Experiment: supernatant control, M9 with 0.25X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS11050 and rluD are separated by 150 nucleotides rluD and pgeF overlap by 4 nucleotides pgeF and clpB are separated by 124 nucleotides
COO64_RS11050: COO64_RS11050 - outer membrane protein assembly factor BamD, at 15,865 to 16,887
_RS11050
COO64_RS11055: rluD - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 17,038 to 18,000
rluD
COO64_RS11060: pgeF - peptidoglycan editing factor PgeF, at 17,997 to 18,737
pgeF
COO64_RS11065: clpB - ATP-dependent chaperone ClpB, at 18,862 to 21,426
clpB
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.939 kb on - strand at 16.939 kb on - strand at 16.982 kb on - strand at 16.986 kb on - strand at 16.986 kb on - strand at 16.986 kb on - strand at 17.545 kb on + strand, within rluD at 17.545 kb on + strand, within rluD at 17.545 kb on + strand, within rluD at 17.545 kb on + strand, within rluD at 17.545 kb on + strand, within rluD at 17.545 kb on + strand, within rluD at 17.545 kb on + strand, within rluD at 17.545 kb on + strand, within rluD at 17.545 kb on + strand, within rluD at 17.546 kb on - strand, within rluD at 17.546 kb on - strand, within rluD at 17.546 kb on - strand, within rluD at 17.546 kb on - strand, within rluD at 17.546 kb on - strand, within rluD at 17.546 kb on - strand, within rluD at 17.546 kb on - strand, within rluD at 17.546 kb on - strand, within rluD at 17.546 kb on - strand, within rluD at 17.675 kb on + strand, within rluD at 17.675 kb on + strand, within rluD at 17.676 kb on - strand, within rluD at 17.731 kb on - strand, within rluD at 17.791 kb on + strand, within rluD at 17.791 kb on + strand, within rluD at 17.792 kb on - strand, within rluD at 17.809 kb on - strand, within rluD at 18.099 kb on + strand, within pgeF at 18.100 kb on - strand, within pgeF at 18.270 kb on + strand, within pgeF at 18.270 kb on + strand, within pgeF at 18.271 kb on - strand, within pgeF at 18.271 kb on - strand, within pgeF at 18.355 kb on + strand, within pgeF at 18.499 kb on + strand, within pgeF at 18.499 kb on + strand, within pgeF at 18.499 kb on + strand, within pgeF at 18.500 kb on - strand, within pgeF at 18.500 kb on - strand, within pgeF at 18.500 kb on - strand, within pgeF at 18.582 kb on - strand, within pgeF at 18.585 kb on + strand, within pgeF at 18.586 kb on - strand, within pgeF at 18.586 kb on - strand, within pgeF at 18.586 kb on - strand, within pgeF at 18.586 kb on - strand, within pgeF at 18.633 kb on + strand, within pgeF at 18.633 kb on + strand, within pgeF at 18.633 kb on + strand, within pgeF at 18.633 kb on + strand, within pgeF at 18.634 kb on - strand, within pgeF at 18.634 kb on - strand, within pgeF at 18.634 kb on - strand, within pgeF at 18.672 kb on + strand at 18.672 kb on + strand at 18.672 kb on + strand at 18.672 kb on + strand at 18.672 kb on + strand at 18.672 kb on + strand at 18.673 kb on - strand at 18.673 kb on - strand at 18.673 kb on - strand at 18.673 kb on - strand at 18.673 kb on - strand at 18.673 kb on - strand at 18.673 kb on - strand at 18.782 kb on - strand at 18.782 kb on - strand at 18.782 kb on - strand at 18.782 kb on - strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.786 kb on - strand at 18.786 kb on - strand at 18.786 kb on - strand at 18.786 kb on - strand at 18.786 kb on - strand at 18.786 kb on - strand at 18.786 kb on - strand at 18.786 kb on - strand at 18.786 kb on - strand at 18.786 kb on - strand at 18.786 kb on - strand at 18.786 kb on - strand at 18.793 kb on + strand at 18.793 kb on + strand at 18.793 kb on + strand at 18.793 kb on + strand at 18.793 kb on + strand at 18.794 kb on - strand at 18.794 kb on - strand at 18.794 kb on - strand at 18.794 kb on - strand at 18.794 kb on - strand at 18.794 kb on - strand at 18.856 kb on + strand at 18.857 kb on - strand at 18.869 kb on + strand at 18.869 kb on + strand at 18.870 kb on - strand at 18.870 kb on - strand at 18.896 kb on + strand at 18.896 kb on + strand at 18.896 kb on + strand at 18.896 kb on + strand at 18.896 kb on + strand at 18.896 kb on + strand at 18.896 kb on + strand at 18.896 kb on + strand at 18.896 kb on + strand at 18.896 kb on + strand at 18.896 kb on + strand at 18.897 kb on - strand at 18.897 kb on - strand at 18.897 kb on - strand at 18.897 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB remove 16,939 - -1.5 16,939 - -0.8 16,982 - -0.5 16,986 - -1.5 16,986 - -1.0 16,986 - -1.0 17,545 + rluD COO64_RS11055 0.53 -1.7 17,545 + rluD COO64_RS11055 0.53 +0.4 17,545 + rluD COO64_RS11055 0.53 +1.0 17,545 + rluD COO64_RS11055 0.53 +1.2 17,545 + rluD COO64_RS11055 0.53 -0.8 17,545 + rluD COO64_RS11055 0.53 +0.3 17,545 + rluD COO64_RS11055 0.53 -1.0 17,545 + rluD COO64_RS11055 0.53 -1.4 17,545 + rluD COO64_RS11055 0.53 +0.5 17,546 - rluD COO64_RS11055 0.53 -0.1 17,546 - rluD COO64_RS11055 0.53 +0.1 17,546 - rluD COO64_RS11055 0.53 -0.9 17,546 - rluD COO64_RS11055 0.53 -1.4 17,546 - rluD COO64_RS11055 0.53 +0.3 17,546 - rluD COO64_RS11055 0.53 -1.5 17,546 - rluD COO64_RS11055 0.53 -1.0 17,546 - rluD COO64_RS11055 0.53 +0.2 17,546 - rluD COO64_RS11055 0.53 -1.9 17,675 + rluD COO64_RS11055 0.66 -1.0 17,675 + rluD COO64_RS11055 0.66 +0.7 17,676 - rluD COO64_RS11055 0.66 +0.7 17,731 - rluD COO64_RS11055 0.72 +0.5 17,791 + rluD COO64_RS11055 0.78 -1.1 17,791 + rluD COO64_RS11055 0.78 +0.0 17,792 - rluD COO64_RS11055 0.78 -0.5 17,809 - rluD COO64_RS11055 0.80 +1.3 18,099 + pgeF COO64_RS11060 0.14 -0.2 18,100 - pgeF COO64_RS11060 0.14 +0.6 18,270 + pgeF COO64_RS11060 0.37 +1.0 18,270 + pgeF COO64_RS11060 0.37 +0.4 18,271 - pgeF COO64_RS11060 0.37 +0.0 18,271 - pgeF COO64_RS11060 0.37 -0.4 18,355 + pgeF COO64_RS11060 0.48 -2.5 18,499 + pgeF COO64_RS11060 0.68 -1.5 18,499 + pgeF COO64_RS11060 0.68 -0.7 18,499 + pgeF COO64_RS11060 0.68 +0.2 18,500 - pgeF COO64_RS11060 0.68 +0.7 18,500 - pgeF COO64_RS11060 0.68 -0.6 18,500 - pgeF COO64_RS11060 0.68 -0.3 18,582 - pgeF COO64_RS11060 0.79 -1.7 18,585 + pgeF COO64_RS11060 0.79 +1.0 18,586 - pgeF COO64_RS11060 0.79 -1.9 18,586 - pgeF COO64_RS11060 0.79 -0.2 18,586 - pgeF COO64_RS11060 0.79 -1.8 18,586 - pgeF COO64_RS11060 0.79 +0.4 18,633 + pgeF COO64_RS11060 0.86 -0.1 18,633 + pgeF COO64_RS11060 0.86 +0.4 18,633 + pgeF COO64_RS11060 0.86 -0.8 18,633 + pgeF COO64_RS11060 0.86 -0.9 18,634 - pgeF COO64_RS11060 0.86 +0.1 18,634 - pgeF COO64_RS11060 0.86 -0.0 18,634 - pgeF COO64_RS11060 0.86 +0.2 18,672 + +0.7 18,672 + +0.2 18,672 + +1.1 18,672 + -0.5 18,672 + -0.3 18,672 + -1.1 18,673 - -0.9 18,673 - -1.3 18,673 - +2.5 18,673 - -0.0 18,673 - +0.3 18,673 - -0.4 18,673 - +0.6 18,782 - +0.9 18,782 - +0.8 18,782 - -0.0 18,782 - -0.2 18,785 + +0.0 18,785 + +1.5 18,785 + +0.5 18,785 + -0.5 18,785 + -0.9 18,785 + +0.4 18,785 + -0.2 18,785 + +0.5 18,785 + -0.5 18,785 + +0.9 18,785 + -0.5 18,785 + -0.3 18,785 + -1.0 18,786 - +0.2 18,786 - -0.4 18,786 - +0.5 18,786 - +0.4 18,786 - -0.9 18,786 - +0.2 18,786 - +0.1 18,786 - -0.0 18,786 - -0.8 18,786 - -1.0 18,786 - -0.2 18,786 - -0.3 18,793 + -0.5 18,793 + +0.9 18,793 + +0.3 18,793 + +0.8 18,793 + -0.3 18,794 - +0.5 18,794 - -0.4 18,794 - -0.9 18,794 - -0.2 18,794 - -0.1 18,794 - -0.2 18,856 + -0.1 18,857 - +0.3 18,869 + -0.1 18,869 + -0.7 18,870 - -0.5 18,870 - -0.5 18,896 + -0.7 18,896 + -1.2 18,896 + +0.0 18,896 + +0.3 18,896 + -0.2 18,896 + +0.5 18,896 + +0.3 18,896 + -0.5 18,896 + -0.1 18,896 + +0.9 18,896 + -0.7 18,897 - -1.1 18,897 - +0.5 18,897 - -0.8 18,897 - +0.9
Or see this region's nucleotide sequence