Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS13385

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS27755 and COO64_RS13385 are separated by 235 nucleotidesCOO64_RS13385 and COO64_RS13390 overlap by 4 nucleotidesCOO64_RS13390 and COO64_RS13395 are separated by 91 nucleotides COO64_RS27755: COO64_RS27755 - cache domain-containing protein, at 227,506 to 228,543 _RS27755 COO64_RS13385: COO64_RS13385 - outer membrane protein assembly factor BamE, at 228,779 to 229,033 _RS13385 COO64_RS13390: COO64_RS13390 - lipocalin family protein, at 229,030 to 229,605 _RS13390 COO64_RS13395: COO64_RS13395 - formimidoylglutamate deiminase, at 229,697 to 231,061 _RS13395 Position (kb) 228 229 230Strain fitness (log2 ratio) -2 -1 0 1 2at 228.079 kb on - strand, within COO64_RS27755at 228.111 kb on - strand, within COO64_RS27755at 228.111 kb on - strand, within COO64_RS27755at 228.111 kb on - strand, within COO64_RS27755at 228.155 kb on + strand, within COO64_RS27755at 228.155 kb on + strand, within COO64_RS27755at 228.155 kb on + strand, within COO64_RS27755at 228.155 kb on + strand, within COO64_RS27755at 228.155 kb on + strand, within COO64_RS27755at 228.156 kb on - strand, within COO64_RS27755at 228.156 kb on - strand, within COO64_RS27755at 228.156 kb on - strand, within COO64_RS27755at 228.156 kb on - strand, within COO64_RS27755at 228.179 kb on + strand, within COO64_RS27755at 228.218 kb on + strand, within COO64_RS27755at 228.218 kb on + strand, within COO64_RS27755at 228.219 kb on - strand, within COO64_RS27755at 228.219 kb on - strand, within COO64_RS27755at 228.219 kb on - strand, within COO64_RS27755at 228.219 kb on - strand, within COO64_RS27755at 228.219 kb on - strand, within COO64_RS27755at 228.239 kb on + strand, within COO64_RS27755at 228.239 kb on + strand, within COO64_RS27755at 228.240 kb on - strand, within COO64_RS27755at 228.240 kb on - strand, within COO64_RS27755at 228.263 kb on + strand, within COO64_RS27755at 228.263 kb on + strand, within COO64_RS27755at 228.263 kb on + strand, within COO64_RS27755at 228.263 kb on + strand, within COO64_RS27755at 228.263 kb on + strand, within COO64_RS27755at 228.263 kb on + strand, within COO64_RS27755at 228.264 kb on - strand, within COO64_RS27755at 228.264 kb on - strand, within COO64_RS27755at 228.264 kb on - strand, within COO64_RS27755at 228.264 kb on - strand, within COO64_RS27755at 228.264 kb on - strand, within COO64_RS27755at 228.421 kb on - strand, within COO64_RS27755at 228.449 kb on + strandat 228.449 kb on + strandat 228.725 kb on + strandat 228.725 kb on + strandat 228.725 kb on + strandat 228.725 kb on + strandat 228.725 kb on + strandat 228.725 kb on + strandat 228.725 kb on + strandat 228.725 kb on + strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.726 kb on - strandat 228.737 kb on - strandat 228.855 kb on - strand, within COO64_RS13385at 228.974 kb on - strand, within COO64_RS13385at 228.974 kb on - strand, within COO64_RS13385at 228.986 kb on + strand, within COO64_RS13385at 229.010 kb on + strandat 229.011 kb on - strandat 229.011 kb on - strandat 229.163 kb on - strand, within COO64_RS13390at 229.163 kb on - strand, within COO64_RS13390at 229.186 kb on + strand, within COO64_RS13390at 229.186 kb on + strand, within COO64_RS13390at 229.186 kb on + strand, within COO64_RS13390at 229.186 kb on + strand, within COO64_RS13390at 229.187 kb on - strand, within COO64_RS13390at 229.187 kb on - strand, within COO64_RS13390at 229.187 kb on - strand, within COO64_RS13390at 229.222 kb on + strand, within COO64_RS13390at 229.222 kb on + strand, within COO64_RS13390at 229.222 kb on + strand, within COO64_RS13390at 229.222 kb on + strand, within COO64_RS13390at 229.222 kb on + strand, within COO64_RS13390at 229.222 kb on + strand, within COO64_RS13390at 229.222 kb on + strand, within COO64_RS13390at 229.222 kb on + strand, within COO64_RS13390at 229.223 kb on - strand, within COO64_RS13390at 229.223 kb on - strand, within COO64_RS13390at 229.223 kb on - strand, within COO64_RS13390at 229.223 kb on - strand, within COO64_RS13390at 229.223 kb on - strand, within COO64_RS13390at 229.223 kb on - strand, within COO64_RS13390at 229.400 kb on - strand, within COO64_RS13390at 229.411 kb on + strand, within COO64_RS13390at 229.411 kb on + strand, within COO64_RS13390at 229.411 kb on + strand, within COO64_RS13390at 229.412 kb on - strand, within COO64_RS13390at 229.426 kb on + strand, within COO64_RS13390at 229.426 kb on + strand, within COO64_RS13390at 229.426 kb on + strand, within COO64_RS13390at 229.426 kb on + strand, within COO64_RS13390at 229.427 kb on - strand, within COO64_RS13390at 229.427 kb on - strand, within COO64_RS13390at 229.462 kb on + strand, within COO64_RS13390at 229.463 kb on - strand, within COO64_RS13390at 229.463 kb on - strand, within COO64_RS13390at 229.463 kb on - strand, within COO64_RS13390at 229.463 kb on - strand, within COO64_RS13390at 229.463 kb on - strand, within COO64_RS13390at 229.472 kb on + strand, within COO64_RS13390at 229.472 kb on + strand, within COO64_RS13390at 229.473 kb on - strand, within COO64_RS13390at 229.473 kb on - strand, within COO64_RS13390at 229.483 kb on - strand, within COO64_RS13390at 229.543 kb on + strand, within COO64_RS13390at 229.543 kb on + strand, within COO64_RS13390at 229.544 kb on - strand, within COO64_RS13390at 229.544 kb on - strand, within COO64_RS13390at 229.596 kb on + strandat 229.872 kb on + strand, within COO64_RS13395at 229.872 kb on + strand, within COO64_RS13395at 229.872 kb on + strand, within COO64_RS13395at 230.013 kb on + strand, within COO64_RS13395

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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228,079 - COO64_RS27755 0.55 -0.7
228,111 - COO64_RS27755 0.58 +1.3
228,111 - COO64_RS27755 0.58 +0.6
228,111 - COO64_RS27755 0.58 +0.6
228,155 + COO64_RS27755 0.63 -0.7
228,155 + COO64_RS27755 0.63 -1.3
228,155 + COO64_RS27755 0.63 -0.6
228,155 + COO64_RS27755 0.63 +0.5
228,155 + COO64_RS27755 0.63 +0.2
228,156 - COO64_RS27755 0.63 -0.8
228,156 - COO64_RS27755 0.63 -0.1
228,156 - COO64_RS27755 0.63 -0.2
228,156 - COO64_RS27755 0.63 +0.5
228,179 + COO64_RS27755 0.65 -2.2
228,218 + COO64_RS27755 0.69 +0.6
228,218 + COO64_RS27755 0.69 +0.2
228,219 - COO64_RS27755 0.69 +0.9
228,219 - COO64_RS27755 0.69 -0.2
228,219 - COO64_RS27755 0.69 +0.4
228,219 - COO64_RS27755 0.69 -0.5
228,219 - COO64_RS27755 0.69 -0.6
228,239 + COO64_RS27755 0.71 +0.7
228,239 + COO64_RS27755 0.71 +0.0
228,240 - COO64_RS27755 0.71 +1.3
228,240 - COO64_RS27755 0.71 -0.1
228,263 + COO64_RS27755 0.73 -0.5
228,263 + COO64_RS27755 0.73 -0.0
228,263 + COO64_RS27755 0.73 -1.4
228,263 + COO64_RS27755 0.73 -0.1
228,263 + COO64_RS27755 0.73 +0.5
228,263 + COO64_RS27755 0.73 +0.2
228,264 - COO64_RS27755 0.73 +0.8
228,264 - COO64_RS27755 0.73 -0.8
228,264 - COO64_RS27755 0.73 +0.3
228,264 - COO64_RS27755 0.73 -0.1
228,264 - COO64_RS27755 0.73 -0.1
228,421 - COO64_RS27755 0.88 +0.3
228,449 + -0.3
228,449 + +0.3
228,725 + -0.4
228,725 + +0.8
228,725 + -0.5
228,725 + +1.4
228,725 + -0.3
228,725 + -0.1
228,725 + -1.4
228,725 + -0.7
228,726 - -0.1
228,726 - +1.8
228,726 - +0.3
228,726 - +0.3
228,726 - -0.2
228,726 - +0.1
228,726 - +0.1
228,726 - -0.3
228,726 - -2.3
228,726 - -0.0
228,726 - -0.4
228,726 - +0.1
228,726 - -0.8
228,726 - +0.8
228,726 - -0.6
228,726 - -0.1
228,737 - -0.5
228,855 - COO64_RS13385 0.30 -0.8
228,974 - COO64_RS13385 0.76 -1.6
228,974 - COO64_RS13385 0.76 +0.3
228,986 + COO64_RS13385 0.81 -1.0
229,010 + -0.3
229,011 - +0.9
229,011 - -0.1
229,163 - COO64_RS13390 0.23 -1.0
229,163 - COO64_RS13390 0.23 +0.2
229,186 + COO64_RS13390 0.27 +0.2
229,186 + COO64_RS13390 0.27 +0.2
229,186 + COO64_RS13390 0.27 -0.9
229,186 + COO64_RS13390 0.27 -1.3
229,187 - COO64_RS13390 0.27 +0.6
229,187 - COO64_RS13390 0.27 -2.5
229,187 - COO64_RS13390 0.27 +1.2
229,222 + COO64_RS13390 0.33 -0.5
229,222 + COO64_RS13390 0.33 +0.8
229,222 + COO64_RS13390 0.33 -0.4
229,222 + COO64_RS13390 0.33 -0.3
229,222 + COO64_RS13390 0.33 +0.3
229,222 + COO64_RS13390 0.33 -0.1
229,222 + COO64_RS13390 0.33 -0.1
229,222 + COO64_RS13390 0.33 +0.5
229,223 - COO64_RS13390 0.34 +0.7
229,223 - COO64_RS13390 0.34 -0.7
229,223 - COO64_RS13390 0.34 -0.3
229,223 - COO64_RS13390 0.34 +0.2
229,223 - COO64_RS13390 0.34 -1.2
229,223 - COO64_RS13390 0.34 +0.7
229,400 - COO64_RS13390 0.64 -1.2
229,411 + COO64_RS13390 0.66 +0.3
229,411 + COO64_RS13390 0.66 -0.4
229,411 + COO64_RS13390 0.66 +0.4
229,412 - COO64_RS13390 0.66 -0.4
229,426 + COO64_RS13390 0.69 +0.3
229,426 + COO64_RS13390 0.69 +0.0
229,426 + COO64_RS13390 0.69 -1.3
229,426 + COO64_RS13390 0.69 -0.3
229,427 - COO64_RS13390 0.69 +0.7
229,427 - COO64_RS13390 0.69 +1.3
229,462 + COO64_RS13390 0.75 +0.1
229,463 - COO64_RS13390 0.75 +0.2
229,463 - COO64_RS13390 0.75 -0.0
229,463 - COO64_RS13390 0.75 -1.2
229,463 - COO64_RS13390 0.75 +0.8
229,463 - COO64_RS13390 0.75 +0.1
229,472 + COO64_RS13390 0.77 -0.2
229,472 + COO64_RS13390 0.77 +0.3
229,473 - COO64_RS13390 0.77 +0.1
229,473 - COO64_RS13390 0.77 -0.0
229,483 - COO64_RS13390 0.79 -1.6
229,543 + COO64_RS13390 0.89 -0.5
229,543 + COO64_RS13390 0.89 +0.7
229,544 - COO64_RS13390 0.89 +0.7
229,544 - COO64_RS13390 0.89 +0.7
229,596 + -0.2
229,872 + COO64_RS13395 0.13 -0.6
229,872 + COO64_RS13395 0.13 +0.8
229,872 + COO64_RS13395 0.13 -0.4
230,013 + COO64_RS13395 0.23 +0.3

Or see this region's nucleotide sequence