Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS14935

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS14930 and COO64_RS14935 are separated by 137 nucleotidesCOO64_RS14935 and COO64_RS14940 are separated by 12 nucleotidesCOO64_RS14940 and COO64_RS14945 are separated by 10 nucleotidesCOO64_RS14945 and COO64_RS14950 are separated by 73 nucleotides COO64_RS14930: COO64_RS14930 - fimbrial protein, at 544,806 to 545,798 _RS14930 COO64_RS14935: COO64_RS14935 - VOC family protein, at 545,936 to 546,361 _RS14935 COO64_RS14940: COO64_RS14940 - DUF2867 domain-containing protein, at 546,374 to 546,901 _RS14940 COO64_RS14945: COO64_RS14945 - hypothetical protein, at 546,912 to 547,193 _RS14945 COO64_RS14950: COO64_RS14950 - DUF3016 domain-containing protein, at 547,267 to 547,791 _RS14950 Position (kb) 545 546 547Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 545.043 kb on + strand, within COO64_RS14930at 545.044 kb on - strand, within COO64_RS14930at 545.044 kb on - strand, within COO64_RS14930at 545.044 kb on - strand, within COO64_RS14930at 545.049 kb on + strand, within COO64_RS14930at 545.050 kb on - strand, within COO64_RS14930at 545.050 kb on - strand, within COO64_RS14930at 545.050 kb on - strand, within COO64_RS14930at 545.103 kb on + strand, within COO64_RS14930at 545.103 kb on + strand, within COO64_RS14930at 545.103 kb on + strand, within COO64_RS14930at 545.103 kb on + strand, within COO64_RS14930at 545.103 kb on + strand, within COO64_RS14930at 545.104 kb on - strand, within COO64_RS14930at 545.104 kb on - strand, within COO64_RS14930at 545.104 kb on - strand, within COO64_RS14930at 545.118 kb on + strand, within COO64_RS14930at 545.118 kb on + strand, within COO64_RS14930at 545.118 kb on + strand, within COO64_RS14930at 545.118 kb on + strand, within COO64_RS14930at 545.118 kb on + strand, within COO64_RS14930at 545.118 kb on + strand, within COO64_RS14930at 545.119 kb on - strand, within COO64_RS14930at 545.119 kb on - strand, within COO64_RS14930at 545.119 kb on - strand, within COO64_RS14930at 545.119 kb on - strand, within COO64_RS14930at 545.119 kb on - strand, within COO64_RS14930at 545.125 kb on - strand, within COO64_RS14930at 545.226 kb on + strand, within COO64_RS14930at 545.227 kb on - strand, within COO64_RS14930at 545.264 kb on + strand, within COO64_RS14930at 545.282 kb on + strand, within COO64_RS14930at 545.282 kb on + strand, within COO64_RS14930at 545.349 kb on + strand, within COO64_RS14930at 545.350 kb on - strand, within COO64_RS14930at 545.350 kb on - strand, within COO64_RS14930at 545.485 kb on + strand, within COO64_RS14930at 545.485 kb on + strand, within COO64_RS14930at 545.485 kb on + strand, within COO64_RS14930at 545.485 kb on + strand, within COO64_RS14930at 545.486 kb on - strand, within COO64_RS14930at 545.486 kb on - strand, within COO64_RS14930at 545.486 kb on - strand, within COO64_RS14930at 545.561 kb on + strand, within COO64_RS14930at 545.561 kb on + strand, within COO64_RS14930at 545.562 kb on - strand, within COO64_RS14930at 545.562 kb on - strand, within COO64_RS14930at 545.562 kb on - strand, within COO64_RS14930at 545.562 kb on - strand, within COO64_RS14930at 545.562 kb on - strand, within COO64_RS14930at 545.562 kb on - strand, within COO64_RS14930at 545.783 kb on + strandat 545.791 kb on - strandat 545.796 kb on + strandat 545.796 kb on + strandat 545.796 kb on + strandat 545.796 kb on + strandat 545.796 kb on + strandat 545.797 kb on - strandat 545.797 kb on - strandat 545.797 kb on - strandat 545.797 kb on - strandat 545.797 kb on - strandat 545.797 kb on - strandat 545.797 kb on - strandat 545.815 kb on - strandat 545.917 kb on - strandat 545.923 kb on + strandat 545.923 kb on + strandat 545.935 kb on + strandat 545.936 kb on - strandat 545.936 kb on - strandat 546.002 kb on + strand, within COO64_RS14935at 546.002 kb on + strand, within COO64_RS14935at 546.222 kb on - strand, within COO64_RS14935at 546.276 kb on + strand, within COO64_RS14935at 546.277 kb on - strand, within COO64_RS14935at 546.277 kb on - strand, within COO64_RS14935at 546.315 kb on - strand, within COO64_RS14935at 546.315 kb on - strand, within COO64_RS14935at 546.315 kb on - strand, within COO64_RS14935at 546.359 kb on + strandat 546.638 kb on + strand, within COO64_RS14940at 546.638 kb on + strand, within COO64_RS14940at 546.639 kb on - strand, within COO64_RS14940at 546.696 kb on + strand, within COO64_RS14940at 546.696 kb on + strand, within COO64_RS14940at 546.696 kb on + strand, within COO64_RS14940at 546.696 kb on + strand, within COO64_RS14940at 546.697 kb on - strand, within COO64_RS14940at 546.731 kb on + strand, within COO64_RS14940at 546.731 kb on + strand, within COO64_RS14940at 546.731 kb on + strand, within COO64_RS14940at 546.731 kb on + strand, within COO64_RS14940at 546.731 kb on + strand, within COO64_RS14940at 546.731 kb on + strand, within COO64_RS14940at 546.731 kb on + strand, within COO64_RS14940at 546.731 kb on + strand, within COO64_RS14940at 546.731 kb on + strand, within COO64_RS14940at 546.732 kb on - strand, within COO64_RS14940at 546.732 kb on - strand, within COO64_RS14940at 546.732 kb on - strand, within COO64_RS14940at 546.732 kb on - strand, within COO64_RS14940at 546.732 kb on - strand, within COO64_RS14940at 546.732 kb on - strand, within COO64_RS14940at 546.733 kb on + strand, within COO64_RS14940at 546.733 kb on + strand, within COO64_RS14940at 546.733 kb on + strand, within COO64_RS14940at 546.733 kb on + strand, within COO64_RS14940at 546.734 kb on - strand, within COO64_RS14940at 546.734 kb on - strand, within COO64_RS14940at 546.734 kb on - strand, within COO64_RS14940at 546.734 kb on - strand, within COO64_RS14940at 546.827 kb on + strand, within COO64_RS14940at 546.827 kb on + strand, within COO64_RS14940at 546.827 kb on + strand, within COO64_RS14940at 546.827 kb on + strand, within COO64_RS14940at 546.827 kb on + strand, within COO64_RS14940at 546.827 kb on + strand, within COO64_RS14940at 546.828 kb on - strand, within COO64_RS14940at 546.828 kb on - strand, within COO64_RS14940at 546.828 kb on - strand, within COO64_RS14940at 546.900 kb on - strandat 546.900 kb on - strandat 547.142 kb on + strand, within COO64_RS14945at 547.180 kb on + strandat 547.199 kb on - strandat 547.199 kb on - strandat 547.294 kb on + strandat 547.343 kb on + strand, within COO64_RS14950at 547.343 kb on + strand, within COO64_RS14950at 547.344 kb on - strand, within COO64_RS14950at 547.344 kb on - strand, within COO64_RS14950

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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545,043 + COO64_RS14930 0.24 -0.0
545,044 - COO64_RS14930 0.24 +0.4
545,044 - COO64_RS14930 0.24 -0.3
545,044 - COO64_RS14930 0.24 -0.4
545,049 + COO64_RS14930 0.24 +0.8
545,050 - COO64_RS14930 0.25 +0.6
545,050 - COO64_RS14930 0.25 +2.0
545,050 - COO64_RS14930 0.25 -0.2
545,103 + COO64_RS14930 0.30 +0.2
545,103 + COO64_RS14930 0.30 +0.1
545,103 + COO64_RS14930 0.30 +0.5
545,103 + COO64_RS14930 0.30 +1.2
545,103 + COO64_RS14930 0.30 +1.2
545,104 - COO64_RS14930 0.30 +0.4
545,104 - COO64_RS14930 0.30 -1.3
545,104 - COO64_RS14930 0.30 -0.0
545,118 + COO64_RS14930 0.31 -0.0
545,118 + COO64_RS14930 0.31 +0.9
545,118 + COO64_RS14930 0.31 -0.5
545,118 + COO64_RS14930 0.31 +0.2
545,118 + COO64_RS14930 0.31 -0.1
545,118 + COO64_RS14930 0.31 +0.5
545,119 - COO64_RS14930 0.32 +0.8
545,119 - COO64_RS14930 0.32 +0.8
545,119 - COO64_RS14930 0.32 -0.4
545,119 - COO64_RS14930 0.32 +0.3
545,119 - COO64_RS14930 0.32 -2.1
545,125 - COO64_RS14930 0.32 -0.4
545,226 + COO64_RS14930 0.42 +0.2
545,227 - COO64_RS14930 0.42 -0.6
545,264 + COO64_RS14930 0.46 -0.6
545,282 + COO64_RS14930 0.48 -0.2
545,282 + COO64_RS14930 0.48 -1.9
545,349 + COO64_RS14930 0.55 -0.2
545,350 - COO64_RS14930 0.55 +0.2
545,350 - COO64_RS14930 0.55 +0.2
545,485 + COO64_RS14930 0.68 -1.1
545,485 + COO64_RS14930 0.68 +0.0
545,485 + COO64_RS14930 0.68 -0.4
545,485 + COO64_RS14930 0.68 -0.3
545,486 - COO64_RS14930 0.68 -0.2
545,486 - COO64_RS14930 0.68 -0.4
545,486 - COO64_RS14930 0.68 -0.4
545,561 + COO64_RS14930 0.76 +0.3
545,561 + COO64_RS14930 0.76 +0.6
545,562 - COO64_RS14930 0.76 +0.2
545,562 - COO64_RS14930 0.76 +0.9
545,562 - COO64_RS14930 0.76 +0.1
545,562 - COO64_RS14930 0.76 +0.3
545,562 - COO64_RS14930 0.76 -0.9
545,562 - COO64_RS14930 0.76 -0.3
545,783 + +0.1
545,791 - -0.4
545,796 + +0.4
545,796 + -0.1
545,796 + +0.2
545,796 + -0.2
545,796 + +0.0
545,797 - +0.2
545,797 - -0.5
545,797 - -1.1
545,797 - +0.7
545,797 - -0.5
545,797 - +0.3
545,797 - +0.6
545,815 - -0.3
545,917 - -0.3
545,923 + -0.3
545,923 + +0.2
545,935 + +0.1
545,936 - -0.0
545,936 - -0.5
546,002 + COO64_RS14935 0.15 -0.1
546,002 + COO64_RS14935 0.15 +0.3
546,222 - COO64_RS14935 0.67 -1.7
546,276 + COO64_RS14935 0.80 -0.6
546,277 - COO64_RS14935 0.80 -3.0
546,277 - COO64_RS14935 0.80 -1.0
546,315 - COO64_RS14935 0.89 -0.8
546,315 - COO64_RS14935 0.89 -0.5
546,315 - COO64_RS14935 0.89 +0.3
546,359 + -0.1
546,638 + COO64_RS14940 0.50 -1.0
546,638 + COO64_RS14940 0.50 +0.9
546,639 - COO64_RS14940 0.50 +0.2
546,696 + COO64_RS14940 0.61 -0.2
546,696 + COO64_RS14940 0.61 +1.0
546,696 + COO64_RS14940 0.61 +0.2
546,696 + COO64_RS14940 0.61 +0.4
546,697 - COO64_RS14940 0.61 +1.0
546,731 + COO64_RS14940 0.68 -1.5
546,731 + COO64_RS14940 0.68 +0.5
546,731 + COO64_RS14940 0.68 +1.5
546,731 + COO64_RS14940 0.68 -1.1
546,731 + COO64_RS14940 0.68 -0.7
546,731 + COO64_RS14940 0.68 +1.6
546,731 + COO64_RS14940 0.68 -1.0
546,731 + COO64_RS14940 0.68 +0.5
546,731 + COO64_RS14940 0.68 +0.5
546,732 - COO64_RS14940 0.68 +0.4
546,732 - COO64_RS14940 0.68 +0.6
546,732 - COO64_RS14940 0.68 +0.8
546,732 - COO64_RS14940 0.68 +0.1
546,732 - COO64_RS14940 0.68 -0.3
546,732 - COO64_RS14940 0.68 -0.0
546,733 + COO64_RS14940 0.68 -0.6
546,733 + COO64_RS14940 0.68 -0.4
546,733 + COO64_RS14940 0.68 +0.4
546,733 + COO64_RS14940 0.68 +1.0
546,734 - COO64_RS14940 0.68 +1.0
546,734 - COO64_RS14940 0.68 +1.3
546,734 - COO64_RS14940 0.68 +0.1
546,734 - COO64_RS14940 0.68 +0.8
546,827 + COO64_RS14940 0.86 +0.0
546,827 + COO64_RS14940 0.86 +0.2
546,827 + COO64_RS14940 0.86 -0.8
546,827 + COO64_RS14940 0.86 +1.1
546,827 + COO64_RS14940 0.86 +0.5
546,827 + COO64_RS14940 0.86 +0.3
546,828 - COO64_RS14940 0.86 +0.4
546,828 - COO64_RS14940 0.86 +0.4
546,828 - COO64_RS14940 0.86 +0.2
546,900 - +0.1
546,900 - +0.2
547,142 + COO64_RS14945 0.82 -0.4
547,180 + -0.7
547,199 - -0.7
547,199 - -1.0
547,294 + +0.6
547,343 + COO64_RS14950 0.14 +0.2
547,343 + COO64_RS14950 0.14 +0.7
547,344 - COO64_RS14950 0.15 -0.2
547,344 - COO64_RS14950 0.15 -0.8

Or see this region's nucleotide sequence