Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS11480

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS11475 and COO64_RS11480 are separated by 26 nucleotidesCOO64_RS11480 and COO64_RS11485 overlap by 4 nucleotides COO64_RS11475: COO64_RS11475 - MFS transporter, at 102,020 to 103,579 _RS11475 COO64_RS11480: COO64_RS11480 - HlyD family secretion protein, at 103,606 to 104,682 _RS11480 COO64_RS11485: COO64_RS11485 - efflux transporter outer membrane subunit, at 104,679 to 106,145 _RS11485 Position (kb) 103 104 105Strain fitness (log2 ratio) -1 0 1at 102.901 kb on + strand, within COO64_RS11475at 102.901 kb on + strand, within COO64_RS11475at 102.901 kb on + strand, within COO64_RS11475at 102.901 kb on + strand, within COO64_RS11475at 102.901 kb on + strand, within COO64_RS11475at 102.937 kb on - strand, within COO64_RS11475at 103.159 kb on + strand, within COO64_RS11475at 103.159 kb on + strand, within COO64_RS11475at 103.159 kb on + strand, within COO64_RS11475at 103.159 kb on + strand, within COO64_RS11475at 103.187 kb on + strand, within COO64_RS11475at 103.187 kb on + strand, within COO64_RS11475at 103.187 kb on + strand, within COO64_RS11475at 103.450 kb on + strandat 103.450 kb on + strandat 103.450 kb on + strandat 103.490 kb on + strandat 103.490 kb on + strandat 103.556 kb on + strandat 103.556 kb on + strandat 103.556 kb on + strandat 103.556 kb on + strandat 103.557 kb on - strandat 103.577 kb on + strandat 103.604 kb on + strandat 103.604 kb on + strandat 103.604 kb on + strandat 103.732 kb on + strand, within COO64_RS11480at 104.302 kb on + strand, within COO64_RS11480at 104.302 kb on + strand, within COO64_RS11480at 104.302 kb on + strand, within COO64_RS11480at 104.302 kb on + strand, within COO64_RS11480at 104.353 kb on + strand, within COO64_RS11480at 104.353 kb on + strand, within COO64_RS11480at 104.353 kb on + strand, within COO64_RS11480at 104.547 kb on + strand, within COO64_RS11480at 104.547 kb on + strand, within COO64_RS11480at 104.691 kb on + strandat 104.691 kb on + strandat 104.691 kb on + strandat 104.691 kb on + strandat 104.691 kb on + strandat 104.691 kb on + strandat 104.691 kb on + strandat 104.692 kb on - strandat 104.720 kb on + strandat 104.988 kb on + strand, within COO64_RS11485at 104.988 kb on + strand, within COO64_RS11485at 104.989 kb on - strand, within COO64_RS11485at 105.016 kb on - strand, within COO64_RS11485at 105.237 kb on + strand, within COO64_RS11485at 105.237 kb on + strand, within COO64_RS11485at 105.237 kb on + strand, within COO64_RS11485at 105.238 kb on - strand, within COO64_RS11485at 105.238 kb on - strand, within COO64_RS11485at 105.238 kb on - strand, within COO64_RS11485at 105.238 kb on - strand, within COO64_RS11485at 105.238 kb on - strand, within COO64_RS11485at 105.305 kb on + strand, within COO64_RS11485at 105.305 kb on + strand, within COO64_RS11485at 105.306 kb on - strand, within COO64_RS11485at 105.508 kb on + strand, within COO64_RS11485at 105.520 kb on + strand, within COO64_RS11485at 105.521 kb on - strand, within COO64_RS11485at 105.640 kb on - strand, within COO64_RS11485

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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102,901 + COO64_RS11475 0.56 +0.5
102,901 + COO64_RS11475 0.56 +1.5
102,901 + COO64_RS11475 0.56 +0.0
102,901 + COO64_RS11475 0.56 -0.7
102,901 + COO64_RS11475 0.56 +0.2
102,937 - COO64_RS11475 0.59 -1.0
103,159 + COO64_RS11475 0.73 +0.5
103,159 + COO64_RS11475 0.73 -0.5
103,159 + COO64_RS11475 0.73 +0.1
103,159 + COO64_RS11475 0.73 -0.3
103,187 + COO64_RS11475 0.75 -0.8
103,187 + COO64_RS11475 0.75 -1.3
103,187 + COO64_RS11475 0.75 +0.7
103,450 + -1.1
103,450 + -1.1
103,450 + +0.0
103,490 + -0.8
103,490 + -0.1
103,556 + -0.4
103,556 + +1.0
103,556 + +0.1
103,556 + -0.1
103,557 - -0.5
103,577 + -1.6
103,604 + +0.0
103,604 + +0.1
103,604 + -1.5
103,732 + COO64_RS11480 0.12 -0.3
104,302 + COO64_RS11480 0.65 +0.2
104,302 + COO64_RS11480 0.65 -0.8
104,302 + COO64_RS11480 0.65 -1.0
104,302 + COO64_RS11480 0.65 -0.3
104,353 + COO64_RS11480 0.69 +0.0
104,353 + COO64_RS11480 0.69 +0.0
104,353 + COO64_RS11480 0.69 -0.1
104,547 + COO64_RS11480 0.87 -0.8
104,547 + COO64_RS11480 0.87 -0.8
104,691 + -0.0
104,691 + +0.1
104,691 + -0.3
104,691 + -0.8
104,691 + +0.7
104,691 + +0.2
104,691 + -0.8
104,692 - -1.1
104,720 + -0.8
104,988 + COO64_RS11485 0.21 -0.8
104,988 + COO64_RS11485 0.21 -1.4
104,989 - COO64_RS11485 0.21 -0.4
105,016 - COO64_RS11485 0.23 +0.0
105,237 + COO64_RS11485 0.38 -0.3
105,237 + COO64_RS11485 0.38 +0.1
105,237 + COO64_RS11485 0.38 -1.1
105,238 - COO64_RS11485 0.38 +1.5
105,238 - COO64_RS11485 0.38 +0.6
105,238 - COO64_RS11485 0.38 +0.2
105,238 - COO64_RS11485 0.38 -1.5
105,238 - COO64_RS11485 0.38 +0.7
105,305 + COO64_RS11485 0.43 -0.1
105,305 + COO64_RS11485 0.43 +0.6
105,306 - COO64_RS11485 0.43 -1.0
105,508 + COO64_RS11485 0.57 +0.8
105,520 + COO64_RS11485 0.57 -0.8
105,521 - COO64_RS11485 0.57 -0.2
105,640 - COO64_RS11485 0.66 -0.3

Or see this region's nucleotide sequence