Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS15525

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS15515 and ybeY overlap by 8 nucleotidesybeY and COO64_RS15525 are separated by 28 nucleotidesCOO64_RS15525 and lnt are separated by 8 nucleotides COO64_RS15515: COO64_RS15515 - PhoH family protein, at 119,996 to 120,997 _RS15515 COO64_RS15520: ybeY - rRNA maturation RNase YbeY, at 120,990 to 121,463 ybeY COO64_RS15525: COO64_RS15525 - HlyC/CorC family transporter, at 121,492 to 122,331 _RS15525 COO64_RS15530: lnt - apolipoprotein N-acyltransferase, at 122,340 to 123,857 lnt Position (kb) 121 122 123Strain fitness (log2 ratio) -2 -1 0 1 2at 120.492 kb on + strand, within COO64_RS15515at 120.492 kb on + strand, within COO64_RS15515at 120.590 kb on + strand, within COO64_RS15515at 120.590 kb on + strand, within COO64_RS15515at 120.662 kb on + strand, within COO64_RS15515at 120.662 kb on + strand, within COO64_RS15515at 120.662 kb on + strand, within COO64_RS15515at 120.662 kb on + strand, within COO64_RS15515at 120.662 kb on + strand, within COO64_RS15515at 120.662 kb on + strand, within COO64_RS15515at 120.662 kb on + strand, within COO64_RS15515at 120.662 kb on + strand, within COO64_RS15515at 120.938 kb on + strandat 120.938 kb on + strandat 121.428 kb on + strandat 121.464 kb on + strandat 121.464 kb on + strandat 121.464 kb on + strandat 121.465 kb on - strandat 121.465 kb on - strandat 121.465 kb on - strandat 121.465 kb on - strandat 121.465 kb on - strandat 121.465 kb on - strandat 121.465 kb on - strandat 121.465 kb on - strandat 122.027 kb on + strand, within COO64_RS15525at 122.083 kb on + strand, within COO64_RS15525at 122.083 kb on + strand, within COO64_RS15525at 122.083 kb on + strand, within COO64_RS15525at 122.083 kb on + strand, within COO64_RS15525at 122.083 kb on + strand, within COO64_RS15525at 122.083 kb on + strand, within COO64_RS15525at 122.083 kb on + strand, within COO64_RS15525at 122.083 kb on + strand, within COO64_RS15525at 122.083 kb on + strand, within COO64_RS15525at 122.083 kb on + strand, within COO64_RS15525at 122.312 kb on + strandat 122.319 kb on + strandat 122.319 kb on + strandat 122.319 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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120,492 + COO64_RS15515 0.50 -0.7
120,492 + COO64_RS15515 0.50 +0.8
120,590 + COO64_RS15515 0.59 -0.8
120,590 + COO64_RS15515 0.59 -0.6
120,662 + COO64_RS15515 0.66 -0.9
120,662 + COO64_RS15515 0.66 -0.1
120,662 + COO64_RS15515 0.66 +0.4
120,662 + COO64_RS15515 0.66 +0.4
120,662 + COO64_RS15515 0.66 -0.1
120,662 + COO64_RS15515 0.66 +0.6
120,662 + COO64_RS15515 0.66 -0.4
120,662 + COO64_RS15515 0.66 -0.4
120,938 + +0.4
120,938 + +0.7
121,428 + +0.1
121,464 + -0.1
121,464 + +1.0
121,464 + +0.3
121,465 - -0.6
121,465 - -1.0
121,465 - +0.9
121,465 - -0.7
121,465 - +0.2
121,465 - -0.6
121,465 - -1.1
121,465 - -1.0
122,027 + COO64_RS15525 0.64 -1.8
122,083 + COO64_RS15525 0.70 -1.1
122,083 + COO64_RS15525 0.70 -0.8
122,083 + COO64_RS15525 0.70 -1.0
122,083 + COO64_RS15525 0.70 -0.1
122,083 + COO64_RS15525 0.70 -0.3
122,083 + COO64_RS15525 0.70 -1.4
122,083 + COO64_RS15525 0.70 +1.0
122,083 + COO64_RS15525 0.70 -0.5
122,083 + COO64_RS15525 0.70 -0.1
122,083 + COO64_RS15525 0.70 -0.8
122,312 + +2.4
122,319 + -1.1
122,319 + -1.2
122,319 + +0.3

Or see this region's nucleotide sequence