Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS11150

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS11140 and COO64_RS11145 are separated by 218 nucleotidesCOO64_RS11145 and COO64_RS11150 are separated by 70 nucleotidesCOO64_RS11150 and COO64_RS11155 are separated by 161 nucleotides COO64_RS11140: COO64_RS11140 - type II secretion system F family protein, at 29,556 to 30,764 _RS11140 COO64_RS11145: COO64_RS11145 - pilin, at 30,983 to 31,393 _RS11145 COO64_RS11150: COO64_RS11150 - tRNA-Thr, at 31,464 to 31,539 _RS11150 COO64_RS11155: COO64_RS11155 - phage integrase central domain-containing protein, at 31,701 to 33,017 _RS11155 Position (kb) 31 32Strain fitness (log2 ratio) -2 -1 0 1at 30.630 kb on - strand, within COO64_RS11140at 30.742 kb on + strandat 30.742 kb on + strandat 30.742 kb on + strandat 30.742 kb on + strandat 30.742 kb on + strandat 30.742 kb on + strandat 30.742 kb on + strandat 30.742 kb on + strandat 30.742 kb on + strandat 30.742 kb on + strandat 30.743 kb on - strandat 30.743 kb on - strandat 30.743 kb on - strandat 30.743 kb on - strandat 30.743 kb on - strandat 30.743 kb on - strandat 30.743 kb on - strandat 30.743 kb on - strandat 30.849 kb on + strandat 30.849 kb on + strandat 30.850 kb on - strandat 30.854 kb on + strandat 30.854 kb on + strandat 30.854 kb on + strandat 30.854 kb on + strandat 30.854 kb on + strandat 30.854 kb on + strandat 30.855 kb on - strandat 30.855 kb on - strandat 30.914 kb on + strandat 30.914 kb on + strandat 31.001 kb on - strandat 31.003 kb on + strandat 31.003 kb on + strandat 31.003 kb on + strandat 31.003 kb on + strandat 31.003 kb on + strandat 31.003 kb on + strandat 31.003 kb on + strandat 31.003 kb on + strandat 31.003 kb on + strandat 31.003 kb on + strandat 31.003 kb on + strandat 31.004 kb on - strandat 31.004 kb on - strandat 31.070 kb on + strand, within COO64_RS11145at 31.086 kb on + strand, within COO64_RS11145at 31.086 kb on + strand, within COO64_RS11145at 31.087 kb on - strand, within COO64_RS11145at 31.415 kb on + strandat 31.415 kb on + strandat 31.416 kb on - strandat 31.416 kb on - strandat 31.416 kb on - strandat 31.416 kb on - strandat 31.471 kb on + strandat 31.472 kb on - strand, within COO64_RS11150at 31.472 kb on - strand, within COO64_RS11150at 31.550 kb on + strandat 31.596 kb on - strandat 31.672 kb on - strandat 31.767 kb on + strandat 31.767 kb on + strandat 31.767 kb on + strandat 31.767 kb on + strandat 31.767 kb on + strandat 31.767 kb on + strandat 31.767 kb on + strandat 31.768 kb on - strandat 31.768 kb on - strandat 31.768 kb on - strandat 31.768 kb on - strandat 31.768 kb on - strandat 31.794 kb on + strandat 31.794 kb on + strandat 31.794 kb on + strandat 31.794 kb on + strandat 31.795 kb on - strandat 31.839 kb on + strand, within COO64_RS11155at 31.839 kb on + strand, within COO64_RS11155at 31.839 kb on + strand, within COO64_RS11155at 31.839 kb on + strand, within COO64_RS11155at 31.840 kb on - strand, within COO64_RS11155at 31.840 kb on - strand, within COO64_RS11155at 31.840 kb on - strand, within COO64_RS11155at 31.840 kb on - strand, within COO64_RS11155at 31.961 kb on + strand, within COO64_RS11155at 31.962 kb on - strand, within COO64_RS11155at 31.962 kb on - strand, within COO64_RS11155at 32.012 kb on + strand, within COO64_RS11155at 32.012 kb on + strand, within COO64_RS11155at 32.013 kb on - strand, within COO64_RS11155at 32.057 kb on + strand, within COO64_RS11155at 32.057 kb on + strand, within COO64_RS11155at 32.058 kb on - strand, within COO64_RS11155at 32.058 kb on - strand, within COO64_RS11155at 32.113 kb on + strand, within COO64_RS11155at 32.114 kb on - strand, within COO64_RS11155at 32.114 kb on - strand, within COO64_RS11155at 32.146 kb on + strand, within COO64_RS11155at 32.146 kb on + strand, within COO64_RS11155at 32.147 kb on - strand, within COO64_RS11155at 32.147 kb on - strand, within COO64_RS11155at 32.147 kb on - strand, within COO64_RS11155at 32.147 kb on - strand, within COO64_RS11155at 32.147 kb on - strand, within COO64_RS11155at 32.147 kb on - strand, within COO64_RS11155at 32.147 kb on - strand, within COO64_RS11155at 32.147 kb on - strand, within COO64_RS11155at 32.167 kb on + strand, within COO64_RS11155at 32.167 kb on + strand, within COO64_RS11155at 32.167 kb on + strand, within COO64_RS11155at 32.168 kb on - strand, within COO64_RS11155at 32.168 kb on - strand, within COO64_RS11155at 32.168 kb on - strand, within COO64_RS11155at 32.226 kb on + strand, within COO64_RS11155at 32.226 kb on + strand, within COO64_RS11155at 32.226 kb on + strand, within COO64_RS11155at 32.226 kb on + strand, within COO64_RS11155at 32.226 kb on + strand, within COO64_RS11155at 32.227 kb on - strand, within COO64_RS11155at 32.227 kb on - strand, within COO64_RS11155at 32.227 kb on - strand, within COO64_RS11155at 32.227 kb on - strand, within COO64_RS11155at 32.269 kb on + strand, within COO64_RS11155at 32.269 kb on + strand, within COO64_RS11155at 32.269 kb on + strand, within COO64_RS11155at 32.269 kb on + strand, within COO64_RS11155at 32.269 kb on + strand, within COO64_RS11155at 32.270 kb on - strand, within COO64_RS11155at 32.270 kb on - strand, within COO64_RS11155at 32.402 kb on + strand, within COO64_RS11155at 32.402 kb on + strand, within COO64_RS11155at 32.402 kb on + strand, within COO64_RS11155at 32.403 kb on - strand, within COO64_RS11155at 32.403 kb on - strand, within COO64_RS11155at 32.403 kb on - strand, within COO64_RS11155at 32.403 kb on - strand, within COO64_RS11155at 32.403 kb on - strand, within COO64_RS11155at 32.491 kb on + strand, within COO64_RS11155at 32.492 kb on - strand, within COO64_RS11155at 32.533 kb on + strand, within COO64_RS11155at 32.534 kb on - strand, within COO64_RS11155

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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30,630 - COO64_RS11140 0.89 +0.7
30,742 + -0.6
30,742 + -1.4
30,742 + -1.7
30,742 + +0.3
30,742 + +0.3
30,742 + -1.1
30,742 + +0.0
30,742 + +0.6
30,742 + +0.5
30,742 + +0.4
30,743 - -0.2
30,743 - -0.3
30,743 - +0.1
30,743 - +1.2
30,743 - -0.2
30,743 - -0.5
30,743 - +0.3
30,743 - +0.3
30,849 + -0.5
30,849 + -0.1
30,850 - -0.3
30,854 + +0.1
30,854 + -0.8
30,854 + -0.8
30,854 + +0.6
30,854 + +0.9
30,854 + +0.4
30,855 - +0.7
30,855 - -0.5
30,914 + -0.9
30,914 + -0.6
31,001 - +0.3
31,003 + +0.7
31,003 + +0.6
31,003 + +0.6
31,003 + +0.3
31,003 + +0.5
31,003 + -0.7
31,003 + -0.3
31,003 + +0.9
31,003 + +0.0
31,003 + -0.4
31,003 + -1.0
31,004 - +0.6
31,004 - +0.8
31,070 + COO64_RS11145 0.21 -0.2
31,086 + COO64_RS11145 0.25 +0.7
31,086 + COO64_RS11145 0.25 +0.0
31,087 - COO64_RS11145 0.25 -1.6
31,415 + +0.2
31,415 + +0.4
31,416 - +0.4
31,416 - -0.3
31,416 - +0.6
31,416 - -0.1
31,471 + -0.8
31,472 - COO64_RS11150 0.11 -0.8
31,472 - COO64_RS11150 0.11 -1.5
31,550 + -0.8
31,596 - -0.2
31,672 - +0.1
31,767 + -1.9
31,767 + -1.3
31,767 + +0.1
31,767 + -0.6
31,767 + -0.1
31,767 + +0.7
31,767 + +0.6
31,768 - -0.5
31,768 - -1.0
31,768 - -0.2
31,768 - -0.4
31,768 - +0.4
31,794 + -0.6
31,794 + -0.9
31,794 + -0.7
31,794 + +0.1
31,795 - -0.7
31,839 + COO64_RS11155 0.10 -1.3
31,839 + COO64_RS11155 0.10 -1.3
31,839 + COO64_RS11155 0.10 -0.2
31,839 + COO64_RS11155 0.10 -0.3
31,840 - COO64_RS11155 0.11 +0.5
31,840 - COO64_RS11155 0.11 +0.8
31,840 - COO64_RS11155 0.11 -0.3
31,840 - COO64_RS11155 0.11 -0.2
31,961 + COO64_RS11155 0.20 +0.2
31,962 - COO64_RS11155 0.20 -0.2
31,962 - COO64_RS11155 0.20 +0.3
32,012 + COO64_RS11155 0.24 -0.1
32,012 + COO64_RS11155 0.24 +0.0
32,013 - COO64_RS11155 0.24 -0.4
32,057 + COO64_RS11155 0.27 -0.2
32,057 + COO64_RS11155 0.27 -0.1
32,058 - COO64_RS11155 0.27 -2.3
32,058 - COO64_RS11155 0.27 -0.4
32,113 + COO64_RS11155 0.31 +0.3
32,114 - COO64_RS11155 0.31 -0.3
32,114 - COO64_RS11155 0.31 -0.5
32,146 + COO64_RS11155 0.34 -0.2
32,146 + COO64_RS11155 0.34 -0.2
32,147 - COO64_RS11155 0.34 +0.3
32,147 - COO64_RS11155 0.34 -0.5
32,147 - COO64_RS11155 0.34 +0.4
32,147 - COO64_RS11155 0.34 -0.1
32,147 - COO64_RS11155 0.34 -0.8
32,147 - COO64_RS11155 0.34 -0.3
32,147 - COO64_RS11155 0.34 -1.3
32,147 - COO64_RS11155 0.34 +0.1
32,167 + COO64_RS11155 0.35 +1.5
32,167 + COO64_RS11155 0.35 +1.6
32,167 + COO64_RS11155 0.35 -0.3
32,168 - COO64_RS11155 0.35 -0.5
32,168 - COO64_RS11155 0.35 -0.8
32,168 - COO64_RS11155 0.35 +0.6
32,226 + COO64_RS11155 0.40 -0.4
32,226 + COO64_RS11155 0.40 -0.1
32,226 + COO64_RS11155 0.40 -1.0
32,226 + COO64_RS11155 0.40 -0.2
32,226 + COO64_RS11155 0.40 +0.1
32,227 - COO64_RS11155 0.40 -0.4
32,227 - COO64_RS11155 0.40 -0.7
32,227 - COO64_RS11155 0.40 +0.2
32,227 - COO64_RS11155 0.40 -1.8
32,269 + COO64_RS11155 0.43 -0.6
32,269 + COO64_RS11155 0.43 -0.9
32,269 + COO64_RS11155 0.43 +0.0
32,269 + COO64_RS11155 0.43 -0.7
32,269 + COO64_RS11155 0.43 +0.6
32,270 - COO64_RS11155 0.43 +0.7
32,270 - COO64_RS11155 0.43 +0.2
32,402 + COO64_RS11155 0.53 +0.9
32,402 + COO64_RS11155 0.53 -0.1
32,402 + COO64_RS11155 0.53 -0.6
32,403 - COO64_RS11155 0.53 +0.2
32,403 - COO64_RS11155 0.53 +0.5
32,403 - COO64_RS11155 0.53 -0.6
32,403 - COO64_RS11155 0.53 +0.2
32,403 - COO64_RS11155 0.53 +0.0
32,491 + COO64_RS11155 0.60 +0.2
32,492 - COO64_RS11155 0.60 -0.5
32,533 + COO64_RS11155 0.63 -0.7
32,534 - COO64_RS11155 0.63 +0.5

Or see this region's nucleotide sequence