Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS14900

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS14895 and COO64_RS14900 are separated by 314 nucleotidesCOO64_RS14900 and COO64_RS14905 are separated by 3 nucleotidesCOO64_RS14905 and COO64_RS14910 are separated by 116 nucleotides COO64_RS14895: COO64_RS14895 - cystathionine beta-synthase, at 539,067 to 540,443 _RS14895 COO64_RS14900: COO64_RS14900 - SDR family oxidoreductase, at 540,758 to 541,801 _RS14900 COO64_RS14905: COO64_RS14905 - ester cyclase, at 541,805 to 542,224 _RS14905 COO64_RS14910: COO64_RS14910 - LysR family transcriptional regulator, at 542,341 to 543,246 _RS14910 Position (kb) 540 541 542Strain fitness (log2 ratio) -3 -2 -1 0 1at 539.775 kb on - strand, within COO64_RS14895at 539.798 kb on - strand, within COO64_RS14895at 539.915 kb on + strand, within COO64_RS14895at 539.915 kb on + strand, within COO64_RS14895at 539.916 kb on - strand, within COO64_RS14895at 539.916 kb on - strand, within COO64_RS14895at 539.916 kb on - strand, within COO64_RS14895at 540.058 kb on + strand, within COO64_RS14895at 540.058 kb on + strand, within COO64_RS14895at 540.058 kb on + strand, within COO64_RS14895at 540.061 kb on + strand, within COO64_RS14895at 540.062 kb on - strand, within COO64_RS14895at 540.399 kb on - strandat 540.537 kb on + strandat 540.537 kb on + strandat 540.537 kb on + strandat 540.538 kb on - strandat 540.538 kb on - strandat 540.538 kb on - strandat 540.538 kb on - strandat 540.538 kb on - strandat 540.538 kb on - strandat 540.538 kb on - strandat 540.538 kb on - strandat 540.538 kb on - strandat 540.538 kb on - strandat 540.614 kb on + strandat 540.615 kb on - strandat 540.615 kb on - strandat 540.615 kb on - strandat 540.759 kb on + strandat 540.760 kb on - strandat 540.760 kb on - strandat 540.822 kb on - strandat 540.901 kb on + strand, within COO64_RS14900at 540.923 kb on + strand, within COO64_RS14900at 540.976 kb on - strand, within COO64_RS14900at 541.002 kb on + strand, within COO64_RS14900at 541.002 kb on + strand, within COO64_RS14900at 541.002 kb on + strand, within COO64_RS14900at 541.002 kb on + strand, within COO64_RS14900at 541.004 kb on + strand, within COO64_RS14900at 541.005 kb on - strand, within COO64_RS14900at 541.005 kb on - strand, within COO64_RS14900at 541.068 kb on - strand, within COO64_RS14900at 541.107 kb on + strand, within COO64_RS14900at 541.107 kb on + strand, within COO64_RS14900at 541.107 kb on + strand, within COO64_RS14900at 541.108 kb on - strand, within COO64_RS14900at 541.142 kb on + strand, within COO64_RS14900at 541.142 kb on + strand, within COO64_RS14900at 541.142 kb on + strand, within COO64_RS14900at 541.142 kb on + strand, within COO64_RS14900at 541.142 kb on + strand, within COO64_RS14900at 541.142 kb on + strand, within COO64_RS14900at 541.142 kb on + strand, within COO64_RS14900at 541.142 kb on + strand, within COO64_RS14900at 541.143 kb on - strand, within COO64_RS14900at 541.143 kb on - strand, within COO64_RS14900at 541.143 kb on - strand, within COO64_RS14900at 541.143 kb on - strand, within COO64_RS14900at 541.144 kb on + strand, within COO64_RS14900at 541.144 kb on + strand, within COO64_RS14900at 541.144 kb on + strand, within COO64_RS14900at 541.186 kb on + strand, within COO64_RS14900at 541.256 kb on + strand, within COO64_RS14900at 541.256 kb on + strand, within COO64_RS14900at 541.256 kb on + strand, within COO64_RS14900at 541.256 kb on + strand, within COO64_RS14900at 541.257 kb on - strand, within COO64_RS14900at 541.352 kb on + strand, within COO64_RS14900at 541.365 kb on + strand, within COO64_RS14900at 541.365 kb on + strand, within COO64_RS14900at 541.368 kb on + strand, within COO64_RS14900at 541.368 kb on + strand, within COO64_RS14900at 541.368 kb on + strand, within COO64_RS14900at 541.368 kb on + strand, within COO64_RS14900at 541.368 kb on + strand, within COO64_RS14900at 541.369 kb on - strand, within COO64_RS14900at 541.369 kb on - strand, within COO64_RS14900at 541.369 kb on - strand, within COO64_RS14900at 541.369 kb on - strand, within COO64_RS14900at 541.369 kb on - strand, within COO64_RS14900at 541.453 kb on + strand, within COO64_RS14900at 541.453 kb on + strand, within COO64_RS14900at 541.453 kb on + strand, within COO64_RS14900at 541.453 kb on + strand, within COO64_RS14900at 541.453 kb on + strand, within COO64_RS14900at 541.454 kb on - strand, within COO64_RS14900at 541.454 kb on - strand, within COO64_RS14900at 541.454 kb on - strand, within COO64_RS14900at 541.454 kb on - strand, within COO64_RS14900at 541.454 kb on - strand, within COO64_RS14900at 541.454 kb on - strand, within COO64_RS14900at 541.454 kb on - strand, within COO64_RS14900at 541.454 kb on - strand, within COO64_RS14900at 541.454 kb on - strand, within COO64_RS14900at 541.469 kb on + strand, within COO64_RS14900at 541.483 kb on - strand, within COO64_RS14900at 541.483 kb on - strand, within COO64_RS14900at 541.557 kb on + strand, within COO64_RS14900at 541.557 kb on + strand, within COO64_RS14900at 541.557 kb on + strand, within COO64_RS14900at 541.557 kb on + strand, within COO64_RS14900at 541.557 kb on + strand, within COO64_RS14900at 541.557 kb on + strand, within COO64_RS14900at 541.558 kb on - strand, within COO64_RS14900at 541.558 kb on - strand, within COO64_RS14900at 541.558 kb on - strand, within COO64_RS14900at 541.558 kb on - strand, within COO64_RS14900at 541.558 kb on - strand, within COO64_RS14900at 541.558 kb on - strand, within COO64_RS14900at 541.561 kb on + strand, within COO64_RS14900at 541.561 kb on + strand, within COO64_RS14900at 541.582 kb on + strand, within COO64_RS14900at 541.582 kb on + strand, within COO64_RS14900at 541.582 kb on + strand, within COO64_RS14900at 541.583 kb on - strand, within COO64_RS14900at 541.725 kb on + strandat 541.905 kb on + strand, within COO64_RS14905at 541.955 kb on + strand, within COO64_RS14905at 541.985 kb on + strand, within COO64_RS14905at 541.986 kb on - strand, within COO64_RS14905at 542.124 kb on + strand, within COO64_RS14905at 542.162 kb on + strand, within COO64_RS14905at 542.162 kb on + strand, within COO64_RS14905at 542.162 kb on + strand, within COO64_RS14905at 542.163 kb on - strand, within COO64_RS14905at 542.163 kb on - strand, within COO64_RS14905at 542.163 kb on - strand, within COO64_RS14905at 542.218 kb on + strandat 542.219 kb on - strandat 542.259 kb on + strandat 542.259 kb on + strandat 542.259 kb on + strandat 542.259 kb on + strandat 542.259 kb on + strandat 542.259 kb on + strandat 542.260 kb on - strandat 542.260 kb on - strandat 542.260 kb on - strandat 542.261 kb on + strandat 542.261 kb on + strandat 542.261 kb on + strandat 542.261 kb on + strandat 542.262 kb on - strandat 542.262 kb on - strandat 542.262 kb on - strandat 542.262 kb on - strandat 542.262 kb on - strandat 542.262 kb on - strandat 542.300 kb on + strandat 542.340 kb on + strandat 542.341 kb on - strandat 542.378 kb on + strandat 542.442 kb on + strand, within COO64_RS14910at 542.667 kb on + strand, within COO64_RS14910at 542.774 kb on + strand, within COO64_RS14910

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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539,775 - COO64_RS14895 0.51 +0.1
539,798 - COO64_RS14895 0.53 -0.7
539,915 + COO64_RS14895 0.62 +0.8
539,915 + COO64_RS14895 0.62 -0.7
539,916 - COO64_RS14895 0.62 -0.4
539,916 - COO64_RS14895 0.62 +1.0
539,916 - COO64_RS14895 0.62 +1.7
540,058 + COO64_RS14895 0.72 -0.2
540,058 + COO64_RS14895 0.72 -0.0
540,058 + COO64_RS14895 0.72 +0.5
540,061 + COO64_RS14895 0.72 +0.5
540,062 - COO64_RS14895 0.72 +0.6
540,399 - -0.4
540,537 + +0.1
540,537 + +1.3
540,537 + +1.1
540,538 - -1.0
540,538 - +0.2
540,538 - -0.8
540,538 - +0.6
540,538 - +0.7
540,538 - -1.3
540,538 - -0.6
540,538 - +0.6
540,538 - +0.8
540,538 - +0.7
540,614 + -1.3
540,615 - -0.4
540,615 - +1.6
540,615 - +0.4
540,759 + -1.0
540,760 - -0.7
540,760 - +0.1
540,822 - +0.1
540,901 + COO64_RS14900 0.14 +0.3
540,923 + COO64_RS14900 0.16 -1.3
540,976 - COO64_RS14900 0.21 -1.2
541,002 + COO64_RS14900 0.23 -0.1
541,002 + COO64_RS14900 0.23 +0.5
541,002 + COO64_RS14900 0.23 -0.1
541,002 + COO64_RS14900 0.23 -0.5
541,004 + COO64_RS14900 0.24 -0.1
541,005 - COO64_RS14900 0.24 +1.6
541,005 - COO64_RS14900 0.24 +0.2
541,068 - COO64_RS14900 0.30 +0.5
541,107 + COO64_RS14900 0.33 -0.8
541,107 + COO64_RS14900 0.33 +0.1
541,107 + COO64_RS14900 0.33 +0.9
541,108 - COO64_RS14900 0.34 -0.5
541,142 + COO64_RS14900 0.37 +0.6
541,142 + COO64_RS14900 0.37 +0.1
541,142 + COO64_RS14900 0.37 +0.1
541,142 + COO64_RS14900 0.37 +0.5
541,142 + COO64_RS14900 0.37 +0.0
541,142 + COO64_RS14900 0.37 +0.7
541,142 + COO64_RS14900 0.37 -1.6
541,142 + COO64_RS14900 0.37 -0.7
541,143 - COO64_RS14900 0.37 +0.4
541,143 - COO64_RS14900 0.37 -2.7
541,143 - COO64_RS14900 0.37 -1.1
541,143 - COO64_RS14900 0.37 +0.0
541,144 + COO64_RS14900 0.37 -0.5
541,144 + COO64_RS14900 0.37 +0.2
541,144 + COO64_RS14900 0.37 +1.0
541,186 + COO64_RS14900 0.41 +0.6
541,256 + COO64_RS14900 0.48 -0.2
541,256 + COO64_RS14900 0.48 -2.1
541,256 + COO64_RS14900 0.48 -0.1
541,256 + COO64_RS14900 0.48 +0.3
541,257 - COO64_RS14900 0.48 -0.1
541,352 + COO64_RS14900 0.57 +0.2
541,365 + COO64_RS14900 0.58 -1.6
541,365 + COO64_RS14900 0.58 +1.0
541,368 + COO64_RS14900 0.58 +0.7
541,368 + COO64_RS14900 0.58 +0.1
541,368 + COO64_RS14900 0.58 -0.4
541,368 + COO64_RS14900 0.58 -0.4
541,368 + COO64_RS14900 0.58 +0.6
541,369 - COO64_RS14900 0.59 +1.0
541,369 - COO64_RS14900 0.59 -0.0
541,369 - COO64_RS14900 0.59 -0.4
541,369 - COO64_RS14900 0.59 +1.5
541,369 - COO64_RS14900 0.59 -0.1
541,453 + COO64_RS14900 0.67 -0.4
541,453 + COO64_RS14900 0.67 +0.1
541,453 + COO64_RS14900 0.67 -0.0
541,453 + COO64_RS14900 0.67 +0.2
541,453 + COO64_RS14900 0.67 +0.5
541,454 - COO64_RS14900 0.67 -0.4
541,454 - COO64_RS14900 0.67 +1.5
541,454 - COO64_RS14900 0.67 -0.0
541,454 - COO64_RS14900 0.67 +0.9
541,454 - COO64_RS14900 0.67 +0.9
541,454 - COO64_RS14900 0.67 -1.0
541,454 - COO64_RS14900 0.67 -0.5
541,454 - COO64_RS14900 0.67 +0.4
541,454 - COO64_RS14900 0.67 +1.0
541,469 + COO64_RS14900 0.68 +0.8
541,483 - COO64_RS14900 0.69 +0.2
541,483 - COO64_RS14900 0.69 +0.1
541,557 + COO64_RS14900 0.77 -0.1
541,557 + COO64_RS14900 0.77 +0.2
541,557 + COO64_RS14900 0.77 -0.5
541,557 + COO64_RS14900 0.77 +0.3
541,557 + COO64_RS14900 0.77 +0.5
541,557 + COO64_RS14900 0.77 +0.2
541,558 - COO64_RS14900 0.77 -1.5
541,558 - COO64_RS14900 0.77 -0.8
541,558 - COO64_RS14900 0.77 +0.7
541,558 - COO64_RS14900 0.77 -1.1
541,558 - COO64_RS14900 0.77 +0.5
541,558 - COO64_RS14900 0.77 -0.2
541,561 + COO64_RS14900 0.77 +0.8
541,561 + COO64_RS14900 0.77 +0.1
541,582 + COO64_RS14900 0.79 +0.9
541,582 + COO64_RS14900 0.79 -0.0
541,582 + COO64_RS14900 0.79 -1.7
541,583 - COO64_RS14900 0.79 -0.0
541,725 + -1.7
541,905 + COO64_RS14905 0.24 -0.4
541,955 + COO64_RS14905 0.36 -0.0
541,985 + COO64_RS14905 0.43 -1.8
541,986 - COO64_RS14905 0.43 +0.5
542,124 + COO64_RS14905 0.76 -0.9
542,162 + COO64_RS14905 0.85 +0.3
542,162 + COO64_RS14905 0.85 -0.5
542,162 + COO64_RS14905 0.85 -0.5
542,163 - COO64_RS14905 0.85 -0.2
542,163 - COO64_RS14905 0.85 +0.6
542,163 - COO64_RS14905 0.85 -0.1
542,218 + +0.1
542,219 - -1.4
542,259 + +0.1
542,259 + -0.2
542,259 + -0.5
542,259 + +0.0
542,259 + +0.2
542,259 + +1.0
542,260 - +0.8
542,260 - +0.8
542,260 - -1.3
542,261 + +0.5
542,261 + -0.1
542,261 + -0.2
542,261 + -0.4
542,262 - -2.0
542,262 - -0.7
542,262 - -0.2
542,262 - -3.1
542,262 - -0.0
542,262 - -0.0
542,300 + -1.5
542,340 + +0.8
542,341 - -1.0
542,378 + -0.8
542,442 + COO64_RS14910 0.11 -0.0
542,667 + COO64_RS14910 0.36 +0.9
542,774 + COO64_RS14910 0.48 +0.8

Or see this region's nucleotide sequence