Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS10315

Experiment: supernatant control, M9 with 0.25X LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCOO64_RS10305 and COO64_RS10310 are separated by 3 nucleotidesCOO64_RS10310 and COO64_RS10315 are separated by 6 nucleotidesCOO64_RS10315 and COO64_RS10320 are separated by 164 nucleotides COO64_RS10305: COO64_RS10305 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 213,693 to 214,118 _RS10305 COO64_RS10310: COO64_RS10310 - endonuclease, at 214,122 to 214,814 _RS10310 COO64_RS10315: COO64_RS10315 - DUF1654 domain-containing protein, at 214,821 to 215,090 _RS10315 COO64_RS10320: COO64_RS10320 - asparaginase, at 215,255 to 216,343 _RS10320 Position (kb) 214 215 216Strain fitness (log2 ratio) -3 -2 -1 0 1at 213.949 kb on - strand, within COO64_RS10305at 214.080 kb on + strandat 214.098 kb on + strandat 214.098 kb on + strandat 214.099 kb on - strandat 214.246 kb on + strand, within COO64_RS10310at 214.246 kb on + strand, within COO64_RS10310at 214.247 kb on - strand, within COO64_RS10310at 214.282 kb on + strand, within COO64_RS10310at 214.283 kb on - strand, within COO64_RS10310at 214.283 kb on - strand, within COO64_RS10310at 214.295 kb on + strand, within COO64_RS10310at 214.295 kb on + strand, within COO64_RS10310at 214.296 kb on - strand, within COO64_RS10310at 214.296 kb on - strand, within COO64_RS10310at 214.296 kb on - strand, within COO64_RS10310at 214.296 kb on - strand, within COO64_RS10310at 214.296 kb on - strand, within COO64_RS10310at 214.296 kb on - strand, within COO64_RS10310at 214.296 kb on - strand, within COO64_RS10310at 214.297 kb on + strand, within COO64_RS10310at 214.297 kb on + strand, within COO64_RS10310at 214.297 kb on + strand, within COO64_RS10310at 214.297 kb on + strand, within COO64_RS10310at 214.297 kb on + strand, within COO64_RS10310at 214.297 kb on + strand, within COO64_RS10310at 214.297 kb on + strand, within COO64_RS10310at 214.297 kb on + strand, within COO64_RS10310at 214.297 kb on + strand, within COO64_RS10310at 214.297 kb on + strand, within COO64_RS10310at 214.297 kb on + strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.298 kb on - strand, within COO64_RS10310at 214.303 kb on + strand, within COO64_RS10310at 214.303 kb on + strand, within COO64_RS10310at 214.303 kb on + strand, within COO64_RS10310at 214.303 kb on + strand, within COO64_RS10310at 214.303 kb on + strand, within COO64_RS10310at 214.304 kb on - strand, within COO64_RS10310at 214.304 kb on - strand, within COO64_RS10310at 214.304 kb on - strand, within COO64_RS10310at 214.304 kb on - strand, within COO64_RS10310at 214.304 kb on - strand, within COO64_RS10310at 214.304 kb on - strand, within COO64_RS10310at 214.387 kb on + strand, within COO64_RS10310at 214.388 kb on - strand, within COO64_RS10310at 214.496 kb on - strand, within COO64_RS10310at 214.580 kb on + strand, within COO64_RS10310at 214.581 kb on - strand, within COO64_RS10310at 214.630 kb on + strand, within COO64_RS10310at 214.666 kb on + strand, within COO64_RS10310at 214.666 kb on + strand, within COO64_RS10310at 214.667 kb on - strand, within COO64_RS10310at 214.681 kb on + strand, within COO64_RS10310at 214.681 kb on + strand, within COO64_RS10310at 214.681 kb on + strand, within COO64_RS10310at 214.682 kb on - strand, within COO64_RS10310at 214.682 kb on - strand, within COO64_RS10310at 214.705 kb on + strand, within COO64_RS10310at 214.705 kb on + strand, within COO64_RS10310at 214.705 kb on + strand, within COO64_RS10310at 214.705 kb on + strand, within COO64_RS10310at 214.705 kb on + strand, within COO64_RS10310at 214.706 kb on - strand, within COO64_RS10310at 214.706 kb on - strand, within COO64_RS10310at 214.706 kb on - strand, within COO64_RS10310at 214.706 kb on - strand, within COO64_RS10310at 214.742 kb on + strand, within COO64_RS10310at 214.743 kb on - strand, within COO64_RS10310at 214.791 kb on + strandat 214.792 kb on - strandat 215.030 kb on - strand, within COO64_RS10315at 215.030 kb on - strand, within COO64_RS10315at 215.101 kb on - strandat 215.105 kb on + strandat 215.106 kb on - strandat 215.185 kb on - strandat 215.185 kb on - strandat 215.224 kb on - strandat 215.364 kb on + strand, within COO64_RS10320at 215.364 kb on + strand, within COO64_RS10320at 215.364 kb on + strand, within COO64_RS10320at 215.364 kb on + strand, within COO64_RS10320at 215.364 kb on + strand, within COO64_RS10320at 215.365 kb on - strand, within COO64_RS10320at 215.365 kb on - strand, within COO64_RS10320at 215.480 kb on + strand, within COO64_RS10320at 215.481 kb on - strand, within COO64_RS10320at 215.556 kb on + strand, within COO64_RS10320at 215.556 kb on + strand, within COO64_RS10320at 215.556 kb on + strand, within COO64_RS10320at 215.557 kb on - strand, within COO64_RS10320at 215.581 kb on - strand, within COO64_RS10320at 215.587 kb on - strand, within COO64_RS10320at 215.683 kb on + strand, within COO64_RS10320at 215.684 kb on - strand, within COO64_RS10320at 215.684 kb on - strand, within COO64_RS10320at 215.684 kb on - strand, within COO64_RS10320at 215.684 kb on - strand, within COO64_RS10320at 215.684 kb on - strand, within COO64_RS10320at 215.684 kb on - strand, within COO64_RS10320at 215.847 kb on + strand, within COO64_RS10320at 215.848 kb on - strand, within COO64_RS10320at 215.848 kb on - strand, within COO64_RS10320at 215.848 kb on - strand, within COO64_RS10320at 215.947 kb on - strand, within COO64_RS10320at 215.972 kb on - strand, within COO64_RS10320

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
remove
213,949 - COO64_RS10305 0.60 -1.6
214,080 + -0.9
214,098 + -0.1
214,098 + +0.0
214,099 - -3.1
214,246 + COO64_RS10310 0.18 -0.7
214,246 + COO64_RS10310 0.18 +0.9
214,247 - COO64_RS10310 0.18 -0.8
214,282 + COO64_RS10310 0.23 -0.7
214,283 - COO64_RS10310 0.23 +1.4
214,283 - COO64_RS10310 0.23 -0.4
214,295 + COO64_RS10310 0.25 +0.1
214,295 + COO64_RS10310 0.25 +0.1
214,296 - COO64_RS10310 0.25 -0.5
214,296 - COO64_RS10310 0.25 +0.1
214,296 - COO64_RS10310 0.25 -0.5
214,296 - COO64_RS10310 0.25 -0.2
214,296 - COO64_RS10310 0.25 -0.4
214,296 - COO64_RS10310 0.25 -2.1
214,296 - COO64_RS10310 0.25 +0.4
214,297 + COO64_RS10310 0.25 +0.5
214,297 + COO64_RS10310 0.25 -0.1
214,297 + COO64_RS10310 0.25 -0.3
214,297 + COO64_RS10310 0.25 -1.4
214,297 + COO64_RS10310 0.25 -0.0
214,297 + COO64_RS10310 0.25 -0.3
214,297 + COO64_RS10310 0.25 +0.3
214,297 + COO64_RS10310 0.25 +0.3
214,297 + COO64_RS10310 0.25 +0.7
214,297 + COO64_RS10310 0.25 -0.7
214,297 + COO64_RS10310 0.25 -0.4
214,298 - COO64_RS10310 0.25 -0.7
214,298 - COO64_RS10310 0.25 -1.7
214,298 - COO64_RS10310 0.25 +0.4
214,298 - COO64_RS10310 0.25 -2.4
214,298 - COO64_RS10310 0.25 -0.3
214,298 - COO64_RS10310 0.25 +0.2
214,298 - COO64_RS10310 0.25 +0.7
214,298 - COO64_RS10310 0.25 +0.6
214,298 - COO64_RS10310 0.25 -0.1
214,298 - COO64_RS10310 0.25 -1.0
214,298 - COO64_RS10310 0.25 +0.7
214,298 - COO64_RS10310 0.25 +0.7
214,298 - COO64_RS10310 0.25 -1.2
214,298 - COO64_RS10310 0.25 +0.1
214,298 - COO64_RS10310 0.25 -0.3
214,298 - COO64_RS10310 0.25 +0.4
214,298 - COO64_RS10310 0.25 -0.3
214,298 - COO64_RS10310 0.25 +0.6
214,303 + COO64_RS10310 0.26 -1.4
214,303 + COO64_RS10310 0.26 +0.6
214,303 + COO64_RS10310 0.26 -0.6
214,303 + COO64_RS10310 0.26 -0.4
214,303 + COO64_RS10310 0.26 -0.8
214,304 - COO64_RS10310 0.26 -0.0
214,304 - COO64_RS10310 0.26 +0.8
214,304 - COO64_RS10310 0.26 -0.1
214,304 - COO64_RS10310 0.26 +0.1
214,304 - COO64_RS10310 0.26 +0.6
214,304 - COO64_RS10310 0.26 -0.1
214,387 + COO64_RS10310 0.38 -0.2
214,388 - COO64_RS10310 0.38 +1.3
214,496 - COO64_RS10310 0.54 -0.4
214,580 + COO64_RS10310 0.66 -0.4
214,581 - COO64_RS10310 0.66 -0.4
214,630 + COO64_RS10310 0.73 -0.9
214,666 + COO64_RS10310 0.78 -1.1
214,666 + COO64_RS10310 0.78 -2.4
214,667 - COO64_RS10310 0.79 +0.6
214,681 + COO64_RS10310 0.81 +0.4
214,681 + COO64_RS10310 0.81 +1.1
214,681 + COO64_RS10310 0.81 -0.2
214,682 - COO64_RS10310 0.81 -0.2
214,682 - COO64_RS10310 0.81 -1.8
214,705 + COO64_RS10310 0.84 -0.0
214,705 + COO64_RS10310 0.84 +0.0
214,705 + COO64_RS10310 0.84 +0.3
214,705 + COO64_RS10310 0.84 +0.1
214,705 + COO64_RS10310 0.84 +0.1
214,706 - COO64_RS10310 0.84 -0.8
214,706 - COO64_RS10310 0.84 -0.3
214,706 - COO64_RS10310 0.84 +0.1
214,706 - COO64_RS10310 0.84 +0.6
214,742 + COO64_RS10310 0.89 +1.4
214,743 - COO64_RS10310 0.90 -0.7
214,791 + +0.1
214,792 - +0.5
215,030 - COO64_RS10315 0.77 -0.6
215,030 - COO64_RS10315 0.77 -0.8
215,101 - -0.2
215,105 + +0.5
215,106 - +0.4
215,185 - -0.7
215,185 - -1.1
215,224 - +0.1
215,364 + COO64_RS10320 0.10 +0.3
215,364 + COO64_RS10320 0.10 +0.4
215,364 + COO64_RS10320 0.10 +0.0
215,364 + COO64_RS10320 0.10 +1.1
215,364 + COO64_RS10320 0.10 +0.2
215,365 - COO64_RS10320 0.10 +0.9
215,365 - COO64_RS10320 0.10 -0.2
215,480 + COO64_RS10320 0.21 -0.3
215,481 - COO64_RS10320 0.21 -0.5
215,556 + COO64_RS10320 0.28 +0.7
215,556 + COO64_RS10320 0.28 -0.7
215,556 + COO64_RS10320 0.28 -0.6
215,557 - COO64_RS10320 0.28 -0.4
215,581 - COO64_RS10320 0.30 -0.2
215,587 - COO64_RS10320 0.30 +0.8
215,683 + COO64_RS10320 0.39 -1.2
215,684 - COO64_RS10320 0.39 +1.0
215,684 - COO64_RS10320 0.39 -0.3
215,684 - COO64_RS10320 0.39 +1.5
215,684 - COO64_RS10320 0.39 -0.5
215,684 - COO64_RS10320 0.39 -0.6
215,684 - COO64_RS10320 0.39 +0.9
215,847 + COO64_RS10320 0.54 -0.3
215,848 - COO64_RS10320 0.54 +0.2
215,848 - COO64_RS10320 0.54 -0.9
215,848 - COO64_RS10320 0.54 +0.3
215,947 - COO64_RS10320 0.64 -0.8
215,972 - COO64_RS10320 0.66 -0.3

Or see this region's nucleotide sequence