64_RS16625at 66.238 kb on - strand, within COO64_RS16625at 66.238 kb on - strand, within COO64_RS16625at 66.238 kb on - strand, within COO64_RS16625at 66.286 kb on - strand, within COO64_RS16625at 66.302 kb on + strand, within COO64_RS16625at 66.303 kb on - strand, within COO64_RS16625at 66.303 kb on - strand, within COO64_RS16625at 66.303 kb on - strand, within COO64_RS16625at 66.303 kb on - strand, within COO64_RS16625at 66.303 kb on - strand, within COO64_RS16625at 66.303 kb on - strand, within COO64_RS16625

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
remove
63,724 + cmoB COO64_RS16610 0.10 -0.4
63,997 + cmoB COO64_RS16610 0.39 -0.1
63,998 - cmoB COO64_RS16610 0.39 -1.2
64,097 - cmoB COO64_RS16610 0.49 +0.9
64,189 + cmoB COO64_RS16610 0.59 -0.4
64,189 + cmoB COO64_RS16610 0.59 +0.6
64,190 - cmoB COO64_RS16610 0.59 +0.1
64,190 - cmoB COO64_RS16610 0.59 -1.2
64,190 - cmoB COO64_RS16610 0.59 +0.2
64,190 - cmoB COO64_RS16610 0.59 +2.4
64,190 - cmoB COO64_RS16610 0.59 -0.3
64,425 - cmoB COO64_RS16610 0.83 +0.8
64,610 + +0.4
64,610 + -0.5
65,019 + cmoA COO64_RS16615 0.59 +0.4
65,019 + cmoA COO64_RS16615 0.59 -0.8
65,019 + cmoA COO64_RS16615 0.59 +0.1
65,020 - cmoA COO64_RS16615 0.59 -1.1
65,020 - cmoA COO64_RS16615 0.59 +0.2
65,020 - cmoA COO64_RS16615 0.59 -0.5
65,020 - cmoA COO64_RS16615 0.59 -0.5
65,139 + cmoA COO64_RS16615 0.75 -0.7
65,140 - cmoA COO64_RS16615 0.75 -0.7
65,140 - cmoA COO64_RS16615 0.75 -0.7
65,140 - cmoA COO64_RS16615 0.75 -0.8
65,301 - -0.8
65,365 - -0.1
65,410 + -0.4
65,410 + -0.3
65,476 + COO64_RS16620 0.17 -0.5
65,476 + COO64_RS16620 0.17 -0.8
65,575 + COO64_RS16620 0.42 -0.8
65,575 + COO64_RS16620 0.42 +0.5
65,576 - COO64_RS16620 0.42 -0.6
65,622 + COO64_RS16620 0.53 +1.0
65,623 - COO64_RS16620 0.54 -0.9
65,623 - COO64_RS16620 0.54 -0.6
65,694 + COO64_RS16620 0.71 -0.1
65,694 + COO64_RS16620 0.71 -0.9
65,694 + COO64_RS16620 0.71 -1.0
65,694 + COO64_RS16620 0.71 -0.5
65,695 - COO64_RS16620 0.72 -0.7
65,695 - COO64_RS16620 0.72 -0.4
65,695 - COO64_RS16620 0.72 +0.0
65,695 - COO64_RS16620 0.72 -0.3
65,695 - COO64_RS16620 0.72 -0.3
65,695 - COO64_RS16620 0.72 +3.3
65,695 - COO64_RS16620 0.72 +0.0
65,695 - COO64_RS16620 0.72 -0.4
65,695 - COO64_RS16620 0.72 +0.1
65,832 + -0.3
65,882 + +0.4
65,882 + +0.5
65,882 + +0.3
65,882 + -0.1
65,882 + +0.0
65,883 - -0.3
65,883 - +0.0
65,883 - -0.4
65,914 - +0.1
65,914 - +0.2
65,914 - +1.0
65,937 + -0.8
65,937 + -1.7
65,937 + -0.6
65,938 - -0.0
65,938 - +0.5
66,057 + COO64_RS16625 0.11 +0.4
66,057 + COO64_RS16625 0.11 -0.4
66,057 + COO64_RS16625 0.11 +0.6
66,057 + COO64_RS16625 0.11 +0.1
66,057 + COO64_RS16625 0.11 +0.4
66,057 + COO64_RS16625 0.11 -0.1
66,057 + COO64_RS16625 0.11 -0.2
66,058 - COO64_RS16625 0.11 -0.1
66,058 - COO64_RS16625 0.11 -0.7
66,058 - COO64_RS16625 0.11 +0.2
66,058 - COO64_RS16625 0.11 -0.6
66,058 - COO64_RS16625 0.11 -1.1
66,058 - COO64_RS16625 0.11 -0.3
66,058 - COO64_RS16625 0.11 -0.5
66,058 - COO64_RS16625 0.11 -1.3
66,058 - COO64_RS16625 0.11 -0.6
66,077 - COO64_RS16625 0.13 -0.0
66,085 + COO64_RS16625 0.13 -0.3
66,085 + COO64_RS16625 0.13 -0.5
66,085 + COO64_RS16625 0.13 -1.5
66,085 + COO64_RS16625 0.13 -1.1
66,085 + COO64_RS16625 0.13 -1.1
66,086 - COO64_RS16625 0.13 -1.1
66,086 - COO64_RS16625 0.13 +1.3
66,086 - COO64_RS16625 0.13 +0.2
66,086 - COO64_RS16625 0.13 -0.7
66,086 - COO64_RS16625 0.13 -0.1
66,086 - COO64_RS16625 0.13 -0.8
66,086 - COO64_RS16625 0.13 +0.7
66,088 - COO64_RS16625 0.14 -0.9
66,088 - COO64_RS16625 0.14 -0.8
66,088 - COO64_RS16625 0.14 +0.1
66,088 - COO64_RS16625 0.14 +0.4
66,088 - COO64_RS16625 0.14 -0.9
66,088 - COO64_RS16625 0.14 +0.2
66,105 + COO64_RS16625 0.15 +0.4
66,197 + COO64_RS16625 0.23 +0.0
66,198 - COO64_RS16625 0.23 -1.0
66,224 + COO64_RS16625 0.25 -0.0
66,225 - COO64_RS16625 0.25 -1.0
66,225 - COO64_RS16625 0.25 -1.0
66,225 - COO64_RS16625 0.25 +0.1
66,225 - COO64_RS16625 0.25 -1.4
66,225 - COO64_RS16625 0.25 -0.1
66,225 - COO64_RS16625 0.25 -1.0
66,225 - COO64_RS16625 0.25 +0.0
66,237 + COO64_RS16625 0.26 +0.9
66,237 + COO64_RS16625 0.26 -0.1
66,238 - COO64_RS16625 0.27 -0.1
66,238 - COO64_RS16625 0.27 +0.5
66,238 - COO64_RS16625 0.27 -0.7
66,238 - COO64_RS16625 0.27 +0.4
66,286 - COO64_RS16625 0.31 -0.7
66,302 + COO64_RS16625 0.32 +1.3
66,303 - COO64_RS16625 0.32 +0.6
66,303 - COO64_RS16625 0.32 -0.4
66,303 - COO64_RS16625 0.32 +1.8
66,303 - COO64_RS16625 0.32 -0.4
66,303 - COO64_RS16625 0.32 -0.0
66,303 - COO64_RS16625 0.32 -0.6

Or see this region's nucleotide sequence