Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS11965

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS11955 and COO64_RS11960 are separated by 72 nucleotidesCOO64_RS11960 and COO64_RS11965 are separated by 2 nucleotidesCOO64_RS11965 and COO64_RS11970 are separated by 51 nucleotides COO64_RS11955: COO64_RS11955 - Nudix family hydrolase, at 206,984 to 207,928 _RS11955 COO64_RS11960: COO64_RS11960 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 208,001 to 208,561 _RS11960 COO64_RS11965: COO64_RS11965 - ATP-binding protein, at 208,564 to 210,576 _RS11965 COO64_RS11970: COO64_RS11970 - putative 2-dehydropantoate 2-reductase, at 210,628 to 211,545 _RS11970 Position (kb) 208 209 210 211Strain fitness (log2 ratio) -2 -1 0 1 2 3at 207.626 kb on + strand, within COO64_RS11955at 207.682 kb on + strand, within COO64_RS11955at 207.682 kb on + strand, within COO64_RS11955at 207.830 kb on + strand, within COO64_RS11955at 207.830 kb on + strand, within COO64_RS11955at 207.830 kb on + strand, within COO64_RS11955at 207.831 kb on - strand, within COO64_RS11955at 207.954 kb on + strandat 207.954 kb on + strandat 207.955 kb on - strandat 207.955 kb on - strandat 207.971 kb on + strandat 207.971 kb on + strandat 207.971 kb on + strandat 207.971 kb on + strandat 207.972 kb on - strandat 207.972 kb on - strandat 207.972 kb on - strandat 207.972 kb on - strandat 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.106 kb on + strand, within COO64_RS11960at 208.106 kb on + strand, within COO64_RS11960at 208.107 kb on - strand, within COO64_RS11960at 208.311 kb on + strand, within COO64_RS11960at 208.311 kb on + strand, within COO64_RS11960at 208.312 kb on - strand, within COO64_RS11960at 208.480 kb on + strand, within COO64_RS11960at 208.536 kb on + strandat 208.536 kb on + strandat 208.536 kb on + strandat 208.536 kb on + strandat 208.537 kb on - strandat 208.537 kb on - strandat 208.537 kb on - strandat 208.615 kb on - strandat 208.615 kb on - strandat 208.676 kb on + strandat 208.743 kb on + strandat 208.743 kb on + strandat 208.743 kb on + strandat 208.744 kb on - strandat 208.744 kb on - strandat 208.834 kb on - strand, within COO64_RS11965at 209.447 kb on + strand, within COO64_RS11965at 209.447 kb on + strand, within COO64_RS11965at 209.448 kb on - strand, within COO64_RS11965at 209.448 kb on - strand, within COO64_RS11965at 209.654 kb on + strand, within COO64_RS11965at 209.654 kb on + strand, within COO64_RS11965at 209.654 kb on + strand, within COO64_RS11965at 209.655 kb on - strand, within COO64_RS11965at 209.655 kb on - strand, within COO64_RS11965at 209.655 kb on - strand, within COO64_RS11965at 209.655 kb on - strand, within COO64_RS11965at 209.655 kb on - strand, within COO64_RS11965at 209.715 kb on - strand, within COO64_RS11965at 209.715 kb on - strand, within COO64_RS11965at 209.715 kb on - strand, within COO64_RS11965at 209.755 kb on + strand, within COO64_RS11965at 209.756 kb on - strand, within COO64_RS11965at 209.825 kb on + strand, within COO64_RS11965at 209.826 kb on - strand, within COO64_RS11965at 209.826 kb on - strand, within COO64_RS11965at 209.880 kb on + strand, within COO64_RS11965at 209.957 kb on + strand, within COO64_RS11965at 209.957 kb on + strand, within COO64_RS11965at 209.958 kb on - strand, within COO64_RS11965at 210.002 kb on + strand, within COO64_RS11965at 210.002 kb on + strand, within COO64_RS11965at 210.003 kb on - strand, within COO64_RS11965at 210.060 kb on + strand, within COO64_RS11965at 210.104 kb on + strand, within COO64_RS11965at 210.104 kb on + strand, within COO64_RS11965at 210.104 kb on + strand, within COO64_RS11965at 210.105 kb on - strand, within COO64_RS11965at 210.105 kb on - strand, within COO64_RS11965at 210.296 kb on + strand, within COO64_RS11965at 210.323 kb on + strand, within COO64_RS11965at 210.323 kb on + strand, within COO64_RS11965at 210.323 kb on + strand, within COO64_RS11965at 210.323 kb on + strand, within COO64_RS11965at 210.323 kb on + strand, within COO64_RS11965at 210.324 kb on - strand, within COO64_RS11965at 210.324 kb on - strand, within COO64_RS11965at 210.324 kb on - strand, within COO64_RS11965at 210.324 kb on - strand, within COO64_RS11965at 210.324 kb on - strand, within COO64_RS11965at 210.472 kb on - strandat 210.472 kb on - strandat 210.588 kb on - strandat 210.600 kb on + strandat 210.600 kb on + strandat 210.601 kb on - strandat 210.601 kb on - strandat 210.601 kb on - strandat 210.601 kb on - strandat 210.746 kb on + strand, within COO64_RS11970at 210.747 kb on - strand, within COO64_RS11970at 210.747 kb on - strand, within COO64_RS11970at 210.785 kb on + strand, within COO64_RS11970at 210.785 kb on + strand, within COO64_RS11970at 210.785 kb on + strand, within COO64_RS11970at 210.785 kb on + strand, within COO64_RS11970at 210.785 kb on + strand, within COO64_RS11970at 210.785 kb on + strand, within COO64_RS11970at 210.786 kb on - strand, within COO64_RS11970at 210.786 kb on - strand, within COO64_RS11970at 210.786 kb on - strand, within COO64_RS11970at 210.786 kb on - strand, within COO64_RS11970at 210.786 kb on - strand, within COO64_RS11970at 210.786 kb on - strand, within COO64_RS11970at 210.797 kb on + strand, within COO64_RS11970at 210.797 kb on + strand, within COO64_RS11970at 210.797 kb on + strand, within COO64_RS11970at 210.797 kb on + strand, within COO64_RS11970at 210.798 kb on - strand, within COO64_RS11970at 210.798 kb on - strand, within COO64_RS11970at 210.798 kb on - strand, within COO64_RS11970at 210.798 kb on - strand, within COO64_RS11970at 210.798 kb on - strand, within COO64_RS11970at 210.798 kb on - strand, within COO64_RS11970at 210.873 kb on - strand, within COO64_RS11970at 210.958 kb on + strand, within COO64_RS11970at 210.958 kb on + strand, within COO64_RS11970at 211.177 kb on + strand, within COO64_RS11970at 211.178 kb on - strand, within COO64_RS11970at 211.178 kb on - strand, within COO64_RS11970at 211.304 kb on + strand, within COO64_RS11970at 211.305 kb on - strand, within COO64_RS11970at 211.424 kb on + strand, within COO64_RS11970at 211.424 kb on + strand, within COO64_RS11970at 211.424 kb on + strand, within COO64_RS11970at 211.424 kb on + strand, within COO64_RS11970at 211.425 kb on - strand, within COO64_RS11970at 211.563 kb on + strandat 211.563 kb on + strandat 211.564 kb on - strandat 211.564 kb on - strandat 211.564 kb on - strandat 211.564 kb on - strandat 211.564 kb on - strandat 211.564 kb on - strandat 211.565 kb on + strandat 211.565 kb on + strandat 211.565 kb on + strandat 211.565 kb on + strandat 211.566 kb on - strandat 211.566 kb on - strandat 211.566 kb on - strandat 211.566 kb on - strandat 211.566 kb on - strandat 211.566 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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207,626 + COO64_RS11955 0.68 -0.1
207,682 + COO64_RS11955 0.74 -0.3
207,682 + COO64_RS11955 0.74 +0.0
207,830 + COO64_RS11955 0.90 -1.2
207,830 + COO64_RS11955 0.90 -0.1
207,830 + COO64_RS11955 0.90 +0.3
207,831 - COO64_RS11955 0.90 -1.0
207,954 + +0.0
207,954 + -0.0
207,955 - -0.9
207,955 - -0.2
207,971 + -0.0
207,971 + +0.5
207,971 + +0.0
207,971 + +0.2
207,972 - -0.7
207,972 - -0.0
207,972 - +0.2
207,972 - +0.3
208,101 + COO64_RS11960 0.18 +0.6
208,101 + COO64_RS11960 0.18 +0.1
208,101 + COO64_RS11960 0.18 +0.5
208,101 + COO64_RS11960 0.18 -0.0
208,101 + COO64_RS11960 0.18 -0.8
208,101 + COO64_RS11960 0.18 -1.1
208,101 + COO64_RS11960 0.18 -1.1
208,101 + COO64_RS11960 0.18 -1.6
208,101 + COO64_RS11960 0.18 +0.1
208,101 + COO64_RS11960 0.18 +0.0
208,101 + COO64_RS11960 0.18 +0.7
208,101 + COO64_RS11960 0.18 -0.3
208,101 + COO64_RS11960 0.18 +0.3
208,102 - COO64_RS11960 0.18 -0.3
208,102 - COO64_RS11960 0.18 -1.3
208,102 - COO64_RS11960 0.18 -0.3
208,102 - COO64_RS11960 0.18 -1.9
208,102 - COO64_RS11960 0.18 +0.1
208,102 - COO64_RS11960 0.18 -0.2
208,102 - COO64_RS11960 0.18 +0.0
208,102 - COO64_RS11960 0.18 -0.5
208,102 - COO64_RS11960 0.18 -1.1
208,102 - COO64_RS11960 0.18 +1.0
208,102 - COO64_RS11960 0.18 -2.1
208,102 - COO64_RS11960 0.18 -0.3
208,102 - COO64_RS11960 0.18 +0.9
208,102 - COO64_RS11960 0.18 -1.7
208,102 - COO64_RS11960 0.18 +0.5
208,106 + COO64_RS11960 0.19 -0.2
208,106 + COO64_RS11960 0.19 -0.2
208,107 - COO64_RS11960 0.19 -0.1
208,311 + COO64_RS11960 0.55 +0.5
208,311 + COO64_RS11960 0.55 -0.3
208,312 - COO64_RS11960 0.55 -0.4
208,480 + COO64_RS11960 0.85 -0.9
208,536 + -1.2
208,536 + +0.3
208,536 + -0.0
208,536 + +0.6
208,537 - +0.7
208,537 - +0.6
208,537 - +0.4
208,615 - -1.0
208,615 - -0.5
208,676 + -0.1
208,743 + -1.5
208,743 + +0.5
208,743 + +0.0
208,744 - -0.0
208,744 - +0.2
208,834 - COO64_RS11965 0.13 +0.0
209,447 + COO64_RS11965 0.44 +3.0
209,447 + COO64_RS11965 0.44 -1.3
209,448 - COO64_RS11965 0.44 +1.6
209,448 - COO64_RS11965 0.44 +1.8
209,654 + COO64_RS11965 0.54 -1.4
209,654 + COO64_RS11965 0.54 -1.0
209,654 + COO64_RS11965 0.54 -0.8
209,655 - COO64_RS11965 0.54 -0.4
209,655 - COO64_RS11965 0.54 +0.7
209,655 - COO64_RS11965 0.54 -0.1
209,655 - COO64_RS11965 0.54 -0.5
209,655 - COO64_RS11965 0.54 -1.1
209,715 - COO64_RS11965 0.57 +0.5
209,715 - COO64_RS11965 0.57 +0.2
209,715 - COO64_RS11965 0.57 +0.2
209,755 + COO64_RS11965 0.59 -1.3
209,756 - COO64_RS11965 0.59 +0.8
209,825 + COO64_RS11965 0.63 -0.8
209,826 - COO64_RS11965 0.63 -1.0
209,826 - COO64_RS11965 0.63 -0.2
209,880 + COO64_RS11965 0.65 -0.7
209,957 + COO64_RS11965 0.69 -0.1
209,957 + COO64_RS11965 0.69 +0.7
209,958 - COO64_RS11965 0.69 -2.0
210,002 + COO64_RS11965 0.71 -0.8
210,002 + COO64_RS11965 0.71 -0.3
210,003 - COO64_RS11965 0.71 -0.8
210,060 + COO64_RS11965 0.74 -0.2
210,104 + COO64_RS11965 0.77 +0.0
210,104 + COO64_RS11965 0.77 +1.0
210,104 + COO64_RS11965 0.77 +0.5
210,105 - COO64_RS11965 0.77 -0.8
210,105 - COO64_RS11965 0.77 -0.3
210,296 + COO64_RS11965 0.86 -1.5
210,323 + COO64_RS11965 0.87 +0.6
210,323 + COO64_RS11965 0.87 -0.1
210,323 + COO64_RS11965 0.87 +0.2
210,323 + COO64_RS11965 0.87 -1.1
210,323 + COO64_RS11965 0.87 -2.0
210,324 - COO64_RS11965 0.87 +0.8
210,324 - COO64_RS11965 0.87 +0.5
210,324 - COO64_RS11965 0.87 -0.4
210,324 - COO64_RS11965 0.87 -0.1
210,324 - COO64_RS11965 0.87 -0.3
210,472 - +1.5
210,472 - +0.3
210,588 - +0.2
210,600 + -0.6
210,600 + -0.1
210,601 - +0.9
210,601 - +0.7
210,601 - +0.3
210,601 - +0.7
210,746 + COO64_RS11970 0.13 -0.4
210,747 - COO64_RS11970 0.13 -0.3
210,747 - COO64_RS11970 0.13 -1.1
210,785 + COO64_RS11970 0.17 -0.5
210,785 + COO64_RS11970 0.17 -1.9
210,785 + COO64_RS11970 0.17 -1.1
210,785 + COO64_RS11970 0.17 -1.3
210,785 + COO64_RS11970 0.17 +0.3
210,785 + COO64_RS11970 0.17 +1.2
210,786 - COO64_RS11970 0.17 -0.7
210,786 - COO64_RS11970 0.17 -1.1
210,786 - COO64_RS11970 0.17 -0.2
210,786 - COO64_RS11970 0.17 -0.1
210,786 - COO64_RS11970 0.17 +0.2
210,786 - COO64_RS11970 0.17 -0.2
210,797 + COO64_RS11970 0.18 -1.0
210,797 + COO64_RS11970 0.18 -1.0
210,797 + COO64_RS11970 0.18 -1.0
210,797 + COO64_RS11970 0.18 -0.8
210,798 - COO64_RS11970 0.19 -0.4
210,798 - COO64_RS11970 0.19 -0.1
210,798 - COO64_RS11970 0.19 -1.1
210,798 - COO64_RS11970 0.19 -2.5
210,798 - COO64_RS11970 0.19 -1.3
210,798 - COO64_RS11970 0.19 -0.6
210,873 - COO64_RS11970 0.27 +0.0
210,958 + COO64_RS11970 0.36 +1.5
210,958 + COO64_RS11970 0.36 -2.0
211,177 + COO64_RS11970 0.60 +0.0
211,178 - COO64_RS11970 0.60 -0.2
211,178 - COO64_RS11970 0.60 -0.5
211,304 + COO64_RS11970 0.74 -1.3
211,305 - COO64_RS11970 0.74 +0.5
211,424 + COO64_RS11970 0.87 -0.8
211,424 + COO64_RS11970 0.87 -1.3
211,424 + COO64_RS11970 0.87 +0.0
211,424 + COO64_RS11970 0.87 -0.3
211,425 - COO64_RS11970 0.87 -1.0
211,563 + -0.7
211,563 + -1.2
211,564 - +0.8
211,564 - +0.4
211,564 - +0.3
211,564 - -0.6
211,564 - +0.1
211,564 - -1.3
211,565 + -1.4
211,565 + -1.5
211,565 + -2.2
211,565 + +0.2
211,566 - +0.6
211,566 - +0.0
211,566 - -0.4
211,566 - -0.2
211,566 - -0.5
211,566 - +0.2

Or see this region's nucleotide sequence